Merge branch 'master' into nataled-patch-2-1

Author: nataled

_config.yml

@@ -385,6 +385,36 @@ ontologies:
       structure
     type: owl_import
     user: http://obofoundry.org
+- activity_status: active
+  browsers:
+  - label: BioPortal
+    title: BioPortal Ontology Browser
+    url: https://bioportal.bioontology.org/ontologies/BMONT
+  contact:
+    email: alpha.tom.kodamullil@scai.fraunhofer.de
+    github: akodamullil
+    label: Alpha Tom Kodamullil
+    orcid: 0000-0001-9896-3531
+  description: An application ontology that represents comprehensive knowledge involving
+    a variety of fields of medical and biological aspects.
+  domain: health
+  homepage: https://github.com/SCAI-BIO/BiomarkerOntology
+  id: bmont
+  layout: ontology_detail
+  license:
+    label: CC BY 4.0
+    logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
+    url: http://creativecommons.org/licenses/by/4.0/
+  ontology_purl: http://purl.obolibrary.org/obo/bmont.owl
+  preferredPrefix: BMONT
+  products:
+  - description: Includes axioms linking to other ontologies, but no imports of those
+      ontologies
+    id: BMONT.owl
+    ontology_purl: http://purl.obolibrary.org/obo/BMONT.owl
+  repository: https://github.com/SCAI-BIO/BiomarkerOntology
+  title: Biomarker Ontology
+  tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issue
 - activity_status: active
   build:
     checkout: git clone https://github.com/obophenotype/biological-spatial-ontology.git
@@ -1052,7 +1082,7 @@ ontologies:
     system: git
   contact:
     email: lucas.leclere@obs-banyuls.fr
-    github: L-Leclere
+    github: Leclere-L
     label: Lucas Leclere
     orcid: 0000-0002-7440-0467
   dependencies:

faq/index.md

@@ -12,7 +12,7 @@ title: OBO Foundry Frequently Asked Questions
 
 ### Citation
 
-- [How do I cite the OBO Foundry?](/registry/publications.html)
+- [How do I cite the OBO Foundry?](/citation/RelatedPublications.html)
 - [How do I cite a specific ontology?](/docs/Citation.html)
 
 ### Terms

ontology/bmont.md

@@ -0,0 +1,27 @@
+---
+layout: ontology_detail
+id: bmont
+title: Biomarker Ontology
+browsers:
+- title: BioPortal Ontology Browser
+  label: BioPortal
+  url: https://bioportal.bioontology.org/ontologies/BMONT
+contact:
+  email: alpha.tom.kodamullil@scai.fraunhofer.de
+  github: akodamullil
+  label: Alpha Tom Kodamullil
+  orcid: 0000-0001-9896-3531
+description: An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects.
+domain: health
+homepage: https://github.com/SCAI-BIO/BiomarkerOntology
+license:
+  label: CC BY 4.0
+  url: http://creativecommons.org/licenses/by/4.0/
+preferredPrefix: BMONT
+products:
+- id: BMONT.owl
+  description: Includes axioms linking to other ontologies, but no imports of those ontologies
+repository: https://github.com/SCAI-BIO/BiomarkerOntology
+tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issue
+activity_status: active
+---

ontology/clyh.md

@@ -8,7 +8,7 @@ build:
   system: git
 contact:
   email: lucas.leclere@obs-banyuls.fr
-  github: L-Leclere
+  github: Leclere-L
   label: Lucas Leclere
   orcid: 0000-0002-7440-0467
 dependencies:

registry/obo_context.jsonld

@@ -68,6 +68,10 @@
             "@id": "http://purl.obolibrary.org/obo/BILA_",
             "@prefix": true
         },
+        "BMONT": {
+            "@id": "http://purl.obolibrary.org/obo/BMONT_",
+            "@prefix": true
+        },
         "BOOTSTREP": {
             "@id": "http://purl.obolibrary.org/obo/BOOTSTREP_",
             "@prefix": true

registry/obo_prefixes.ttl

@@ -12,6 +12,7 @@
 ,[ sh:prefix "ARO" ; sh:namespace "http://purl.obolibrary.org/obo/ARO_"]
 ,[ sh:prefix "BCO" ; sh:namespace "http://purl.obolibrary.org/obo/BCO_"]
 ,[ sh:prefix "BFO" ; sh:namespace "http://purl.obolibrary.org/obo/BFO_"]
+,[ sh:prefix "BMONT" ; sh:namespace "http://purl.obolibrary.org/obo/BMONT_"]
 ,[ sh:prefix "BSPO" ; sh:namespace "http://purl.obolibrary.org/obo/BSPO_"]
 ,[ sh:prefix "BTO" ; sh:namespace "http://purl.obolibrary.org/obo/BTO_"]
 ,[ sh:prefix "CARO" ; sh:namespace "http://purl.obolibrary.org/obo/CARO_"]

registry/ontologies.jsonld

@@ -513,6 +513,44 @@
                 }
             ]
         },
+        {
+            "activity_status": "active",
+            "browsers": [
+                {
+                    "label": "BioPortal",
+                    "title": "BioPortal Ontology Browser",
+                    "url": "https://bioportal.bioontology.org/ontologies/BMONT"
+                }
+            ],
+            "contact": {
+                "email": "alpha.tom.kodamullil@scai.fraunhofer.de",
+                "github": "akodamullil",
+                "label": "Alpha Tom Kodamullil",
+                "orcid": "0000-0001-9896-3531"
+            },
+            "description": "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects.",
+            "domain": "health",
+            "homepage": "https://github.com/SCAI-BIO/BiomarkerOntology",
+            "id": "bmont",
+            "layout": "ontology_detail",
+            "license": {
+                "label": "CC BY 4.0",
+                "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
+                "url": "http://creativecommons.org/licenses/by/4.0/"
+            },
+            "ontology_purl": "http://purl.obolibrary.org/obo/bmont.owl",
+            "preferredPrefix": "BMONT",
+            "products": [
+                {
+                    "description": "Includes axioms linking to other ontologies, but no imports of those ontologies",
+                    "id": "BMONT.owl",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/BMONT.owl"
+                }
+            ],
+            "repository": "https://github.com/SCAI-BIO/BiomarkerOntology",
+            "title": "Biomarker Ontology",
+            "tracker": "https://github.com/SCAI-BIO/BiomarkerOntology/issue"
+        },
         {
             "activity_status": "active",
             "build": {
@@ -1438,7 +1476,7 @@
             },
             "contact": {
                 "email": "lucas.leclere@obs-banyuls.fr",
-                "github": "L-Leclere",
+                "github": "Leclere-L",
                 "label": "Lucas Leclere",
                 "orcid": "0000-0002-7440-0467"
             },