@@ -3,25 +3,46 @@ layout: ontology_detail
33id : fbbi
44title : Biological Imaging Methods Ontology
55build :
6- method : obo2owl
7- source_url : https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo
6+ checkout : git clone https://github.com/foundingGIDE/fbbi.git
7+ path : .
8+ system : git
89contact :
9- email : wawong@gmail.com
10- github : wawong
11- label : Willy Wong
12- orcid : 0000-0002-8841-5870
13- description : A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.
10+ email : damien@gerbi-gmb.de
11+ github : gouttegd
12+ label : Damien Goutte-Gattat
13+ orcid : 0000-0002-6095-8718
14+ dependencies :
15+ - id : iao
16+ - id : omo
17+ - id : ro
18+ description : An ontology for the description of sample preparation, visualization, and imaging methods used in biomedical research.
1419domain : investigations
15- homepage : http ://cellimagelibrary.org/
20+ homepage : https ://github.com/foundingGIDE/fbbi
1621license :
1722 label : CC BY 4.0
1823 url : https://creativecommons.org/licenses/by/4.0/
1924preferredPrefix : FBbi
2025products :
2126- id : fbbi.owl
22- repository : https://github.com/CRBS/Biological_Imaging_Methods_Ontology
27+ - id : fbbi.obo
28+ - id : fbbi/fbbi-base.owl
29+ - id : fbbi/fbbi-base.obo
30+ repository : https://github.com/foundingGIDE/fbbi
2331tags :
2432- imaging experiments
25- tracker : https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues
26- activity_status : inactive
33+ tracker : https://github.com/foundingGIDE/fbbi/issues
34+ usages :
35+ - description : FlyBase uses FBbi to annotate its image collection.
36+ examples :
37+ - description : images annotated to "scanning electron micrograph"
38+ url : https://flybase.org/cgi-bin/fbcvquery.pl?mode=subtreehits&cvterm=FBbi:00000257%3EFBim
39+ user : https://flybase.org
40+ - description : Virtual Fly Brain uses FBbi to annotate images.
41+ user : https://virtualflybrain.org
42+ - description : The Cell Image Library uses FBbi to annotate images.
43+ examples :
44+ - description : An image annotate with several terms from FBbi.
45+ url : https://www.cellimagelibrary.org/images/13654
46+ user : https://www.cellimagelibrary.org
47+ activity_status : active
2748---
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