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Newsletter issue 8 (#2739)
* Create 2025-06-16-8th-issue-newsletter.md * Update 2025-06-16-8th-issue-newsletter.md * Add files via upload * Rename The Cell Ontology Issue 8.png to single-cell omics.png * Rename Assembly and reasoning over semantic Issue 8.png to SeMRA Issue 8.png * Rename Suggestions for extending the FAIR Principles Issue 8.png to extending FAIR Principles Issue 8.png * Rename Bioportal Issue 8.png to bioportal_newsletter.png * Rename Bjoern Peters.png to bjoern_newsletter.png * Rename SeMRA Issue 8.png to semra_newsletter.png * Rename Lynn Schriml issue 8.png to schriml_newsletter.png * Rename extending FAIR Principles Issue 8.png to fair_principles_newsletter.png * Rename upheno.png to upheno_newsletter.png * Rename single-cell omics.png to single_cell_omics_newsletter.png * Update 2025-06-16-8th-issue-newsletter.md * Update 2025-06-16-8th-issue-newsletter.md * Some minor fixed to newsletter 8 --------- Co-authored-by: Nico Matentzoglu <nicolas.matentzoglu@gmail.com>
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_posts/2024-10-14-6th-issue-newsletter.md

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@@ -129,7 +129,7 @@ The research outlines the Knowledge Graph Change Language (KGCL), a new standard
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This preprint describes the development of the Unified Phenotype Ontology (uPheno), a framework designed to integrate and standardize phenotype data across multiple species. uPheno addresses the challenge of integrating phenotype data from different sources by providing a consistent and logical framework for describing phenotypes. It utilizes a library of design patterns to define phenotype terms, enabling the development of a hierarchical vocabulary that groups species-specific phenotype terms under species-neutral categories. uPheno also includes mappings between species-specific ontologies, facilitating cross-species comparisons and enabling researchers to identify genes with similar phenotypic effects across different organisms. The paper highlights the potential applications of uPheno in various areas of biological research, including clinical diagnostics, variant prioritization, and disease modeling.
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<img src="https://obofoundry.org/images/newsletter/upheno.png" style="height: 400px" alt="uPheno model" />
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<img src="https://obofoundry.org/images/newsletter/upheno_newsletter.png" style="height: 400px" alt="uPheno model" />
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(Figure from Nicolas Matentzoglu, Susan M Bello, Ray Stefancsik, Sarah M. Alghamdi, Anna V. Anagnostopoulos, James P. Balhoff, Meghan A. Balk, Yvonne M. Bradford, Yasemin Bridges, Tiffany J. Callahan, Harry Caufield, Alayne Cuzick, Leigh C Carmody, Anita R. Caron, Vinicius de Souza, Stacia R. Engel, Petra Fey, Malcolm Fisher, Sarah Gehrke, Christian Grove, Peter Hansen, Nomi L. Harris, Midori A. Harris, Laura Harris, Arwa Ibrahim, Julius O.B. Jacobsen, Sebastian Köhler, Julie A. McMurry, Violeta Munoz-Fuentes, Monica C. Munoz-Torres, Helen Parkinson, Zoë M Pendlington, Clare Pilgrim, Sofia MC Robb, Peter N. Robinson, James Seager, Erik Segerdell, Damian Smedley, Elliot Sollis, Sabrina Toro, Nicole Vasilevsky, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall, James A. McLaughlin, and David Osumi-Sutherland. The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics. 2024 Sep 20. [https://www.biorxiv.org/content/10.1101/2024.09.18.613276v1](https://www.biorxiv.org/content/10.1101/2024.09.18.613276v1)

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