From bf727d0a121dfd356df2390158381df442002b93 Mon Sep 17 00:00:00 2001 From: Sabrina Toro Date: Sun, 16 Nov 2025 20:56:27 -0500 Subject: [PATCH 1/3] Update vbo.md with mailing list and publications Added mailing list and publications sections to the ontology file. --- ontology/vbo.md | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/ontology/vbo.md b/ontology/vbo.md index 2aee9a37d..5244e90c8 100644 --- a/ontology/vbo.md +++ b/ontology/vbo.md @@ -15,6 +15,7 @@ homepage: https://github.com/monarch-initiative/vertebrate-breed-ontology license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ +mailing_list: https://groups.google.com/group/VBO-users preferredPrefix: VBO products: - id: vbo.owl @@ -29,6 +30,9 @@ products: name: Vertebrate Breed Ontology additional release in OBO format - id: vbo/vbo-base.json name: Vertebrate Breed Ontology additional release in OBOJSon format +publications: +- id: https://doi.org/10.1111/jvim.70133 + title: 'The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization' repository: https://github.com/monarch-initiative/vertebrate-breed-ontology tracker: https://github.com/monarch-initiative/vertebrate-breed-ontology/issues usages: @@ -38,5 +42,12 @@ usages: url: https://www.omia.org/OMIA001289/9685/ type: annotation user: https://omia.org/home/ +- description: VBO is used in Cellosaurus for breed/subspecies of origin of cell lines. + examples: + - description: The cell line AG07906 derived from the Thoroughbred (VBO:0001083) breed of Equuus caballus (Horse). + url: https://www.cellosaurus.org/CVCL_2L83 + type: annotation + user: https://www.cellosaurus.org/index.html + activity_status: active --- From cb48bae88b4cdd54b249fff412a94e6592c5012d Mon Sep 17 00:00:00 2001 From: Sabrina Toro Date: Sun, 16 Nov 2025 21:17:20 -0500 Subject: [PATCH 2/3] Update vbo.md --- ontology/vbo.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ontology/vbo.md b/ontology/vbo.md index 5244e90c8..4dce15965 100644 --- a/ontology/vbo.md +++ b/ontology/vbo.md @@ -7,6 +7,7 @@ contact: github: sabrinatoro label: Sabrina Toro orcid: 0000-0002-4142-7153 +depicted_by: https://github.com/tis-lab/closed-illustrations/blob/15058315cba1018e09572b28ebeee262a458b1c6/logos/vbo-logo/VBO-black-logo-stackedv2.png dependencies: - id: ncbitaxon description: Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names. @@ -48,6 +49,5 @@ usages: url: https://www.cellosaurus.org/CVCL_2L83 type: annotation user: https://www.cellosaurus.org/index.html - activity_status: active --- From 936b29d6a7212ba5edae0f439eb72dbaa9f60b95 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Mon, 17 Nov 2025 17:27:22 +0200 Subject: [PATCH 3/3] Move 'depicted_by' field below dependencies in vbo.md Reordered the 'depicted_by' field in ontology/vbo.md to appear after the dependencies list for improved organization and clarity. --- ontology/vbo.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ontology/vbo.md b/ontology/vbo.md index 4dce15965..7c9bcf722 100644 --- a/ontology/vbo.md +++ b/ontology/vbo.md @@ -7,9 +7,9 @@ contact: github: sabrinatoro label: Sabrina Toro orcid: 0000-0002-4142-7153 -depicted_by: https://github.com/tis-lab/closed-illustrations/blob/15058315cba1018e09572b28ebeee262a458b1c6/logos/vbo-logo/VBO-black-logo-stackedv2.png dependencies: - id: ncbitaxon +depicted_by: https://github.com/tis-lab/closed-illustrations/blob/15058315cba1018e09572b28ebeee262a458b1c6/logos/vbo-logo/VBO-black-logo-stackedv2.png description: Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names. domain: organisms homepage: https://github.com/monarch-initiative/vertebrate-breed-ontology