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1 | 1 | --- |
| 2 | +layout: ontology_detail |
2 | 3 | id: bmont |
3 | | - mirror_from: https://raw.githubusercontent.com/SCAI-BIO/BiomarkerOntology/main/BMONT-merged.owl |
4 | | - title: "Biomarker Ontology" |
5 | | - contact: |
6 | | - email: alpha.tom.kodamullil@scai.fraunhofer.de |
7 | | - label: Alpha Tom Kodamullil |
8 | | - orcid: 0000-0001-9896-3531 |
9 | | - github: akodamullil |
10 | | - description: The Biomarker Ontolody comprises a comprehensive knowledge involving a variety of fields of medical and biological aspects. |
11 | | - domain: health |
12 | | - homepage: https://github.com/SCAI-BIO/BiomarkerOntology |
13 | | - products: |
14 | | - - id: BMONT-merged.owl |
15 | | - tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issues |
16 | | - license: |
17 | | - url: https://creativecommons.org/licenses/by/4.0/ |
18 | | - label: CC BY 4.0 |
| 4 | +title: Biomarker Ontology |
| 5 | +browsers: |
| 6 | +- title: BioPortal Ontology Browser |
| 7 | + label: BioPortal |
| 8 | + url: [https://bioportal.bioontology.org/ontologies/BMONT] |
| 9 | +contact: |
| 10 | + email: alpha.tom.kodamullil@scai.fraunhofer.de |
| 11 | + github: akodamullil |
| 12 | + label: Alpha Tom Kodamullil |
| 13 | + orcid: 0000-0001-9896-3531 |
| 14 | +description: An ontology of phenotypic qualities (properties, attributes or characteristics) |
| 15 | +domain: health |
| 16 | +homepage: https://github.com/SCAI-BIO/BiomarkerOntology |
| 17 | +in_foundry_order: |
| 18 | +license: |
| 19 | + label: CC BY 4.0 |
| 20 | + url: http://creativecommons.org/licenses/by/4.0/ |
| 21 | +preferredPrefix: BMONT |
| 22 | +products: |
| 23 | +- id: BMONT.owl |
| 24 | +- id: bmont.obo |
| 25 | + description: Includes axioms linking to other ontologies, but no imports of those ontologies |
| 26 | +publications: |
| 27 | +- id: |
| 28 | + title: |
| 29 | +- id: |
| 30 | + title: Using ontologies to describe mouse phenotypes |
| 31 | +repository: https://github.com/pato-ontology/pato |
| 32 | +tracker: https://github.com/pato-ontology/pato/issues |
| 33 | +usages: |
| 34 | +- description: PATO is used by the Human Phenotype Ontology (HPO) for logical definitions of phenotypes that facilitate cross-species integration. |
| 35 | + examples: |
| 36 | + - description: An abnormality in a cellular process. |
| 37 | + url: https://www.ebi.ac.uk/ols/ontologies/hp/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHP_0011017&viewMode=All&siblings=false |
| 38 | + publications: |
| 39 | + - id: https://www.ncbi.nlm.nih.gov/pubmed/30476213 |
| 40 | + title: Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources |
| 41 | + type: annotation |
| 42 | + user: https://hpo.jax.org/app/ |
| 43 | +activity_status: active |
| 44 | +--- |
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