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Merge branch 'master' into matentzn-patch-1
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‎_config.yml‎

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@@ -2062,6 +2062,34 @@ ontologies:
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- disease
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title: Epilepsy Ontology
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tracker: https://github.com/SCAI-BIO/EpilepsyOntology/issues
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- activity_status: active
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contact:
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email: xyz19940216@163.com
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github: DarkKnight0-0
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label: Xingyun Liu
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orcid: 0000-0002-9295-2767
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description: A core reference ontology built upon BFO about exercise medicine and
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it contains the related terms for healthy people, people with chronic conditions
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and people living with diability to exercise.
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domain: health
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homepage: https://github.com/Exercise-Medicine-Ontology/EXMO
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id: exmo
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layout: ontology_detail
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license:
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label: CC BY 4.0
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logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
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url: https://creativecommons.org/licenses/by/4.0/
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ontology_purl: http://purl.obolibrary.org/obo/exmo.owl
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preferredPrefix: EXMO
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products:
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- id: exmo.owl
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ontology_purl: http://purl.obolibrary.org/obo/exmo.owl
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publications:
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- id: https://www.ncbi.nlm.nih.gov/pubmed/39695140
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title: Core reference ontology for individualized exercise prescription
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repository: https://github.com/Exercise-Medicine-Ontology/EXMO
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title: Exercise Medicine Ontology
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tracker: https://github.com/Exercise-Medicine-Ontology/EXMO/issues
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- activity_status: active
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contact:
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email: annethessen@gmail.com
@@ -4289,7 +4317,7 @@ ontologies:
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abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with
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OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.
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domain: health
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homepage: https://github.com/NCI-Thesaurus/thesaurus-obo-edition
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homepage: https://github.com/ncit-obo-org/ncit-obo-edition
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id: ncit
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layout: ontology_detail
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license:
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- id: ncit.obo
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ontology_purl: http://purl.obolibrary.org/obo/ncit.obo
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title: NCIt OBO Edition OBO format
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- description: This version replaces NCIt terms with direct references to terms
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from other domain-specific OBO Library ontologies (e.g. cell types, cellular
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components, anatomy), supporting cross-ontology reasoning. The current release
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incorporates CL (cell types) and Uberon (anatomy).
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id: ncit/ncit-plus.owl
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mireots_from:
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- cl
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- uberon
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ontology_purl: http://purl.obolibrary.org/obo/ncit/ncit-plus.owl
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title: NCIt Plus
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- description: This is a subset extracted from NCIt Plus, based on the [NCIt Neoplasm
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Core value set](https://evs.nci.nih.gov/ftp1/NCI_Thesaurus/Neoplasm/About_Core.html)
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as a starting point.
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id: ncit/neoplasm-core.owl
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ontology_purl: http://purl.obolibrary.org/obo/ncit/neoplasm-core.owl
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title: NCIt Plus Neoplasm Core
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repository: https://github.com/NCI-Thesaurus/thesaurus-obo-edition
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repository: https://github.com/ncit-obo-org/ncit-obo-edition
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title: NCI Thesaurus OBO Edition
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tracker: https://github.com/NCI-Thesaurus/thesaurus-obo-edition/issues
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tracker: https://github.com/ncit-obo-org/ncit-obo-edition/issues
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- activity_status: active
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build:
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method: owl2obo

‎ontology/exmo.md‎

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---
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layout: ontology_detail
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id: exmo
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title: Exercise Medicine Ontology
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contact:
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email: xyz19940216@163.com
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github: DarkKnight0-0
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label: Xingyun Liu
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orcid: 0000-0002-9295-2767
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description: A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.
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domain: health
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homepage: https://github.com/Exercise-Medicine-Ontology/EXMO
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license:
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label: CC BY 4.0
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url: https://creativecommons.org/licenses/by/4.0/
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preferredPrefix: EXMO
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products:
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- id: exmo.owl
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publications:
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- id: https://www.ncbi.nlm.nih.gov/pubmed/39695140
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title: Core reference ontology for individualized exercise prescription
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repository: https://github.com/Exercise-Medicine-Ontology/EXMO
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tracker: https://github.com/Exercise-Medicine-Ontology/EXMO/issues
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activity_status: active
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---

‎ontology/ncit.md‎

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orcid: 0000-0000-0000-0000
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description: NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.
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domain: health
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homepage: https://github.com/NCI-Thesaurus/thesaurus-obo-edition
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homepage: https://github.com/ncit-obo-org/ncit-obo-edition
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license:
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label: CC BY 4.0
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url: https://creativecommons.org/licenses/by/4.0/
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description: A direct transformation of the standard NCIt content using OBO-style term and ontology IRIs and annotation properties.
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- id: ncit.obo
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title: NCIt OBO Edition OBO format
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- id: ncit/ncit-plus.owl
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title: NCIt Plus
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description: This version replaces NCIt terms with direct references to terms from other domain-specific OBO Library ontologies (e.g. cell types, cellular components, anatomy), supporting cross-ontology reasoning. The current release incorporates CL (cell types) and Uberon (anatomy).
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mireots_from:
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- cl
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- uberon
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- id: ncit/neoplasm-core.owl
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title: NCIt Plus Neoplasm Core
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description: This is a subset extracted from NCIt Plus, based on the [NCIt Neoplasm Core value set](https://evs.nci.nih.gov/ftp1/NCI_Thesaurus/Neoplasm/About_Core.html) as a starting point.
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repository: https://github.com/NCI-Thesaurus/thesaurus-obo-edition
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tracker: https://github.com/NCI-Thesaurus/thesaurus-obo-edition/issues
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repository: https://github.com/ncit-obo-org/ncit-obo-edition
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tracker: https://github.com/ncit-obo-org/ncit-obo-edition/issues
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activity_status: active
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---
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‎registry/obo_context.jsonld‎

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"@id": "http://purl.obolibrary.org/obo/EV_",
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"@prefix": true
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},
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"EXMO": {
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"@id": "http://purl.obolibrary.org/obo/EXMO_",
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"@prefix": true
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},
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"ExO": {
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"@id": "http://purl.obolibrary.org/obo/ExO_",
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"@prefix": true

‎registry/obo_prefixes.ttl‎

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,[ sh:prefix "EMAPA" ; sh:namespace "http://purl.obolibrary.org/obo/EMAPA_"]
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,[ sh:prefix "ENVO" ; sh:namespace "http://purl.obolibrary.org/obo/ENVO_"]
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,[ sh:prefix "EPIO" ; sh:namespace "http://purl.obolibrary.org/obo/EPIO_"]
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,[ sh:prefix "EXMO" ; sh:namespace "http://purl.obolibrary.org/obo/EXMO_"]
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,[ sh:prefix "ExO" ; sh:namespace "http://purl.obolibrary.org/obo/ExO_"]
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,[ sh:prefix "FAO" ; sh:namespace "http://purl.obolibrary.org/obo/FAO_"]
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,[ sh:prefix "FBbt" ; sh:namespace "http://purl.obolibrary.org/obo/FBbt_"]

‎registry/ontologies.jsonld‎

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"title": "Epilepsy Ontology",
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"tracker": "https://github.com/SCAI-BIO/EpilepsyOntology/issues"
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},
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{
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"activity_status": "active",
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"contact": {
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"email": "xyz19940216@163.com",
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"github": "DarkKnight0-0",
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"label": "Xingyun Liu",
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"orcid": "0000-0002-9295-2767"
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},
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"description": "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
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"domain": "health",
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"homepage": "https://github.com/Exercise-Medicine-Ontology/EXMO",
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"id": "exmo",
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"layout": "ontology_detail",
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"license": {
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"label": "CC BY 4.0",
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"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
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"url": "https://creativecommons.org/licenses/by/4.0/"
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},
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"ontology_purl": "http://purl.obolibrary.org/obo/exmo.owl",
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"preferredPrefix": "EXMO",
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"products": [
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{
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"id": "exmo.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/exmo.owl"
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}
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],
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"publications": [
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{
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"id": "https://www.ncbi.nlm.nih.gov/pubmed/39695140",
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"title": "Core reference ontology for individualized exercise prescription"
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}
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],
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"repository": "https://github.com/Exercise-Medicine-Ontology/EXMO",
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"title": "Exercise Medicine Ontology",
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"tracker": "https://github.com/Exercise-Medicine-Ontology/EXMO/issues"
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},
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{
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"activity_status": "active",
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"contact": {
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},
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"description": "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.",
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"domain": "health",
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"homepage": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition",
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"homepage": "https://github.com/ncit-obo-org/ncit-obo-edition",
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"id": "ncit",
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"layout": "ontology_detail",
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"license": {
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"id": "ncit.obo",
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"ontology_purl": "http://purl.obolibrary.org/obo/ncit.obo",
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"title": "NCIt OBO Edition OBO format"
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},
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{
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"description": "This version replaces NCIt terms with direct references to terms from other domain-specific OBO Library ontologies (e.g. cell types, cellular components, anatomy), supporting cross-ontology reasoning. The current release incorporates CL (cell types) and Uberon (anatomy).",
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"id": "ncit/ncit-plus.owl",
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"mireots_from": [
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"cl",
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"uberon"
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],
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"ontology_purl": "http://purl.obolibrary.org/obo/ncit/ncit-plus.owl",
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"title": "NCIt Plus"
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},
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{
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"description": "This is a subset extracted from NCIt Plus, based on the [NCIt Neoplasm Core value set](https://evs.nci.nih.gov/ftp1/NCI_Thesaurus/Neoplasm/About_Core.html) as a starting point.",
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"id": "ncit/neoplasm-core.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/ncit/neoplasm-core.owl",
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"title": "NCIt Plus Neoplasm Core"
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}
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],
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"repository": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition",
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"repository": "https://github.com/ncit-obo-org/ncit-obo-edition",
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"title": "NCI Thesaurus OBO Edition",
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"tracker": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition/issues"
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"tracker": "https://github.com/ncit-obo-org/ncit-obo-edition/issues"
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},
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{
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"activity_status": "active",

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