BI-2841 - Retrieve Germplasm Genotype Data Through DeltaBreed Samples

[davedrp]

Description

BI-2841 - Retrieve Germplasm Genotype Data Through DeltaBreed Samples

Please include a summary of the change that was made.
Reflect the change of linking Genotypic Data to Germplasm via Genotype Samples instead of via Experiments

The main changes are in main/java/org/breedinginsight/services/geno/impl/GigwaGenotypeServiceImpl.java

• modified the retrieveGenotypeData function.
• Added the fetchGigwaSamples function.

In Support of those changes, modified BrAPISampleDAO.java

• Exchanged the method readSamplesByIds with readSamplesByGermplasmIds.

Modified GigwaGenotypeServiceImplIntegrationTest.java

• Re-enable testFetchGermplasmGenotype()

Dependencies

**bi-web:develop

Testing

1. Import germplasm: germplasm ListHaps.xls
2. Import Genotype Samples: bi_2839_sample_submission.xls
3. Import Genotypic Data: you will have to ask me for this file. It will not allow this file type to be uploaded
4. Go to a linked germpasm (such as GID=376).
5. Click the Genotype tab
   THEN
   the Genotype data should appear on the screen below the Genotype tab.

Checklist:

• I have performed a self-review of my own code
• I have tested my code and ensured it meets the acceptance criteria of the story
• I have create/modified unit and/or integration tests to cover this change or tests are not applicable
• I have commented my code, particularly in hard-to-understand areas
• I have either updated the source of truth or arranged for update with product owner if needed https://breedinginsight.atlassian.net/wiki/spaces/BI/pages/1559953409/Source+of+Truth

[jloux-brapi]

Looks like build is failing after merging code from develop branch. Seems to be a unit test failure.

[nickpalladino]

Looks like build is failing after merging code from develop branch. Seems to be a unit test failure.

Re-ran the github actions and all tests pass now, seems it was just a transient issue