Merge branch 'JuliaDiff:main' into develop

Author: AstitvaAggarwal

CITATION.cff

@@ -60,16 +60,16 @@ references:
 preferred-citation:
   type: generic
   authors:
-  - family-names: "Hill"
-    given-names: "Adrian"
-    orcid: "https://orcid.org/0009-0009-5977-301X"
   - family-names: "Dalle"
     given-names: "Guillaume"
     orcid: "https://orcid.org/0000-0003-4866-1687"
-  title: "Sparser, Better, Faster, Stronger: Efficient Automatic Differentiation for Sparse Jacobians and Hessians"
+  - family-names: "Hill"
+    given-names: "Adrian"
+    orcid: "https://orcid.org/0009-0009-5977-301X"
+  title: "A Common Interface for Automatic Differentiation"
   year: 2025
-  eprint: "2501.17737"
+  eprint: "2505.05542"
   archivePrefix: "arXiv"
-  primaryClass: "cs.LG"
-  url: "https://arxiv.org/abs/2501.17737"
-  doi: "10.48550/arXiv.2501.17737"
+  primaryClass: "cs.MS"
+  url: "https://arxiv.org/abs/2505.05542"
+  doi: "10.48550/arXiv.2505.05542"

DifferentiationInterface/CHANGELOG.md

@@ -0,0 +1,39 @@
+# Changelog
+
+All notable changes to this project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [Unreleased]
+
+## [0.7.0]
+
+### Changed
+
+- Preparation is now strict by default ([#799])
+- New Arxiv preprint for citation ([#795])
+
+## [0.6.54] - 2025-05-11
+
+### Added
+
+- Dependency compat bounds for extras ([#790])
+- Error hints for Enzyme ([#788])
+
+## [0.6.53] - 2025-05-07
+
+### Changed
+
+- Allocate Enzyme shadow memory during preparation ([#782])
+
+[unreleased]: https://github.com/JuliaDiff/DifferentiationInterface.jl/compare/DifferentiationInterface-v0.7.0...main
+[0.7.0]: https://github.com/JuliaDiff/DifferentiationInterface.jl/compare/DifferentiationInterface-v0.6.54...DifferentiationInterface-v0.7.0
+[0.6.54]: https://github.com/JuliaDiff/DifferentiationInterface.jl/compare/DifferentiationInterface-v0.6.53...DifferentiationInterface-v0.6.54
+[0.6.53]: https://github.com/JuliaDiff/DifferentiationInterface.jl/compare/DifferentiationInterface-v0.6.52...DifferentiationInterface-v0.6.53
+
+[#799]: https://github.com/JuliaDiff/DifferentiationInterface.jl/pull/799
+[#795]: https://github.com/JuliaDiff/DifferentiationInterface.jl/pull/795
+[#790]: https://github.com/JuliaDiff/DifferentiationInterface.jl/pull/790
+[#788]: https://github.com/JuliaDiff/DifferentiationInterface.jl/pull/788
+[#782]: https://github.com/JuliaDiff/DifferentiationInterface.jl/pull/782

DifferentiationInterface/Project.toml

@@ -1,7 +1,7 @@
 name = "DifferentiationInterface"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
 authors = ["Guillaume Dalle", "Adrian Hill"]
-version = "0.6.52"
+version = "0.7.0"
 
 [deps]
 ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
@@ -52,11 +52,14 @@ DifferentiationInterfaceTrackerExt = "Tracker"
 DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"]
 
 [compat]
+Aqua = "0.8.12"
 ADTypes = "1.13.0"
 ChainRulesCore = "1.23.0"
+ComponentArrays = "0.15.27"
+DataFrames = "1.7.0"
 DiffResults = "1.1.0"
 Diffractor = "=0.2.6"
-Enzyme = "0.13.17"
+Enzyme = "0.13.39"
 EnzymeCore = "0.8.8"
 ExplicitImports = "1.10.1"
 FastDifferentiation = "0.4.3"
@@ -65,16 +68,22 @@ FiniteDifferences = "0.12.31"
 ForwardDiff = "0.10.36,1"
 GPUArraysCore = "0.2"
 GTPSA = "1.4.0"
-JuliaFormatter = "1"
-LinearAlgebra = "<0.0.1,1"
+JET = "0.9"
+JLArrays = "0.2.0"
+JuliaFormatter = "1,2"
+LinearAlgebra = "1"
 Mooncake = "0.4.88"
+Pkg = "1"
 PolyesterForwardDiff = "0.1.2"
+Random = "1"
 ReverseDiff = "1.15.1"
-SparseArrays = "<0.0.1,1"
+SparseArrays = "1"
 SparseConnectivityTracer = "0.6.14"
 SparseMatrixColorings = "0.4.9"
+StableRNGs = "1.0.1"
 StaticArrays = "1.9.7"
 Symbolics = "5.27.1, 6"
+Test = "1"
 Tracker = "0.2.33"
 Zygote = "0.6.69, 0.7"
 julia = "1.10"

DifferentiationInterface/README.md

@@ -38,7 +38,7 @@ We support the following backends defined by [ADTypes.jl](https://github.com/Sci
 - [FiniteDifferences.jl](https://github.com/JuliaDiff/FiniteDifferences.jl)
 - [ForwardDiff.jl](https://github.com/JuliaDiff/ForwardDiff.jl)
 - [GTPSA.jl](https://github.com/bmad-sim/GTPSA.jl)
-- [Mooncake.jl](https://github.com/compintell/Mooncake.jl)
+- [Mooncake.jl](https://github.com/chalk-lab/Mooncake.jl)
 - [PolyesterForwardDiff.jl](https://github.com/JuliaDiff/PolyesterForwardDiff.jl)
 - [ReverseDiff.jl](https://github.com/JuliaDiff/ReverseDiff.jl)
 - [Symbolics.jl](https://github.com/JuliaSymbolics/Symbolics.jl)
@@ -90,18 +90,22 @@ To improve your performance by up to several orders of magnitude compared to thi
 
 ## Citation
 
-Whenever you refer to this package or the ideas it contains, please cite our preprint [*Sparser, Better, Faster, Stronger: Efficient Automatic Differentiation for Sparse Jacobians and Hessians*](https://arxiv.org/abs/2501.17737) and DifferentiationInterface.jl's inspiration [AbstractDifferentiation.jl](https://github.com/JuliaDiff/AbstractDifferentiation.jl).
+Whenever you refer to this package or the ideas it contains, please cite:
+
+1. our preprint [*A Common Interface for Automatic Differentiation*](https://arxiv.org/abs/2505.05542);
+2. our inspiration [AbstractDifferentiation.jl](https://github.com/JuliaDiff/AbstractDifferentiation.jl).
+
 You can use the provided [`CITATION.cff`](https://github.com/JuliaDiff/DifferentiationInterface.jl/blob/main/CITATION.cff) file or the following BibTeX entries:
 
-```bibtex   
-@misc{hill2025sparserbetterfasterstronger,
-      title={Sparser, Better, Faster, Stronger: Efficient Automatic Differentiation for Sparse Jacobians and Hessians}, 
-      author={Adrian Hill and Guillaume Dalle},
+```bibtex
+@misc{dalle2025commoninterfaceautomaticdifferentiation,
+      title={A Common Interface for Automatic Differentiation}, 
+      author={Guillaume Dalle and Adrian Hill},
       year={2025},
-      eprint={2501.17737},
+      eprint={2505.05542},
       archivePrefix={arXiv},
-      primaryClass={cs.LG},
-      url={https://arxiv.org/abs/2501.17737}, 
+      primaryClass={cs.MS},
+      url={https://arxiv.org/abs/2505.05542}, 
 }
 
 @misc{schäfer2022abstractdifferentiationjlbackendagnosticdifferentiableprogramming,

DifferentiationInterface/ext/DifferentiationInterfaceEnzymeExt/DifferentiationInterfaceEnzymeExt.jl

@@ -30,6 +30,7 @@ using EnzymeCore:
     Split,
     WithPrimal
 using Enzyme:
+    Enzyme,
     autodiff,
     autodiff_thunk,
     create_shadows,
@@ -53,4 +54,6 @@ include("forward_twoarg.jl")
 include("reverse_onearg.jl")
 include("reverse_twoarg.jl")
 
+include("init.jl")
+
 end # module