Update oae.md

Added OAE publication records and usages.

Author: yongqunh

ontology/oae.md

@@ -11,16 +11,51 @@ description: A biomedical ontology in the domain of adverse events
 domain: health
 homepage: https://github.com/OAE-ontology/OAE/
 license:
-  label: CC BY 3.0
-  url: http://creativecommons.org/licenses/by/3.0/
+  label: CC BY 4.0
+  url: http://creativecommons.org/licenses/by/4.0/
 preferredPrefix: OAE
 products:
-- id: oae.owl
+- id: oae.owl 
 repository: https://github.com/OAE-ontology/OAE
 tags:
 - adverse events
 tracker: https://github.com/OAE-ontology/OAE/issues
 activity_status: active
+
+publications:
+- id: https://pubmed.ncbi.nlm.nih.gov/25093068/
+  title: OAE - The Ontology of Adverse Events
+- id: https://pubmed.ncbi.nlm.nih.gov/41526409/
+  title: The Ontology of Adverse Events in 2025
+
+usages:
+- description: Using OAE to support the classification and analysis of VAERS vaccine adverse event reporting system data analysis. 
+  examples:
+  - description: OAE was used to analyze and differentiate adverse events associated with inactivated and live attenuated influenza vaccines reported in VAERS   
+    url: https://pubmed.ncbi.nlm.nih.gov/23209624/    
+  - description: OAE was used to analyze COVID-19 vaccine adverse events reported in VAERS   
+    urls:
+    - https://pubmed.ncbi.nlm.nih.gov/35814246/
+    - https://pubmed.ncbi.nlm.nih.gov/41971073/
+  - description: OAE was used to analyze adverse events associated with monovalent and combination vaccines against Hepatitis A and B diseases reported in VAERS   
+    url: https://pubmed.ncbi.nlm.nih.gov/27694888/
+    
+- description: Using OAE to analyze vaccine adverse event using FDA vaccine package insert documents  
+  examples:
+  - description: OAE was used to unveil differential vaccine adverse events via LLM text embeddings of FDA vaccine package insert documents
+    url: https://pubmed.ncbi.nlm.nih.gov/40410898/
+    
+- description: Using OAE to analyze vaccine adverse events reported in PubMed papers   
+  examples:
+  - description: OAE was used to classify human and animal adverse events associated with different Brucella animal vaccines as reported in PubMed literature 
+    url: https://pubmed.ncbi.nlm.nih.gov/40410898/
+    
+- description: VIOLIN vaccine resource uses OAE to represent vaccine adverse event information. 
+  examples:
+  - description: The VIOLIN vaccine safety database (Vaxafe) uses OAE to map adverse event information in vaccine adverse event case reports, for example, Vaxafe uses OAE to represent many adverse events (such as Convulsion, Cough) reported in a VAERS case ID - 204308.  
+    url: https://violinet.org/vaxafe/case.php?vaers_id=204308 
+  user: https://violinet.org/
+  
 ---
 
 The Ontology of Adverse Events (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning.  OAE is a community-based ontology. Its development follows the OBO Foundry principles.