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2 | 2 | layout: ontology_detail |
3 | 3 | id: fbbi |
4 | 4 | title: Biological Imaging Methods Ontology |
5 | | -build: |
6 | | - method: obo2owl |
7 | | - source_url: https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo |
8 | | -contact: |
9 | | - email: wawong@gmail.com |
10 | | - github: wawong |
11 | | - label: Willy Wong |
12 | | - orcid: 0000-0002-8841-5870 |
13 | | -description: A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. |
| 5 | +description: >- |
| 6 | + An ontology for the description of sample preparation, visualization, and |
| 7 | + imaging methods used in biomedical research. |
14 | 8 | domain: investigations |
15 | | -homepage: http://cellimagelibrary.org/ |
| 9 | +homepage: https://github.com/foundingGIDE/fbbi |
| 10 | +repository: https://github.com/foundingGIDE/fbbi |
| 11 | +tracker: https://github.com/foundingGIDE/fbbi/issues |
16 | 12 | license: |
17 | | - label: CC BY 4.0 |
18 | 13 | url: https://creativecommons.org/licenses/by/4.0/ |
19 | | -preferredPrefix: FBbi |
| 14 | + label: CC BY 4.0 |
| 15 | +contact: |
| 16 | + orcid: 0000-0002-6095-8718 |
| 17 | + email: damien@gerbi-gmb.de |
| 18 | + label: Damien Goutte-Gattat |
| 19 | + github: gouttegd |
| 20 | +build: |
| 21 | + checkout: git clone https://github.com/foundingGIDE/fbbi.git |
| 22 | + system: git |
| 23 | + path: "." |
20 | 24 | products: |
21 | | -- id: fbbi.owl |
22 | | -repository: https://github.com/CRBS/Biological_Imaging_Methods_Ontology |
| 25 | + - id: fbbi.owl |
| 26 | + - id: fbbi.obo |
| 27 | + - id: fbbi/fbbi-base.owl |
| 28 | + - id: fbbi/fbbi-base.obo |
| 29 | +preferredPrefix: FBbi |
23 | 30 | tags: |
24 | | -- imaging experiments |
25 | | -tracker: https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues |
26 | | -activity_status: inactive |
| 31 | + - imaging experiments |
| 32 | +dependencies: |
| 33 | + - id: ro |
| 34 | + - id: omo |
| 35 | + - id: iao |
| 36 | +usages: |
| 37 | + - user: https://flybase.org |
| 38 | + description: FlyBase uses FBbi to annotate its image collection. |
| 39 | + examples: |
| 40 | + - description: images annotated to "scanning electron micrograph" |
| 41 | + url: https://flybase.org/cgi-bin/fbcvquery.pl?mode=subtreehits&cvterm=FBbi:00000257%3EFBim |
| 42 | + - user: https://virtualflybrain.org |
| 43 | + description: Virtual Fly Brain uses FBbi to annotate images. |
| 44 | + - user: https://www.cellimagelibrary.org |
| 45 | + description: The Cell Image Library uses FBbi to annotate images. |
| 46 | + examples: |
| 47 | + - description: An image annotate with several terms from FBbi. |
| 48 | + url: https://www.cellimagelibrary.org/images/13654 |
| 49 | +activity_status: active |
27 | 50 | --- |
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