Merge branch 'master' into nlharris-patch-8

Author: nlharris

_config.yml

@@ -414,7 +414,7 @@ ontologies:
     ontology_purl: http://purl.obolibrary.org/obo/BMONT.owl
   repository: https://github.com/SCAI-BIO/BiomarkerOntology
   title: Biomarker Ontology
-  tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issue
+  tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issues
 - activity_status: active
   build:
     checkout: git clone https://github.com/obophenotype/biological-spatial-ontology.git

docs/StandardizationGuidelines.md

@@ -5,21 +5,20 @@ title: Ontology Standardization Guidelines
 
 ### Social
 
-SOCIAL External axioms #1443 & #1991 | possible new "what to do with terms" principle (can be p14)
 
 ### Communication
 
-COMMUNICATION Ontology subsets documentation #466
-COMMUNICATION Referring to taxa not in NCBITaxon #434
-COMMUNICATION Document how to add logo #72
-COMMUNICATION Short ontology descriptions #1968
-COMMUNICATION Documentation for license #1840
+COMMUNICATION Ontology subsets documentation [#466](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/446)
+COMMUNICATION Referring to taxa not in NCBITaxon [#434](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/434)
+COMMUNICATION Document how to add logo [#72](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/72)
+COMMUNICATION Short ontology descriptions [#1968](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1968)
+COMMUNICATION Documentation for license [#1840](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1840)
 
 ### Content
 
-CONTENT Discourage BFO shadow classes #1539
+CONTENT Discourage BFO shadow classes [#1539](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1539)
 CONTENT? Ignoring NCIT (no issue, but has come up that NCIT is not well-formed enough to be a concern re: things like overlap)
-METADATA Term adoption #2330 (also #2324)
+METADATA Term adoption [#2330](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2330) and [#2324](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2324)
 
 ### Technical
 
@@ -33,16 +32,16 @@ Not yet classified:
     Every ontology MUST be coherent when classified together with RO, BFO, and COB
     Every ontology SHOULD be coherent when classified together with all its base-dependencies
 
-METADATA Versioning term identifiers #1347 /
-METADATA Linking term to discussion on tracker #1097
-METADATA Language tags #479 (also #325)
-METADATA Synonym types #2450
-METADATA Ontology root terms annotation #2149
-METADATA Publications metadata #1671
-METADATA Ontology merging #1548
-METADATA Exemplar classes #899
-METADATA Ontology metadata requirements #1365
-STANDARDIZATION? Standardized xref prefixes in ontologies #525
-Proposals here: #482 (comment)
-METADATA Modeling metaclasses #2454 (thanks @cthoyt, that's a good addition)
-METADATA Standardizing how imported ontologies are noted #424
+METADATA Versioning term identifiers [#1347](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1347)
+METADATA Linking term to discussion on tracker [#1097](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1097)
+METADATA Language tags [#479](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/479) and  [#325](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/325)
+METADATA Synonym types [#2450](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2450)
+METADATA Ontology root terms annotation [#2149](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2149)
+METADATA Publications metadata [#1671](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1671)
+METADATA Ontology merging [#1548](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1548)
+METADATA Exemplar classes [#899](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/899)
+METADATA Ontology metadata requirements [#1365](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/1365)
+STANDARDIZATION? Standardized xref prefixes in ontologies [#525](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/525)
+Proposals here: [#482](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/482) (comment)
+METADATA Modeling metaclasses [#2454](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2454)
+METADATA Standardizing how imported ontologies are noted [#424](https://github.com/OBOFoundry/OBOFoundry.github.io/issues/424)

docs/roles/DashboardManager.md

@@ -4,4 +4,7 @@ permalink: /roles/dashboard-manager
 title: Dashboard Manager
 ---
 
-The Dashboard Manager has these basic duties:
+The [OBO Foundry dashboard](https://dashboard.obofoundry.org/) checks ontologies for adherence to OBO Foundry principles. The Dashboard Manager's jobs are:
+1. Update the dashboard once per month
+1. Fix important bugs in OBO-Dashboard if they come up (should be rare)
+1. Work with OBO Ops if needed to find people who can update the dashboard code when new principles are added or existing ones are changed.

ontology/bmont.md

@@ -22,6 +22,6 @@ products:
 - id: BMONT.owl
   description: Includes axioms linking to other ontologies, but no imports of those ontologies
 repository: https://github.com/SCAI-BIO/BiomarkerOntology
-tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issue
+tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issues
 activity_status: active
 ---

principles/fp-001-open.md

@@ -29,7 +29,7 @@ Note: CC-BY licenses allow others to distribute, remix, tweak, and build upon th
 
 3. If an individual term is reused without change to the definition, the original term IRI should be used. If the definition of a term (either text or logical) is changed, the original term IRI should not be reused. Suggestions for changes or improvements to term definitions should be submitted to the appropriate ontology issue tracker.
 
-4. Regardless of which license an ontology uses, we strongly request and recommend that any reuse of an ontology attributes the source in accordance with scientific norms and the [OBO Citation and Attribution Policy](http://www.obofoundry.org/docs/Citation).
+4. Regardless of which license an ontology uses, we strongly request and recommend that any reuse of an ontology attributes the source in accordance with scientific norms and the [OBO Citation and Attribution Policy]({% link citation/Citation.md %}).
 
 ## Implementation
 

registry/ontologies.jsonld

@@ -549,7 +549,7 @@
             ],
             "repository": "https://github.com/SCAI-BIO/BiomarkerOntology",
             "title": "Biomarker Ontology",
-            "tracker": "https://github.com/SCAI-BIO/BiomarkerOntology/issue"
+            "tracker": "https://github.com/SCAI-BIO/BiomarkerOntology/issues"
         },
         {
             "activity_status": "active",