diff --git a/ontology/fbbi.md b/ontology/fbbi.md index 7b73bb15c..f596cb8f7 100644 --- a/ontology/fbbi.md +++ b/ontology/fbbi.md @@ -3,25 +3,46 @@ layout: ontology_detail id: fbbi title: Biological Imaging Methods Ontology build: - method: obo2owl - source_url: https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo + checkout: git clone https://github.com/foundingGIDE/fbbi.git + path: . + system: git contact: - email: wawong@gmail.com - github: wawong - label: Willy Wong - orcid: 0000-0002-8841-5870 -description: A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. + email: damien@gerbi-gmb.de + github: gouttegd + label: Damien Goutte-Gattat + orcid: 0000-0002-6095-8718 +dependencies: +- id: iao +- id: omo +- id: ro +description: An ontology for the description of sample preparation, visualization, and imaging methods used in biomedical research. domain: investigations -homepage: http://cellimagelibrary.org/ +homepage: https://github.com/foundingGIDE/fbbi license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ preferredPrefix: FBbi products: - id: fbbi.owl -repository: https://github.com/CRBS/Biological_Imaging_Methods_Ontology +- id: fbbi.obo +- id: fbbi/fbbi-base.owl +- id: fbbi/fbbi-base.obo +repository: https://github.com/foundingGIDE/fbbi tags: - imaging experiments -tracker: https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues -activity_status: inactive +tracker: https://github.com/foundingGIDE/fbbi/issues +usages: +- description: FlyBase uses FBbi to annotate its image collection. + examples: + - description: images annotated to "scanning electron micrograph" + url: https://flybase.org/cgi-bin/fbcvquery.pl?mode=subtreehits&cvterm=FBbi:00000257%3EFBim + user: https://flybase.org +- description: Virtual Fly Brain uses FBbi to annotate images. + user: https://virtualflybrain.org +- description: The Cell Image Library uses FBbi to annotate images. + examples: + - description: An image annotate with several terms from FBbi. + url: https://www.cellimagelibrary.org/images/13654 + user: https://www.cellimagelibrary.org +activity_status: active ---