From 7add280d409f244cfca85f15309006548889a8ed Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Wed, 8 Oct 2025 15:02:25 -0400 Subject: [PATCH 1/2] Update symp.md URLs --- ontology/symp.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/ontology/symp.md b/ontology/symp.md index 3b433aca5..b91f3fada 100644 --- a/ontology/symp.md +++ b/ontology/symp.md @@ -5,7 +5,7 @@ title: Symptom Ontology build: infallible: 1 method: obo2owl - source_url: https://raw.githubusercontent.com/DiseaseOntology/SymptomOntology/master/symp.obo + source_url: https://raw.githubusercontent.com/DiseaseOntology/SymptomOntology/master/src/ontology/symp.obo contact: email: lynn.schriml@gmail.com github: lschriml @@ -13,7 +13,7 @@ contact: orcid: 0000-0001-8910-9851 description: An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease. domain: health -homepage: http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page +homepage: https://github.com/DiseaseOntology/SymptomOntology license: label: CC0 1.0 url: https://creativecommons.org/publicdomain/zero/1.0/ @@ -22,9 +22,9 @@ products: - id: symp.owl - id: symp.obo publications: -- id: https://www.ncbi.nlm.nih.gov/pubmed/19850722 +- id: https://pubmed.ncbi.nlm.nih.gov/19850722/ title: GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database -- id: https://www.ncbi.nlm.nih.gov/pubmed/34755882 +- id: https://pubmed.ncbi.nlm.nih.gov/34755882/ title: The Human Disease Ontology 2022 update repository: https://github.com/DiseaseOntology/SymptomOntology tags: @@ -37,8 +37,8 @@ usages: - description: Symptoms of human diseases in the DO examples: - description: symptoms of human diseases - url: http://www.disease-ontology.org/?id=DOID:0060164 - user: http://www.disease-ontology.org + url: https://disease-ontology.org/?id=DOID:0060164 + user: https://disease-ontology.org/ activity_status: active --- From 77c596eb6655bef95959df654510195f8c320c24 Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Wed, 8 Oct 2025 15:34:44 -0400 Subject: [PATCH 2/2] Restore PubMed URLs --- ontology/symp.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/ontology/symp.md b/ontology/symp.md index b91f3fada..0f05998c7 100644 --- a/ontology/symp.md +++ b/ontology/symp.md @@ -22,9 +22,9 @@ products: - id: symp.owl - id: symp.obo publications: -- id: https://pubmed.ncbi.nlm.nih.gov/19850722/ +- id: https://www.ncbi.nlm.nih.gov/pubmed/19850722 title: GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database -- id: https://pubmed.ncbi.nlm.nih.gov/34755882/ +- id: https://www.ncbi.nlm.nih.gov/pubmed/34755882 title: The Human Disease Ontology 2022 update repository: https://github.com/DiseaseOntology/SymptomOntology tags: