Remove several fields

cthoyt · cthoyt · commit b5171650358e · 2026-04-17T08:57:45.000+02:00
diff --git a/ontology/cl.md b/ontology/cl.md
@@ -2,7 +2,6 @@
 layout: ontology_detail
 id: cl
 title: Cell Ontology
-canonical: cl.owl
 contact:
   email: do12@sanger.ac.uk
   github: dosumis
@@ -20,7 +19,6 @@ depicted_by: /images/CL-logo.jpg
 description: The Cell Ontology is a structured controlled vocabulary for cell types in animals.
 domain: anatomy and development
 homepage: https://obophenotype.github.io/cell-ontology/
-label: Cell Ontology
 license:
   label: CC BY 4.0
   url: http://creativecommons.org/licenses/by/4.0/
diff --git a/ontology/epio.md b/ontology/epio.md
@@ -12,7 +12,6 @@ dependencies:
 description: A application driven Epilepsy Ontology with official terms from the ILAE.
 domain: health
 homepage: https://github.com/SCAI-BIO/EpilepsyOntology
-label: Epilepsy Ontology
 license:
   label: CC BY 4.0
   url: http://creativecommons.org/licenses/by/4.0/
diff --git a/ontology/ero.md b/ontology/ero.md
@@ -6,7 +6,6 @@ contact:
   email: Marc_Ciriello@hms.harvard.edu
   label: Marc Ciriello
 description: An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.
-documentation: https://open.med.harvard.edu/wiki/display/eaglei/Ontology
 domain: information
 homepage: https://open.med.harvard.edu/wiki/display/eaglei/Ontology
 is_obsolete: true
diff --git a/ontology/go.md b/ontology/go.md
@@ -35,8 +35,6 @@ description: An ontology for describing the function of genes and gene products
 domain: biological systems
 homepage: http://geneontology.org/
 in_foundry_order: 1
-integration_server: http://build.berkeleybop.org/view/GO
-label: GO
 license:
   label: CC BY 4.0
   url: https://creativecommons.org/licenses/by/4.0/
diff --git a/ontology/kisao.md b/ontology/kisao.md
@@ -34,7 +34,6 @@ products:
 publications:
 - id: https://www.ncbi.nlm.nih.gov/pubmed/22027554
   title: Controlled vocabularies and semantics in systems biology
-releases: https://github.com/SED-ML/KiSAO/releases
 repository: https://github.com/SED-ML/KiSAO
 tags:
 - systems biology
diff --git a/ontology/labo.md b/ontology/labo.md
@@ -26,7 +26,6 @@ products:
 publications:
 - id: https://doi.org/10.5281/zenodo.6522019
   title: 'LABO: An Ontology for Laboratory Test Prescription and Reporting'
-releases: https://github.com/OpenLHS/LABO/releases/
 repository: https://github.com/OpenLHS/LABO
 tags:
 - clinical documentation
diff --git a/ontology/miapa.md b/ontology/miapa.md
@@ -20,7 +20,6 @@ products:
 publications:
 - id: https://doi.org/10.1089/omi.2006.10.231
   title: 'Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)'
-releases: https://github.com/evoinfo/miapa/releases
 repository: https://github.com/evoinfo/miapa
 tracker: https://github.com/evoinfo/miapa/issues
 activity_status: active
diff --git a/ontology/mondo.md b/ontology/mondo.md
@@ -6,7 +6,6 @@ browsers:
 - title: Monarch Initiative Disease Browser
   label: Monarch
   url: https://monarchinitiative.org/disease/MONDO:0019609
-canonical: mondo.owl
 contact:
   email: Sabrina@tislab.org
   github: sabrinatoro
@@ -16,7 +15,6 @@ depicted_by: https://raw.githubusercontent.com/monarch-initiative/mondo/master/d
 description: A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.
 domain: health
 homepage: https://monarch-initiative.github.io/mondo
-label: Mondo
 license:
   label: CC BY 4.0
   url: http://creativecommons.org/licenses/by/4.0/
diff --git a/ontology/ms.md b/ontology/ms.md
@@ -13,8 +13,6 @@ dependencies:
 description: A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.
 domain: investigations
 homepage: http://www.psidev.info/groups/controlled-vocabularies
-integration_server: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master
-label: MS
 license:
   label: CC BY 3.0
   url: https://creativecommons.org/licenses/by/3.0/
diff --git a/ontology/ncbitaxon.md b/ontology/ncbitaxon.md
@@ -42,7 +42,6 @@ usages:
   - description: A specific assay curated in the IEDB using the NCBITaxon:520 Bordetella pertussis as the source organism.
     url: http://www.iedb.org/assay/1505273
   user: https://www.iedb.org
-wasDerivedFrom: ftp://ftp.ebi.ac.uk/pub/databases/taxonomy/taxonomy.dat
 activity_status: active
 ---
 
diff --git a/ontology/nomen.md b/ontology/nomen.md
@@ -2,7 +2,6 @@
 layout: ontology_detail
 id: nomen
 title: NOMEN - A nomenclatural ontology for biological names
-canonical: nomen.owl
 contact:
   email: diapriid@gmail.com
   github: mjy
@@ -14,7 +13,6 @@ funded_by:
 - id: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1356381
   title: NSF ABI-1356381
 homepage: https://github.com/SpeciesFileGroup/nomen
-label: NOMEN
 license:
   label: CC0 1.0
   url: https://creativecommons.org/publicdomain/zero/1.0/
diff --git a/ontology/obi.md b/ontology/obi.md
@@ -16,7 +16,6 @@ description: An integrated ontology for the description of life-science and clin
 domain: investigations
 homepage: http://obi-ontology.org
 in_foundry_order: 1
-integration_server: http://build.berkeleybop.org/job/build-obi/
 license:
   label: CC BY 4.0
   url: https://creativecommons.org/licenses/by/4.0/
diff --git a/ontology/one.md b/ontology/one.md
@@ -14,7 +14,6 @@ dependencies:
 description: An ontology to standardize research output of nutritional epidemiologic studies.
 domain: diet, metabolomics, and nutrition
 homepage: https://github.com/cyang0128/Nutritional-epidemiologic-ontologies
-label: Ontology for Nutritional Epidemiology
 license:
   label: CC BY 4.0
   url: https://creativecommons.org/licenses/by/4.0/
diff --git a/ontology/ons.md b/ontology/ons.md
@@ -19,7 +19,6 @@ dependencies:
 description: An ontology for description of concepts in the nutritional studies domain.
 domain: diet, metabolomics, and nutrition
 homepage: https://github.com/enpadasi/Ontology-for-Nutritional-Studies
-label: Ontology for Nutritional Studies
 license:
   label: CC BY 4.0
   url: https://creativecommons.org/licenses/by/4.0/
diff --git a/ontology/pr.md b/ontology/pr.md
@@ -16,7 +16,6 @@ contact:
   orcid: 0000-0001-5809-9523
 depicted_by: https://raw.githubusercontent.com/PROconsortium/logo/master/PROlogo_small.png
 description: An ontological representation of protein-related entities
-documentation: https://proconsortium.org/download/current/pro_readme.txt
 domain: chemistry and biochemistry
 homepage: http://proconsortium.org
 in_foundry_order: 1
diff --git a/ontology/ro.md b/ontology/ro.md
@@ -2,14 +2,12 @@
 layout: ontology_detail
 id: ro
 title: Relation Ontology
-canonical: ro.owl
 contact:
   email: cjmungall@lbl.gov
   github: cmungall
   label: Chris Mungall
   orcid: 0000-0002-6601-2165
 description: Relationship types shared across multiple ontologies
-documentation: https://oborel.github.io/obo-relations/
 domain: upper
 homepage: https://oborel.github.io/
 license:
diff --git a/ontology/uberon.md b/ontology/uberon.md
@@ -18,7 +18,6 @@ browsers:
 - title: INCF KnowledgeSpace Portal
   label: KnowledgeSpace
   url: https://knowledge-space.org/index.php/pages/view/UBERON:0000061
-canonical: uberon.owl
 contact:
   email: cjmungall@lbl.gov
   github: cmungall
@@ -50,7 +49,6 @@ funded_by:
 - id: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0956049
   title: NSF DEB-0956049
 homepage: http://uberon.org
-label: Uberon
 license:
   label: CC BY 3.0
   url: http://creativecommons.org/licenses/by/3.0/
@@ -103,7 +101,6 @@ publications:
   title: Uberon, an integrative multi-species anatomy ontology
 - id: https://www.ncbi.nlm.nih.gov/pubmed/25009735
   title: Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
-releases: http://purl.obolibrary.org/obo/uberon/releases/
 repository: https://github.com/obophenotype/uberon
 slack: https://obo-communitygroup.slack.com/archives/C01CR698CF2
 taxon:
@@ -161,7 +158,6 @@ usages:
     title: 'ChEMBL: towards direct deposition of bioassay data'
   type: Database
   user: https://www.ebi.ac.uk/chembl/
-wikidata_template: https://en.wikipedia.org/wiki/Template:Uberon
 activity_status: active
 ---
 
diff --git a/ontology/xlmod.md b/ontology/xlmod.md
@@ -10,7 +10,6 @@ contact:
 description: A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.
 domain: chemistry and biochemistry
 homepage: http://www.psidev.info/groups/controlled-vocabularies
-label: xlmod
 license:
   label: CC BY 3.0
   url: https://creativecommons.org/licenses/by/3.0/
diff --git a/util/schema/registry_schema.json b/util/schema/registry_schema.json
@@ -46,9 +46,6 @@
         ]
       }
     },
-    "canonical": {
-      "suggest": false
-    },
     "contact": {
       "level": "error",
       "principle": "http://obofoundry.org/principles/fp-011-locus-of-authority.html",
@@ -91,9 +88,6 @@
     "depicted_by": {
       "suggest": false
     },
-    "documentation": {
-      "suggest": false
-    },
     "domain": {
       "level": "error",
       "description": "'domain' is a mandatory field. The value is the scientific topic area addressed by the ontology.",
@@ -167,19 +161,13 @@
     "in_foundry_order": {
       "suggest": false
     },
-    "integration_server": {
-      "suggest": false
-    },
     "is_obsolete": {
       "suggest": false,
       "level": "info",
       "description": "'is_obsolete' is an informative field. It is set to true when the ontology is obsolete.",
       "type": "boolean",
       "default": false
     },
-    "label": {
-      "suggest": false
-    },
     "layout": {
       "level": "error",
       "description": "'layout' is a required field. It manages the display of the ontology record on the OBO Foundry website. The value should be 'ontology_detail'. ",
@@ -381,9 +369,6 @@
       "type": "integer",
       "description": "This encodes the number of the pull request on the OBO Foundry GitHub repository that was originally used to add this ontology. You can curate additional ones by going to the ontology page (e.g., https://github.com/OBOFoundry/OBOFoundry.github.io/commits/master/ontology/clyh.md) and looking the whole way down the list for the first commit. Click on the title for the commit then you will see if there's a PR associated with it."
     },
-    "releases": {
-      "suggest": false
-    },
     "replaced_by": {
       "suggest": false
     },
@@ -498,12 +483,6 @@
           "description"
         ]
       }
-    },
-    "wasDerivedFrom": {
-      "suggest": false
-    },
-    "wikidata_template": {
-      "suggest": false
     }
   },
   "required": [
