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Update metadata for FBbi.
Since early 2026, the Biological Imaging Methods Ontology (`FBbi`) is actively maintained again, under the new combined leadership of German BioImaging e.V. and the EMBL-EBI BioImage Archive. This commit updates the OBO Foundry metadata accordingly.
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ontology/fbbi.md

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layout: ontology_detail
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id: fbbi
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title: Biological Imaging Methods Ontology
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build:
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method: obo2owl
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source_url: https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo
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contact:
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email: wawong@gmail.com
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github: wawong
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label: Willy Wong
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orcid: 0000-0002-8841-5870
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description: A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.
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description: >-
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An ontology for the description of sample preparation, visualization, and
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imaging methods used in biomedical research.
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domain: investigations
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homepage: http://cellimagelibrary.org/
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homepage: https://github.com/foundingGIDE/fbbi
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repository: https://github.com/foundingGIDE/fbbi
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tracker: https://github.com/foundingGIDE/fbbi/issues
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license:
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label: CC BY 4.0
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url: https://creativecommons.org/licenses/by/4.0/
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preferredPrefix: FBbi
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label: CC BY 4.0
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contact:
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orcid: 0000-0002-6095-8718
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email: damien@gerbi-gmb.de
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label: Damien Goutte-Gattat
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github: gouttegd
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build:
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checkout: git clone https://github.com/foundingGIDE/fbbi.git
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system: git
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path: "."
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products:
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- id: fbbi.owl
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repository: https://github.com/CRBS/Biological_Imaging_Methods_Ontology
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- id: fbbi.owl
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- id: fbbi.obo
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- id: fbbi/fbbi-base.owl
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- id: fbbi/fbbi-base.obo
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preferredPrefix: FBbi
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tags:
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- imaging experiments
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tracker: https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues
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activity_status: inactive
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- imaging experiments
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dependencies:
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- id: iao
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- id: omo
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- id: ro
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usages:
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- user: https://flybase.org
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description: FlyBase uses FBbi to annotate its image collection.
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examples:
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- description: images annotated to "scanning electron micrograph"
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url: https://flybase.org/cgi-bin/fbcvquery.pl?mode=subtreehits&cvterm=FBbi:00000257%3EFBim
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- user: https://virtualflybrain.org
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description: Virtual Fly Brain uses FBbi to annotate images.
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- user: https://www.cellimagelibrary.org
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description: The Cell Image Library uses FBbi to annotate images.
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examples:
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- description: An image annotate with several terms from FBbi.
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url: https://www.cellimagelibrary.org/images/13654
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activity_status: active
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