Skip to content

Commit 0da5d34

Browse files
github-actions[bot]actions-user
github-actions[bot]
and
actions-user
authored
🚀 Automatically rebuilt derived files (#2375)
Co-authored-by: GitHub Action <action@github.com>
1 parent 09fff6e commit 0da5d34

6 files changed

Lines changed: 1343 additions & 1258 deletions

File tree

‎_config.yml‎

Lines changed: 38 additions & 21 deletions
Original file line numberDiff line numberDiff line change
@@ -8027,6 +8027,44 @@ ontologies:
80278027
- disease
80288028
title: Sickle Cell Disease Ontology
80298029
tracker: https://github.com/scdodev/scdo-ontology/issues
8030+
- activity_status: orphaned
8031+
build:
8032+
method: obo2owl
8033+
source_url: http://variationontology.org/vario_download/vario.obo
8034+
contact:
8035+
email: mauno.vihinen@med.lu.se
8036+
github: maunov
8037+
label: Mauno Vihinen
8038+
orcid: 0000-0002-9614-7976
8039+
description: Variation Ontology, VariO, is an ontology for standardized, systematic
8040+
description of effects, consequences and mechanisms of variations.
8041+
domain: biological systems
8042+
homepage: http://variationontology.org
8043+
id: vario
8044+
layout: ontology_detail
8045+
license:
8046+
label: CC BY 4.0
8047+
logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
8048+
url: https://creativecommons.org/licenses/by/4.0/
8049+
ontology_purl: http://purl.obolibrary.org/obo/vario.owl
8050+
preferredPrefix: VariO
8051+
products:
8052+
- id: vario.owl
8053+
ontology_purl: http://purl.obolibrary.org/obo/vario.owl
8054+
title: VariO main release in OWL
8055+
- id: vario.obo
8056+
ontology_purl: http://purl.obolibrary.org/obo/vario.obo
8057+
title: VariO in OBO format
8058+
publications:
8059+
- id: https://www.ncbi.nlm.nih.gov/pubmed/24162187
8060+
title: Variation Ontology for annotation of variation effects and mechanisms
8061+
- id: https://www.ncbi.nlm.nih.gov/pubmed/24533660
8062+
title: 'Variation ontology: annotator guide'
8063+
- id: https://www.ncbi.nlm.nih.gov/pubmed/25616435
8064+
title: Types and effects of protein variations
8065+
repository: N/A
8066+
title: Variation Ontology
8067+
tracker: http://variationontology.org/instructions.shtml
80308068
- activity_status: orphaned
80318069
build:
80328070
infallible: 1
@@ -8116,27 +8154,6 @@ ontologies:
81168154
- behavior
81178155
title: Social Insect Behavior Ontology
81188156
tracker: https://github.com/obophenotype/sibo/issues
8119-
- activity_status: orphaned
8120-
build:
8121-
method: obo2owl
8122-
source_url: http://variationontology.org/vario_download/vario.obo
8123-
contact:
8124-
email: mauno.vihinen@med.lu.se
8125-
label: Mauno Vihinen
8126-
description: Variation Ontology, VariO, is an ontology for standardized, systematic
8127-
description of effects, consequences and mechanisms of variations.
8128-
domain: biological systems
8129-
homepage: http://variationontology.org
8130-
id: vario
8131-
layout: ontology_detail
8132-
ontology_purl: http://purl.obolibrary.org/obo/vario.owl
8133-
preferredPrefix: VariO
8134-
products:
8135-
- id: vario.owl
8136-
ontology_purl: http://purl.obolibrary.org/obo/vario.owl
8137-
- id: vario.obo
8138-
ontology_purl: http://purl.obolibrary.org/obo/vario.obo
8139-
title: Variation Ontology
81408157
- activity_status: inactive
81418158
build:
81428159
checkout: git clone https://github.com/obophenotype/human-developmental-anatomy-ontology.git

‎registry/obo_prefixes.ttl‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -188,11 +188,11 @@
188188
,[ sh:prefix "KISAO" ; sh:namespace "http://purl.obolibrary.org/obo/KISAO_"]
189189
,[ sh:prefix "SBO" ; sh:namespace "http://purl.obolibrary.org/obo/SBO_"]
190190
,[ sh:prefix "SCDO" ; sh:namespace "http://purl.obolibrary.org/obo/SCDO_"]
191+
,[ sh:prefix "VariO" ; sh:namespace "http://purl.obolibrary.org/obo/VariO_"]
191192
,[ sh:prefix "FIX" ; sh:namespace "http://purl.obolibrary.org/obo/FIX_"]
192193
,[ sh:prefix "MAMO" ; sh:namespace "http://purl.obolibrary.org/obo/MAMO_"]
193194
,[ sh:prefix "REX" ; sh:namespace "http://purl.obolibrary.org/obo/REX_"]
194195
,[ sh:prefix "SIBO" ; sh:namespace "http://purl.obolibrary.org/obo/SIBO_"]
195-
,[ sh:prefix "VariO" ; sh:namespace "http://purl.obolibrary.org/obo/VariO_"]
196196
,[ sh:prefix "AEO" ; sh:namespace "http://purl.obolibrary.org/obo/AEO_"]
197197
,[ sh:prefix "CEPH" ; sh:namespace "http://purl.obolibrary.org/obo/CEPH_"]
198198
,[ sh:prefix "EHDAA2" ; sh:namespace "http://purl.obolibrary.org/obo/EHDAA2_"]

‎registry/ontologies.jsonld‎

Lines changed: 54 additions & 29 deletions
Original file line numberDiff line numberDiff line change
@@ -11299,6 +11299,60 @@
1129911299
"title": "Sickle Cell Disease Ontology",
1130011300
"tracker": "https://github.com/scdodev/scdo-ontology/issues"
1130111301
},
11302+
{
11303+
"activity_status": "orphaned",
11304+
"build": {
11305+
"method": "obo2owl",
11306+
"source_url": "http://variationontology.org/vario_download/vario.obo"
11307+
},
11308+
"contact": {
11309+
"email": "mauno.vihinen@med.lu.se",
11310+
"github": "maunov",
11311+
"label": "Mauno Vihinen",
11312+
"orcid": "0000-0002-9614-7976"
11313+
},
11314+
"description": "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.",
11315+
"domain": "biological systems",
11316+
"homepage": "http://variationontology.org",
11317+
"id": "vario",
11318+
"layout": "ontology_detail",
11319+
"license": {
11320+
"label": "CC BY 4.0",
11321+
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
11322+
"url": "https://creativecommons.org/licenses/by/4.0/"
11323+
},
11324+
"ontology_purl": "http://purl.obolibrary.org/obo/vario.owl",
11325+
"preferredPrefix": "VariO",
11326+
"products": [
11327+
{
11328+
"id": "vario.owl",
11329+
"ontology_purl": "http://purl.obolibrary.org/obo/vario.owl",
11330+
"title": "VariO main release in OWL"
11331+
},
11332+
{
11333+
"id": "vario.obo",
11334+
"ontology_purl": "http://purl.obolibrary.org/obo/vario.obo",
11335+
"title": "VariO in OBO format"
11336+
}
11337+
],
11338+
"publications": [
11339+
{
11340+
"id": "https://www.ncbi.nlm.nih.gov/pubmed/24162187",
11341+
"title": "Variation Ontology for annotation of variation effects and mechanisms"
11342+
},
11343+
{
11344+
"id": "https://www.ncbi.nlm.nih.gov/pubmed/24533660",
11345+
"title": "Variation ontology: annotator guide"
11346+
},
11347+
{
11348+
"id": "https://www.ncbi.nlm.nih.gov/pubmed/25616435",
11349+
"title": "Types and effects of protein variations"
11350+
}
11351+
],
11352+
"repository": "N/A",
11353+
"title": "Variation Ontology",
11354+
"tracker": "http://variationontology.org/instructions.shtml"
11355+
},
1130211356
{
1130311357
"activity_status": "orphaned",
1130411358
"build": {
@@ -11418,35 +11472,6 @@
1141811472
"title": "Social Insect Behavior Ontology",
1141911473
"tracker": "https://github.com/obophenotype/sibo/issues"
1142011474
},
11421-
{
11422-
"activity_status": "orphaned",
11423-
"build": {
11424-
"method": "obo2owl",
11425-
"source_url": "http://variationontology.org/vario_download/vario.obo"
11426-
},
11427-
"contact": {
11428-
"email": "mauno.vihinen@med.lu.se",
11429-
"label": "Mauno Vihinen"
11430-
},
11431-
"description": "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.",
11432-
"domain": "biological systems",
11433-
"homepage": "http://variationontology.org",
11434-
"id": "vario",
11435-
"layout": "ontology_detail",
11436-
"ontology_purl": "http://purl.obolibrary.org/obo/vario.owl",
11437-
"preferredPrefix": "VariO",
11438-
"products": [
11439-
{
11440-
"id": "vario.owl",
11441-
"ontology_purl": "http://purl.obolibrary.org/obo/vario.owl"
11442-
},
11443-
{
11444-
"id": "vario.obo",
11445-
"ontology_purl": "http://purl.obolibrary.org/obo/vario.obo"
11446-
}
11447-
],
11448-
"title": "Variation Ontology"
11449-
},
1145011475
{
1145111476
"activity_status": "inactive",
1145211477
"build": {

0 commit comments

Comments
 (0)