diff --git a/.gitignore b/.gitignore index b11b1d5dc..9dc6f510e 100644 --- a/.gitignore +++ b/.gitignore @@ -31,3 +31,5 @@ share/python-wheels/ *.egg MANIFEST node_modules/ +apache-jena-*.tar.gz +apache-jena-*/ diff --git a/_config.yml b/_config.yml index 81c435cc6..136a255a6 100644 --- a/_config.yml +++ b/_config.yml @@ -317,7 +317,6 @@ ontologies: domain: organisms homepage: https://github.com/BiodiversityOntologies/bco id: bco - in_foundry: false layout: ontology_detail license: label: CC0 1.0 @@ -352,7 +351,6 @@ ontologies: domain: upper homepage: http://ifomis.org/bfo/ id: bfo - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -548,7 +546,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://www.ebi.ac.uk/chebi id: chebi - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -1429,7 +1426,6 @@ ontologies: domain: health homepage: https://disease-ontology.org id: doid - in_foundry_order: 1 layout: ontology_detail license: label: CC0 1.0 @@ -2781,7 +2777,6 @@ ontologies: domain: biological systems homepage: http://geneontology.org/ id: go - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -4460,7 +4455,6 @@ ontologies: domain: information technology homepage: https://github.com/obcs/obcs id: obcs - in_foundry: false layout: ontology_detail license: label: CC BY 4.0 @@ -4500,7 +4494,6 @@ ontologies: domain: investigations homepage: http://obi-ontology.org id: obi - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -4806,7 +4799,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://omit.cis.usouthal.edu/ id: omit - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -5291,7 +5283,6 @@ ontologies: domain: phenotype homepage: https://github.com/pato-ontology/pato/ id: pato - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -5344,7 +5335,6 @@ ontologies: domain: chemistry and biochemistry homepage: https://github.com/InSilicoVida-Research-Lab/pbpko id: pbpko - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -5645,7 +5635,6 @@ ontologies: domain: anatomy and development homepage: http://browser.planteome.org/amigo id: po - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -5778,7 +5767,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://proconsortium.org id: pr - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -6308,7 +6296,6 @@ ontologies: domain: information technology homepage: http://stato-ontology.org/ id: stato - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -6883,7 +6870,6 @@ ontologies: domain: phenotype homepage: https://github.com/bio-ontology-research-group/unit-ontology id: uo - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -7325,7 +7311,6 @@ ontologies: domain: anatomy and development homepage: http://www.xenbase.org/anatomy/xao.do?method=display id: xao - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -7510,7 +7495,6 @@ ontologies: domain: anatomy and development homepage: https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources id: zfa - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -7550,7 +7534,6 @@ ontologies: domain: anatomy and development homepage: https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources id: zfs - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -7988,7 +7971,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://www.ebi.ac.uk/chebi id: fix - in_foundry: false layout: ontology_detail ontology_purl: http://purl.obolibrary.org/obo/fix.owl products: @@ -8604,7 +8586,6 @@ ontologies: domain: anatomy and development homepage: https://github.com/obi-bcgo/bcgo id: bcgo - in_foundry: false is_obsolete: true layout: ontology_detail license: @@ -8819,7 +8800,6 @@ ontologies: domain: health homepage: https://code.google.com/p/epidemiology-ontology/ id: epo - in_foundry: false is_obsolete: true layout: ontology_detail products: @@ -8885,7 +8865,6 @@ ontologies: domain: health homepage: http://purl.obolibrary.org/obo/flu/ id: flu - in_foundry: false is_obsolete: true layout: ontology_detail products: @@ -8949,7 +8928,6 @@ ontologies: description: An ontology representation of the LIPIDMAPS nomenclature classification. domain: chemistry and biochemistry id: lipro - in_foundry: false is_obsolete: true layout: ontology_detail tags: diff --git a/_includes/ontology_table.html b/_includes/ontology_table.html index c6c778de4..a5c8aa3da 100644 --- a/_includes/ontology_table.html +++ b/_includes/ontology_table.html @@ -5,21 +5,8 @@ RDF/Turtle ] - {% for ont in site.ontologies %} {% if ont.in_foundry_order %} + {% for ont in site.ontologies %} - {% elsif ont.is_obsolete %} - - - - {% elsif ont.activity_status == "orphaned" %} - - - - {% elsif ont.activity_status == "inactive" %} - - - - {% endif %}
{% if ont.is_obsolete %} diff --git a/faq/where-is-the-obo-file.md b/faq/where-is-the-obo-file.md index c3d837dce..d79dee5b5 100644 --- a/faq/where-is-the-obo-file.md +++ b/faq/where-is-the-obo-file.md @@ -23,7 +23,6 @@ The different products are listed as objects under the `product` key, for exampl --- layout: ontology_detail id: go -in_foundry_order: 1 label: GO description: An ontology for describing the function of genes and gene products title: Gene Ontology diff --git a/ontology/bcgo.md b/ontology/bcgo.md index 21a9dc307..837d760f2 100644 --- a/ontology/bcgo.md +++ b/ontology/bcgo.md @@ -10,7 +10,6 @@ contact: description: An application ontology built for beta cell genomics studies. domain: anatomy and development homepage: https://github.com/obi-bcgo/bcgo -in_foundry: false is_obsolete: true license: label: CC BY 3.0 diff --git a/ontology/bco.md b/ontology/bco.md index d16c5d62f..cc6479d30 100644 --- a/ontology/bco.md +++ b/ontology/bco.md @@ -10,7 +10,6 @@ contact: description: An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys. domain: organisms homepage: https://github.com/BiodiversityOntologies/bco -in_foundry: false license: label: CC0 1.0 url: https://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/bfo.md b/ontology/bfo.md index c7b91decc..b2a1ccdb8 100644 --- a/ontology/bfo.md +++ b/ontology/bfo.md @@ -15,7 +15,6 @@ depicted_by: https://avatars2.githubusercontent.com/u/12972134?v=3&s=200 description: The upper level ontology upon which OBO Foundry ontologies are built. domain: upper homepage: http://ifomis.org/bfo/ -in_foundry_order: 1 license: label: CC BY 4.0 url: http://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/chebi.md b/ontology/chebi.md index 7c1e601d1..6ef445faf 100644 --- a/ontology/chebi.md +++ b/ontology/chebi.md @@ -15,7 +15,6 @@ depicted_by: https://www.ebi.ac.uk/chebi/chebi_logo.svg description: A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds. domain: chemistry and biochemistry homepage: http://www.ebi.ac.uk/chebi -in_foundry_order: 1 license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/doid.md b/ontology/doid.md index 97a51031f..ecc863c58 100644 --- a/ontology/doid.md +++ b/ontology/doid.md @@ -15,7 +15,6 @@ depicted_by: https://disease-ontology.org/media/images/DO_logo_teal.png description: An ontology for describing the classification of human diseases organized by etiology. domain: health homepage: https://disease-ontology.org -in_foundry_order: 1 license: label: CC0 1.0 url: https://creativecommons.org/publicdomain/zero/1.0/ diff --git a/ontology/epo.md b/ontology/epo.md index 2eae81c4d..42cff1d8b 100644 --- a/ontology/epo.md +++ b/ontology/epo.md @@ -5,7 +5,6 @@ title: Epidemiology Ontology description: An ontology designed to support the semantic annotation of epidemiology resources domain: health homepage: https://code.google.com/p/epidemiology-ontology/ -in_foundry: false is_obsolete: true products: - id: epo.owl diff --git a/ontology/fix.md b/ontology/fix.md index a646fc6cb..b1248dcfa 100644 --- a/ontology/fix.md +++ b/ontology/fix.md @@ -8,7 +8,6 @@ contact: description: An ontology of physico-chemical methods and properties. domain: chemistry and biochemistry homepage: http://www.ebi.ac.uk/chebi -in_foundry: false products: - id: fix.owl - id: fix.obo diff --git a/ontology/flu.md b/ontology/flu.md index 8137948a9..34f1d0232 100644 --- a/ontology/flu.md +++ b/ontology/flu.md @@ -7,7 +7,6 @@ contact: label: Burke Squires domain: health homepage: http://purl.obolibrary.org/obo/flu/ -in_foundry: false is_obsolete: true products: - id: flu.owl diff --git a/ontology/go.md b/ontology/go.md index b86b756d0..1b54a3933 100644 --- a/ontology/go.md +++ b/ontology/go.md @@ -34,7 +34,6 @@ depicted_by: /images/go_logo.png description: An ontology for describing the function of genes and gene products domain: biological systems homepage: http://geneontology.org/ -in_foundry_order: 1 license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/lipro.md b/ontology/lipro.md index ec827858e..637f89097 100644 --- a/ontology/lipro.md +++ b/ontology/lipro.md @@ -8,7 +8,6 @@ contact: orcid: 0000-0003-4004-6479 description: An ontology representation of the LIPIDMAPS nomenclature classification. domain: chemistry and biochemistry -in_foundry: false is_obsolete: true tags: - lipids diff --git a/ontology/obcs.md b/ontology/obcs.md index d92a8ac7a..a207282c8 100644 --- a/ontology/obcs.md +++ b/ontology/obcs.md @@ -10,7 +10,6 @@ contact: description: A biomedical ontology in the domain of biological and clinical statistics. domain: information technology homepage: https://github.com/obcs/obcs -in_foundry: false license: label: CC BY 4.0 url: http://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/obi.md b/ontology/obi.md index 05596336b..b53e59604 100644 --- a/ontology/obi.md +++ b/ontology/obi.md @@ -15,7 +15,6 @@ depicted_by: https://svn.code.sf.net/p/obi/code/trunk/web/htdocs/images/obi-lote description: An integrated ontology for the description of life-science and clinical investigations domain: investigations homepage: http://obi-ontology.org -in_foundry_order: 1 license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/omit.md b/ontology/omit.md index 9508cd99c..2111e0d9e 100644 --- a/ontology/omit.md +++ b/ontology/omit.md @@ -10,7 +10,6 @@ contact: description: Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain domain: chemistry and biochemistry homepage: http://omit.cis.usouthal.edu/ -in_foundry: false license: label: CC BY 3.0 url: https://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/pato.md b/ontology/pato.md index f4e9ed12b..858b1fec3 100644 --- a/ontology/pato.md +++ b/ontology/pato.md @@ -14,7 +14,6 @@ contact: description: An ontology of phenotypic qualities (properties, attributes or characteristics) domain: phenotype homepage: https://github.com/pato-ontology/pato/ -in_foundry_order: 1 license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/pbpko.md b/ontology/pbpko.md index 9ce3fac53..f04fd0a49 100644 --- a/ontology/pbpko.md +++ b/ontology/pbpko.md @@ -14,7 +14,6 @@ contact: description: An ontology for modeling and understanding of pharmacokinetics in biological systems. domain: chemistry and biochemistry homepage: https://github.com/InSilicoVida-Research-Lab/pbpko -in_foundry_order: 1 license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/po.md b/ontology/po.md index 7013d77c4..c6cae7348 100644 --- a/ontology/po.md +++ b/ontology/po.md @@ -15,7 +15,6 @@ depicted_by: https://raw.githubusercontent.com/Planteome/plant-ontology/refs/hea description: The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. domain: anatomy and development homepage: http://browser.planteome.org/amigo -in_foundry_order: 1 license: label: CC BY 4.0 url: https://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/pr.md b/ontology/pr.md index ed2084625..74c2cb6cf 100644 --- a/ontology/pr.md +++ b/ontology/pr.md @@ -18,7 +18,6 @@ depicted_by: https://raw.githubusercontent.com/PROconsortium/logo/master/PROlogo description: An ontological representation of protein-related entities domain: chemistry and biochemistry homepage: http://proconsortium.org -in_foundry_order: 1 license: label: CC BY 4.0 url: http://creativecommons.org/licenses/by/4.0/ diff --git a/ontology/stato.md b/ontology/stato.md index c38a5bd6d..7b40205a2 100644 --- a/ontology/stato.md +++ b/ontology/stato.md @@ -11,7 +11,6 @@ depicted_by: https://raw.githubusercontent.com/ISA-tools/stato/dev/images/stato- description: STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results. domain: information technology homepage: http://stato-ontology.org/ -in_foundry: false license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/uo.md b/ontology/uo.md index 66dfbc1fd..23fd91980 100644 --- a/ontology/uo.md +++ b/ontology/uo.md @@ -10,7 +10,6 @@ contact: description: Metrical units for use in conjunction with PATO domain: phenotype homepage: https://github.com/bio-ontology-research-group/unit-ontology -in_foundry: false license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/xao.md b/ontology/xao.md index 3abf67bde..b5a911765 100644 --- a/ontology/xao.md +++ b/ontology/xao.md @@ -10,7 +10,6 @@ contact: description: XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis. domain: anatomy and development homepage: http://www.xenbase.org/anatomy/xao.do?method=display -in_foundry_order: 1 license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/zfa.md b/ontology/zfa.md index 088843b56..0ecf7dd34 100644 --- a/ontology/zfa.md +++ b/ontology/zfa.md @@ -10,7 +10,6 @@ contact: description: A structured controlled vocabulary of the anatomy and development of the Zebrafish domain: anatomy and development homepage: https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources -in_foundry_order: 1 license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/ontology/zfs.md b/ontology/zfs.md index def13ff81..d5401bf3d 100644 --- a/ontology/zfs.md +++ b/ontology/zfs.md @@ -10,7 +10,6 @@ contact: description: Developmental stages of the Zebrafish domain: anatomy and development homepage: https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources -in_foundry: false license: label: CC BY 3.0 url: http://creativecommons.org/licenses/by/3.0/ diff --git a/registry/ontologies.jsonld b/registry/ontologies.jsonld index 42d77ac3f..3c209f403 100644 --- a/registry/ontologies.jsonld +++ b/registry/ontologies.jsonld @@ -420,7 +420,6 @@ "domain": "organisms", "homepage": "https://github.com/BiodiversityOntologies/bco", "id": "bco", - "in_foundry": false, "layout": "ontology_detail", "license": { "label": "CC0 1.0", @@ -468,7 +467,6 @@ "domain": "upper", "homepage": "http://ifomis.org/bfo/", "id": "bfo", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 4.0", @@ -737,7 +735,6 @@ "domain": "chemistry and biochemistry", "homepage": "http://www.ebi.ac.uk/chebi", "id": "chebi", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 4.0", @@ -1957,7 +1954,6 @@ "domain": "health", "homepage": "https://disease-ontology.org", "id": "doid", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC0 1.0", @@ -3957,7 +3953,6 @@ "domain": "biological systems", "homepage": "http://geneontology.org/", "id": "go", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 4.0", @@ -6273,7 +6268,6 @@ "domain": "information technology", "homepage": "https://github.com/obcs/obcs", "id": "obcs", - "in_foundry": false, "layout": "ontology_detail", "license": { "label": "CC BY 4.0", @@ -6327,7 +6321,6 @@ "domain": "investigations", "homepage": "http://obi-ontology.org", "id": "obi", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 4.0", @@ -6714,7 +6707,6 @@ "domain": "chemistry and biochemistry", "homepage": "http://omit.cis.usouthal.edu/", "id": "omit", - "in_foundry": false, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -7374,7 +7366,6 @@ "domain": "phenotype", "homepage": "https://github.com/pato-ontology/pato/", "id": "pato", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -7454,7 +7445,6 @@ "domain": "chemistry and biochemistry", "homepage": "https://github.com/InSilicoVida-Research-Lab/pbpko", "id": "pbpko", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -7915,7 +7905,6 @@ "domain": "anatomy and development", "homepage": "http://browser.planteome.org/amigo", "id": "po", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 4.0", @@ -8111,7 +8100,6 @@ "domain": "chemistry and biochemistry", "homepage": "http://proconsortium.org", "id": "pr", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 4.0", @@ -8852,7 +8840,6 @@ "domain": "information technology", "homepage": "http://stato-ontology.org/", "id": "stato", - "in_foundry": false, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -9662,7 +9649,6 @@ "domain": "phenotype", "homepage": "https://github.com/bio-ontology-research-group/unit-ontology", "id": "uo", - "in_foundry": false, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -10288,7 +10274,6 @@ "domain": "anatomy and development", "homepage": "http://www.xenbase.org/anatomy/xao.do?method=display", "id": "xao", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -10556,7 +10541,6 @@ "domain": "anatomy and development", "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources", "id": "zfa", - "in_foundry_order": 1, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -10613,7 +10597,6 @@ "domain": "anatomy and development", "homepage": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources", "id": "zfs", - "in_foundry": false, "layout": "ontology_detail", "license": { "label": "CC BY 3.0", @@ -11265,7 +11248,6 @@ "domain": "chemistry and biochemistry", "homepage": "http://www.ebi.ac.uk/chebi", "id": "fix", - "in_foundry": false, "layout": "ontology_detail", "ontology_purl": "http://purl.obolibrary.org/obo/fix.owl", "products": [ @@ -12101,7 +12083,6 @@ "domain": "anatomy and development", "homepage": "https://github.com/obi-bcgo/bcgo", "id": "bcgo", - "in_foundry": false, "is_obsolete": true, "layout": "ontology_detail", "license": { @@ -12389,7 +12370,6 @@ "domain": "health", "homepage": "https://code.google.com/p/epidemiology-ontology/", "id": "epo", - "in_foundry": false, "is_obsolete": true, "layout": "ontology_detail", "products": [ @@ -12478,7 +12458,6 @@ "domain": "health", "homepage": "http://purl.obolibrary.org/obo/flu/", "id": "flu", - "in_foundry": false, "is_obsolete": true, "layout": "ontology_detail", "products": [ @@ -12562,7 +12541,6 @@ "description": "An ontology representation of the LIPIDMAPS nomenclature classification.", "domain": "chemistry and biochemistry", "id": "lipro", - "in_foundry": false, "is_obsolete": true, "layout": "ontology_detail", "tags": [ diff --git a/registry/ontologies.nt b/registry/ontologies.nt index 8fcb74ae6..61ba11a8d 100644 --- a/registry/ontologies.nt +++ b/registry/ontologies.nt @@ -1,3 +1,608 @@ + "All life" . + "Mus" . + "Rattus" . + "Ctenophore" . + "Teleostei" . + "Viridiplantae" . + "Metazoa" . + "Bilateria" . + "Mammalia" . + "Mammalian" . + "Anopheles" . + "Dictyostelium discoideum" . + "Zea" . + "Fungal" . + "Ascomycota" . + "S. pombe" . + "Saccharomyces cerevisiae" . + "Porifera" . + "Caenorhabditis" . + "Platynereis" . + "Cephalopod" . + "spiders" . + "Ixodidae" . + "Drosophila" . + "Hymenoptera" . + "Vertebrata" . + "Danio" . + "Oryzias" . + "Amphibia" . + "Xenopus" . + "Homo sapiens" . +_:Bf6099b1ff8bc28b4abb4d634df48aee9 "Alpha Tom Kodamullil" . +_:Bf6099b1ff8bc28b4abb4d634df48aee9 "alpha.tom.kodamullil@scai.fraunhofer.de" . +_:B606a6adf1598b18ac090c856161946ed "Melek Chaouch" . +_:B606a6adf1598b18ac090c856161946ed "mcmelek@msn.com" . +_:B2cee1c76b364b4fd8f7dd2379f09af70 "Alpha Tom Kodamullil" . +_:B2cee1c76b364b4fd8f7dd2379f09af70 "alpha.tom.kodamullil@scai.fraunhofer.de" . +_:Bb0dd9ee38f4ea7f163f81a1a9262541d "Joshua Klein" . +_:Bb0dd9ee38f4ea7f163f81a1a9262541d "joshua.adam.klein@gmail.com" . +_:B0bbcf9fe959889e175419863335b44ee "George Gkoutos" . +_:B0bbcf9fe959889e175419863335b44ee "g.gkoutos@bham.ac.uk" . +_:B91dea25591ada0a8a3afb24a46eb297a "Frederic Bastian" . +_:B91dea25591ada0a8a3afb24a46eb297a "frederic.bastian@unil.ch" . +_:B5d508c8871650ede0b0069e243307929 "None" . +_:B5d508c8871650ede0b0069e243307929 "noreply@example.com" . +_:B4cd9d0a5e357f65777f303dbbfbc6be6 "Jingshan Huang" . +_:B4cd9d0a5e357f65777f303dbbfbc6be6 "huang@southalabama.edu" . +_:Bd19185a37969c7bfd10e65e1d67e5ab8 "Dalia Alghamdi" . +_:Bd19185a37969c7bfd10e65e1d67e5ab8 "dal.alghamdi92@gmail.com" . +_:B96a975061d1c7ce2c42b3d274cfcf51d "Matt Yoder" . +_:B96a975061d1c7ce2c42b3d274cfcf51d "diapriid@gmail.com" . +_:Bce4bedf6d29f832ed450a5e566f8cd69 "Yongqunh He" . +_:Bce4bedf6d29f832ed450a5e566f8cd69 "yongqunh@med.umich.edu" . +_:Bfbb108e0321731f8113e4116341efd32 "Matt Yoder" . +_:Bfbb108e0321731f8113e4116341efd32 "mjyoder@illinois.edu" . +_:B18d4cfe50d31a5f5cbde6f9eb15bb6e1 "Chris Mungall" . +_:B18d4cfe50d31a5f5cbde6f9eb15bb6e1 "cjmungall@lbl.gov" . +_:B78f5b80ef12957b6e08258ba7301399f "Chris Mungall" . +_:B78f5b80ef12957b6e08258ba7301399f "cjmungall@lbl.gov" . +_:B000d4b229c9e11032a3e700ac0e81738 "Jie Zheng" . +_:B000d4b229c9e11032a3e700ac0e81738 "jiezhen@med.umich.edu" . +_:B7d549d39dde9a668cd9e519be1ca45c9 "Bjoern Peters" . +_:B7d549d39dde9a668cd9e519be1ca45c9 "bpeters@lji.org" . +_:B5019917b9fd47409993d53dd5a2f2abc "Justin Whorton" . +_:B5019917b9fd47409993d53dd5a2f2abc "jmwhorton@uams.edu" . +_:Bba1be3cf99f7183013592a73f41ce5dd "Jie Zheng" . +_:Bba1be3cf99f7183013592a73f41ce5dd "zhengj2007@gmail.com" . +_:Bd2752020699b32610259ff592b5620c1 "Yongqun Oliver He" . +_:Bd2752020699b32610259ff592b5620c1 "yongqunh@med.umich.edu" . +_:B4e1691988c48cf20ee16e59a81032779 "Brian Aevermann" . +_:B4e1691988c48cf20ee16e59a81032779 "baeverma@jcvi.org" . +_:B84d016f9dbcedbacc867693dcba1c9fd "Bill Duncan" . +_:B84d016f9dbcedbacc867693dcba1c9fd "wdduncan@gmail.com" . +_:Bc8480acab56bba6a283677dbbbd6f06a "Yongqun Oliver He" . +_:Bc8480acab56bba6a283677dbbbd6f06a "yongqunh@med.umich.edu" . +_:Bd554f0cacb3f3b61a2464211c2927324 "Edison Ong" . +_:Bd554f0cacb3f3b61a2464211c2927324 "edong@umich.edu" . +_:B002a8a34ae72a076520b9fc13f279e69 "Jingshan Huang" . +_:B002a8a34ae72a076520b9fc13f279e69 "huang@southalabama.edu" . +_:B62e3f41e9463d67180d943eecbc9b79a "Christian-Alexander Dudek" . +_:B62e3f41e9463d67180d943eecbc9b79a "c.dudek@tu-braunschweig.de" . +_:B36a22030665ec3b19fe471103a9d31a6 "Chris Mungall" . +_:B36a22030665ec3b19fe471103a9d31a6 "cjmungall@lbl.gov" . +_:B6ea48b42e18cc80e0df25e281691100e "James C. 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"Terry.Hayamizu@jax.org" . +_:B13184f62c877e48e11d18e44344d958f "Pier Luigi Buttigieg" . +_:B13184f62c877e48e11d18e44344d958f "pier.buttigieg@awi.de" . +_:Be46adbbe61cf99b2f1262a1ba047f4a2 "Alpha Tom Kodamullil" . +_:Be46adbbe61cf99b2f1262a1ba047f4a2 "alpha.tom.kodamullil@scai.fraunhofer.de" . +_:B592ef3883622dd7ff404933e2daf8a20 "Xingyun Liu" . +_:B592ef3883622dd7ff404933e2daf8a20 "xyz19940216@163.com" . +_:B1a860a0e5dedf43b17929fdb26acbae6 "Anne Thessen" . +_:B1a860a0e5dedf43b17929fdb26acbae6 "annethessen@gmail.com" . +_:B55f2d0c44cb85cf3b4045750e6b61a76 "Val Wood" . +_:B55f2d0c44cb85cf3b4045750e6b61a76 "vw253@cam.ac.uk" . +_:B399fff9a2998595f78f46f0cd325257d "Stacia R Engel" . +_:B399fff9a2998595f78f46f0cd325257d "stacia@stanford.edu" . +_:B755e625a97af2041a39330b5f67a6a7b "Damien Goutte-Gattat" . +_:B755e625a97af2041a39330b5f67a6a7b "damien@gerbi-gmb.de" . +_:Bad2b3cf8efd6c578929f045a57ad1361 "Clare Pilgrim" . +_:Bad2b3cf8efd6c578929f045a57ad1361 "cp390@cam.ac.uk" . +_:Bebaa4742aefc6e652d740beb6ed8254f "Clare Pilgrim" . +_:Bebaa4742aefc6e652d740beb6ed8254f "cp390@cam.ac.uk" . +_:B5c8e006ab5fbc082c76a31109459b493 "Clare Pilgrim" . +_:B5c8e006ab5fbc082c76a31109459b493 "cp390@cam.ac.uk" . +_:B8787c025ca949d50d604cdc7f309f6f7 "Georgeta Bordea" . +_:B8787c025ca949d50d604cdc7f309f6f7 "georgeta.bordea@u-bordeaux.fr" . +_:B65a30157956692fce7c785cc88d1a5a4 "Robert Hoehndorf" . +_:B65a30157956692fce7c785cc88d1a5a4 "robert.hoehndorf@kaust.edu.sa" . +_:B599c4cc1de794433c48f020e4aea22ee "Pol Castellano Escuder" . +_:B599c4cc1de794433c48f020e4aea22ee "polcaes@gmail.com" . +_:B5717147f844ce80791eb55dc03d52779 "Damion Dooley" . +_:B5717147f844ce80791eb55dc03d52779 "damion_dooley@sfu.ca" . +_:Ba27ea577e7a048c52bf88a79a9ca50c9 "Meghan Balk" . +_:Ba27ea577e7a048c52bf88a79a9ca50c9 "meghan.balk@gmail.com" . +_:B208d5fbb38b9c3b6bf864abb609f1e8e "Val Wood" . +_:B208d5fbb38b9c3b6bf864abb609f1e8e "vw253@cam.ac.uk" . +_:Bea8b975f4be8e01e2b5c757b321d3e15 "William Hogan" . +_:Bea8b975f4be8e01e2b5c757b321d3e15 "hoganwr@gmail.com" . +_:B4d89a20f3a6b97121aae804d56252745 "Andy Deans" . +_:B4d89a20f3a6b97121aae804d56252745 "adeans@psu.edu" . +_:Be918a84b5a251bd9f55986eb112f33a5 "Lynn Schriml" . +_:Be918a84b5a251bd9f55986eb112f33a5 "lschriml@som.umaryland.edu" . +_:Bd5fd8bb886b623cc322a4873666d231a "Rebecca Jackson" . +_:Bd5fd8bb886b623cc322a4873666d231a "rbca.jackson@gmail.com" . +_:Bf1d9176cae130597e8e79673f0ada9d0 "Damion Dooley" . +_:Bf1d9176cae130597e8e79673f0ada9d0 "damion_dooley@sfu.ca" . +_:Bae11d4a12b7114b10cffbfd11333c1cf "Matthew Brush" . +_:Bae11d4a12b7114b10cffbfd11333c1cf "mhb120@gmail.com" . +_:B6363fed6146179fd70a139932f9f39f5 "Bill Hogan" . +_:B6363fed6146179fd70a139932f9f39f5 "hoganwr@gmail.com" . +_:B03762a618b833dd7a392ee51dfdd268e "Nathan Edwards" . +_:B03762a618b833dd7a392ee51dfdd268e "nje5@georgetown.edu" . +_:Bb4ca467b404499743b5e3aecd3962ebf "Suzi Aleksander" . +_:Bb4ca467b404499743b5e3aecd3962ebf "suzia@stanford.edu" . +_:B33209215f3876f21583f42af50d2390b "Danielle Welter" . +_:B33209215f3876f21583f42af50d2390b "dwelter.ontologist@gmail.com" . +_:Bdb12fe88f5f1c86917c55074677f1930 "Matt Yoder" . +_:Bdb12fe88f5f1c86917c55074677f1930 "diapriid@gmail.com" . +_:B14005ae6f31253c53c7de2450afc82ca "Andrew G. McArthur" . +_:B14005ae6f31253c53c7de2450afc82ca "mcarthua@mcmaster.ca" . +_:Beb1c6bbed18e8646d8a5f45520db846f "Frederic Bastian" . +_:Beb1c6bbed18e8646d8a5f45520db846f "bgee@sib.swiss" . +_:B5141a41f50efa9bdabe64d9bd685d5ce "Frédéric Bastian" . +_:B5141a41f50efa9bdabe64d9bd685d5ce "frederic.bastian@unil.ch" . +_:B69c928dd523761904f31e221cbc21ac0 "Fernanda Dorea" . +_:B69c928dd523761904f31e221cbc21ac0 "fernanda.dorea@sva.se" . +_:B3370be9bcc1d11ddeeb104bdf307b2d0 "Amanda Hicks" . +_:B3370be9bcc1d11ddeeb104bdf307b2d0 "aellenhicks@gmail.com" . +_:B4dad35d204c2b257425d024a723cd5fe "Jie Zheng" . +_:B4dad35d204c2b257425d024a723cd5fe "zhengj2007@gmail.com" . +_:B0b2141a0faa330357acb348cbf20b231 "Mathias Brochhausen" . +_:B0b2141a0faa330357acb348cbf20b231 "mbrochhausen@gmail.com" . +_:B8541c4d2aaf1557257f14ca13e9e7c35 "Meng LIU" . +_:B8541c4d2aaf1557257f14ca13e9e7c35 "liumeng94@sjtu.edu.cn" . +_:Bce47d306bd16890c5d0e145e732cbe3e "Yongqun Oliver He" . +_:Bce47d306bd16890c5d0e145e732cbe3e "yongqunh@med.umich.edu" . +_:B9c9a3de4c04cfd89751d78b5f2dec791 "Lindsay Cowell" . +_:B9c9a3de4c04cfd89751d78b5f2dec791 "Lindsay.Cowell@utsouthwestern.edu" . +_:Bf1fdca517b27ae757d06dc4805ce67f1 "Yongqun Oliver He" . +_:Bf1fdca517b27ae757d06dc4805ce67f1 "yongqunh@med.umich.edu" . +_:Ba7c6e216959db2767c0123c2847c99a5 "Ramona Walls" . +_:Ba7c6e216959db2767c0123c2847c99a5 "rlwalls2008@gmail.com" . +_:B613ea0474fc948c5746b72ac964bb02a "Paul Fabry" . +_:B613ea0474fc948c5746b72ac964bb02a "paul.fabry@usherbrooke.ca" . +_:B0c68fd7a283cb739427c05289d6eb5c4 "Luis A. Gonzalez-Montana" . +_:B0c68fd7a283cb739427c05289d6eb5c4 "lagonzalezmo@unal.edu.co" . +_:B6db195cbda960abcbab8a78e8e362128 "Terry Hayamizu" . +_:B6db195cbda960abcbab8a78e8e362128 "Terry.Hayamizu@jax.org" . +_:Bf3dbae828913179f1a689f352c57b4e4 "Leigh Carmody" . +_:Bf3dbae828913179f1a689f352c57b4e4 "Leigh.Carmody@jax.org" . +_:Bdd869ee551d4ec6a917c105b19d61e75 "Citlalli Mejía-Almonte" . +_:Bdd869ee551d4ec6a917c105b19d61e75 "citlalli.mejiaalmonte@gmail.com" . +_:B530a5625fd64a12ec55afe4b9506242f "Tuan Amith" . +_:B530a5625fd64a12ec55afe4b9506242f "muamith@utmb.edu" . +_:B1632f9d4f10caa66975fbc362f532af0 "Janna Hastings" . +_:B1632f9d4f10caa66975fbc362f532af0 "janna.hastings@gmail.com" . +_:Be8d3bbf8160d5beca71e68089234d2a2 "Janna Hastings" . +_:Be8d3bbf8160d5beca71e68089234d2a2 "janna.hastings@gmail.com" . +_:B3954d2c25b76a20849f96cf717d86514 "Janna Hastings" . +_:B3954d2c25b76a20849f96cf717d86514 "janna.hastings@gmail.com" . +_:B6997ee52001c0824928c3a08324314e4 "Luana Licata" . +_:B6997ee52001c0824928c3a08324314e4 "luana.licata@gmail.com" . +_:B69fa36472e91092453f9738aacccc4f1 "Barry Smith" . +_:B69fa36472e91092453f9738aacccc4f1 "phismith@buffalo.edu" . +_:B7f19c533d636733e115a853d3c6d60e5 "Hilmar Lapp" . +_:B7f19c533d636733e115a853d3c6d60e5 "hilmar.lapp@duke.edu" . +_:B24d8d9b6a31625db9d87dd30230eb51f "Jennifer Smith" . +_:B24d8d9b6a31625db9d87dd30230eb51f "jrsmith@mcw.edu" . +_:B097fb2fc72fc234c1dbd998cf1588c7d "Frédéric Bastian" . +_:B097fb2fc72fc234c1dbd998cf1588c7d "frederic.bastian@unil.ch" . +_:Bf5a2420aa760dbe7708ba3996b7233bc "Pierre-Alain Binz" . +_:Bf5a2420aa760dbe7708ba3996b7233bc "pierre-alain.binz@chuv.ch" . +_:B0725b0fcc9d5230f5cfb10eb261ccda0 "Sabrina Toro" . +_:B0725b0fcc9d5230f5cfb10eb261ccda0 "Sabrina@tislab.org" . +_:Bb3c5658456204ffbb0e162515b5f9be3 "Colin Batchelor" . +_:Bb3c5658456204ffbb0e162515b5f9be3 "batchelorc@rsc.org" . +_:Bce05af490ce79bdee32b5968680fbe66 "Sue Bello" . +_:Bce05af490ce79bdee32b5968680fbe66 "pheno@jax.org" . +_:Bb56dab2e4edc12636f14f05bc373674f "Paul Schofield" . +_:Bb56dab2e4edc12636f14f05bc373674f "pns12@hermes.cam.ac.uk" . +_:Bd619e23c61086c5f9db892811bfb4bed "Mathias Brochhausen" . +_:Bd619e23c61086c5f9db892811bfb4bed "mbrochhausen@uams.edu" . +_:B012e6c423ab6aef5d5a16bbf86f3c2a8 "Bjoern Peters" . +_:B012e6c423ab6aef5d5a16bbf86f3c2a8 "bpeters@lji.org" . + "Gene Ontology AmiGO 2 Browser" . + "AmiGO" . + "Gene Ontology AmiGO 2 Browser" . + "AmiGO (SUBSET)" . + "Bgee gene expression queries" . + "Bgee (gene expression)" . + "RNA Ontology jOWL Browser" . + "RNAO" . + "BioPortal Browser" . + "BioPortal" . + "BioPortal Browser" . + "BioPortal" . + "BioPortal Browser" . + "BioPortal" . + "BioPortal Browser" . + "BioPortal" . + "BioPortal Browser" . + "BioPortal" . + "Planteome browser" . + "Planteome" . + "Planteome browser" . + "Planteome" . + "Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics." . + . + "CC BY 3.0" . + . + "CC BY 4.0" . + . + "CC0 1.0" . + "FANTOM5 Data Portal" . + "FANTOM5" . + "FlyBase Browser" . + "FB" . + "FlyBase Browser" . + "FB" . + "FlyBase Browser" . + "FB" . + "FlyBase Browser" . + "FB" . + "Monarch Phenotype Page" . + "Monarch" . + "Monarch Phenotype Page" . + "Monarch" . + "Artistic License 2.0" . + "PRO Home" . + "PRO" . + "Includes axioms linking to other ontologies, but no imports of those ontologies" . + "http://purl.obolibrary.org/obo/BMONT.owl" . + "http://purl.obolibrary.org/obo/EPIO_merged.owl" . + . + "inactive" . + "Amphibian gross anatomy" . + "anatomy and development" . + _:Bffd63197f79b048dcc8aba62c9659b30 . + . "ADO" . "active" . . @@ -7,28 +612,36 @@ "health" . "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/issues" . "http://purl.obolibrary.org/obo/ado.owl" . - _:Be2931e8a45de595ccfab1ec91a25212c . + _:Bf6099b1ff8bc28b4abb4d634df48aee9 . . . - "BFO" . - "active" . - "The upper level ontology upon which OBO Foundry ontologies are built." . - "Basic Formal Ontology" . - . - "upper" . - "https://github.com/BFO-ontology/BFO/issues" . - "https://groups.google.com/forum/#!forum/bfo-discuss" . - . - "http://purl.obolibrary.org/obo/bfo.owl" . - _:B5cefee9861d5fdd116576a7986d836d7 . - . - . - . - . - "CC BY 4.0" . -_:Be2931e8a45de595ccfab1ec91a25212c "Alpha Tom Kodamullil" . -_:Be2931e8a45de595ccfab1ec91a25212c "alpha.tom.kodamullil@scai.fraunhofer.de" . "http://purl.obolibrary.org/obo/ado.owl" . + "inactive" . + "Animal natural history and life history" . + "organisms" . + _:Bf295e68ebbfd069b215c5f9522f48c94 . + . + "AEO" . + "inactive" . + "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology" . + "Anatomical Entity Ontology" . + . + "anatomy and development" . + "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" . + "http://purl.obolibrary.org/obo/aeo.owl" . + _:Ba5f6e0caf361da57bafe7428205accf4 . + . + . + "http://purl.obolibrary.org/obo/aeo.owl" . + "inactive" . + "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events" . + "Adverse Event Reporting Ontology" . + . + "health" . + _:B39613e15265b3af6e79d5eb00ea18676 . + . + . + "http://purl.obolibrary.org/obo/aero.owl" . "AfPO" . "active" . "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms." . @@ -37,24 +650,22 @@ _:Be2931e8a45de595ccfab1ec91a25212c "alpha.tom. "organisms" . "https://github.com/h3abionet/afpo/issues" . "http://purl.obolibrary.org/obo/afpo.owl" . - _:B7f7cc689c09cd823f52e6c51544489cb . + _:B606a6adf1598b18ac090c856161946ed . . . . . -_:B7f7cc689c09cd823f52e6c51544489cb "Melek Chaouch" . -_:B7f7cc689c09cd823f52e6c51544489cb "mcmelek@msn.com" . - "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies" . - "AfPO (OWL edition)" . - "http://purl.obolibrary.org/obo/afpo.owl" . - "A direct translation of the AfPO (OWL edition) into OBO format" . - "AfPO (OBO edition)" . - "http://purl.obolibrary.org/obo/afpo.obo" . - . "A direct translation of the AfPO (OWL edition) into OBOGraph JSON format" . "AfPO (obographs JSON edition)" . "http://purl.obolibrary.org/obo/afpo.json" . . + "A direct translation of the AfPO (OWL edition) into OBO format" . + "AfPO (OBO edition)" . + "http://purl.obolibrary.org/obo/afpo.obo" . + . + "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies" . + "AfPO (OWL edition)" . + "http://purl.obolibrary.org/obo/afpo.owl" . "AGRO" . "active" . . @@ -78,253 +689,9 @@ _:B7f7cc689c09cd823f52e6c51544489cb "mcmelek@ms "agriculture" . "https://github.com/AgriculturalSemantics/agro/issues/" . "http://purl.obolibrary.org/obo/agro.owl" . - _:B563cabb5fb0de12a18a4b134b602e1f1 . + _:B18df1aee4fd75ae46ace00c269ebeb3c . . . - "ENVO" . - "active" . - . - . - . - . - . - . - . - . - "An ontology of environmental systems, components, and processes." . - "Environment Ontology" . - . - . - . - "environment" . - "https://github.com/EnvironmentOntology/envo/issues/" . - "http://purl.obolibrary.org/obo/envo.owl" . - _:B783794b39f8b6f5adaf20bca9be2e5be . - . - . - . - . - . - . - . - . - "FOODON" . - "active" . - . - . - . - . - . - . - . - . - "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research" . - "Food Ontology" . - . - . - "diet, metabolomics, and nutrition" . - "https://github.com/FoodOntology/foodon/issues/" . - "http://purl.obolibrary.org/obo/foodon.owl" . - _:Bcff931d96e15e24aaedbee9f990514ed . - . - . - . - "GO" . - "active" . - . - . - . - . - . - . - "An ontology for describing the function of genes and gene products" . - "Gene Ontology" . - . - . - . - "biological systems" . - "https://github.com/geneontology/go-ontology/issues/" . - . - "http://purl.obolibrary.org/obo/go.owl" . - _:Bd16bddd10c2f1672eb05327b0e0cb7c1 . - . - . - . - . - . - . - . - . - . - . - . - . - . - "IAO" . - "active" . - "An ontology of information entities." . - "Information Artifact Ontology" . - . - "information" . - "https://github.com/information-artifact-ontology/IAO/issues" . - "http://purl.obolibrary.org/obo/iao.owl" . - _:B41b148c397d5c8720d8e27973f7da301 . - . - . - . - . - . - "NCBITaxon" . - "active" . - "An ontology representation of the NCBI organismal taxonomy" . - "NCBI organismal classification" . - . - "organisms" . - "https://github.com/obophenotype/ncbitaxon/issues" . - . - "http://purl.obolibrary.org/obo/ncbitaxon.owl" . - _:B6432ab17c1aaef2668b463204866f46e . - . - . - . - . - . - . - . - "OBI" . - "active" . - "An integrated ontology for the description of life-science and clinical investigations" . - "Ontology for Biomedical Investigations" . - . - . - "investigations" . - "http://purl.obolibrary.org/obo/obi/tracker" . - "http://groups.google.com/group/obi-users" . - . - "http://purl.obolibrary.org/obo/obi.owl" . - _:Bf9b5bf7a1951fee91a51e816490154ca . - . - . - . - . - . - "PATO" . - "active" . - "An ontology of phenotypic qualities (properties, attributes or characteristics)" . - "Phenotype And Trait Ontology" . - . - . - . - "phenotype" . - "https://github.com/pato-ontology/pato/issues" . - . - "http://purl.obolibrary.org/obo/pato.owl" . - _:Bcfcb1e04408e4de05761efd89077f99c . - . - . - . - . - . - "PECO" . - "active" . - "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." . - "Plant Experimental Conditions Ontology" . - . - . - "investigations" . - "https://github.com/Planteome/plant-experimental-conditions-ontology/issues" . - "http://purl.obolibrary.org/obo/peco.owl" . - _:B63bba832766da2bc5ec153643d760854 . - . - . - . - . - "PO" . - "active" . - . - "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data." . - "Plant Ontology" . - . - . - . - "anatomy and development" . - "https://github.com/Planteome/plant-ontology/issues" . - . - "http://purl.obolibrary.org/obo/po.owl" . - _:Bfa22a3ab9e258b0ba425cbcc3ed5c68d . - . - . - . - . - . - "RO" . - "active" . - "Relationship types shared across multiple ontologies" . - "Relation Ontology" . - . - "upper" . - "https://github.com/oborel/obo-relations/issues" . - "https://groups.google.com/forum/#!forum/obo-relations" . - "http://purl.obolibrary.org/obo/ro.owl" . - _:Baecf273047174f35e8aee41f4fc088de . - . - . - . - . - . - . - . - . - . - "TO" . - "active" . - . - "A controlled vocabulary to describe phenotypic traits in plants." . - "Plant Trait Ontology" . - . - . - "phenotype" . - "https://github.com/Planteome/plant-trait-ontology/issues" . - . - "http://purl.obolibrary.org/obo/to.owl" . - _:Bbb357f0eb619b00224f13986545d5971 . - . - . - . - . - "UO" . - "active" . - "Metrical units for use in conjunction with PATO" . - "Units of measurement ontology" . - . - . - "phenotype" . - "https://github.com/bio-ontology-research-group/unit-ontology/issues" . - "http://purl.obolibrary.org/obo/uo.owl" . - _:Bafc7ede9eae9580284d7d5abde4c9e51 . - . - . - . - . - "XCO" . - "active" . - "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms." . - "Experimental condition ontology" . - . - . - . - "health" . - "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues" . - . - "http://purl.obolibrary.org/obo/xco.owl" . - _:B28a3fc170bd08f717c7951352e0eb0db . - . - . - . - . - "Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics." . -_:B563cabb5fb0de12a18a4b134b602e1f1 "Marie-Angélique Laporte" . -_:B563cabb5fb0de12a18a4b134b602e1f1 "m.a.laporte@cgiar.org" . "Contains all AgrO terms and links to other relevant ontologies." . "AgrO" . "http://purl.obolibrary.org/obo/agro.owl" . @@ -342,82 +709,14 @@ _:B563cabb5fb0de12a18a4b134b602e1f1 "m.a.laport "anatomy and development" . "https://github.com/insect-morphology/aism/issues" . "http://purl.obolibrary.org/obo/aism.owl" . - _:B858388933850291a98184bfb8a7c43e8 . + _:B4a99809731cacf481a4437e16ff51a5b . . . . . - "BSPO" . - "active" . - "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces" . - "Biological Spatial Ontology" . - . - . - "anatomy and development" . - "https://github.com/obophenotype/biological-spatial-ontology/issues" . - "http://purl.obolibrary.org/obo/bspo.owl" . - _:B40b569ed062a727563bcd22c77ad2ad7 . - . - . - . - "CARO" . - "inactive" . - "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species" . - "Common Anatomy Reference Ontology" . - . - "anatomy and development" . - "https://github.com/obophenotype/caro/issues" . - _:B9115bd49c129de887536f790320165c9 . - . - . - "UBERON" . - "active" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies" . - "Uberon multi-species anatomy ontology" . - . - . - . - "anatomy and development" . - . - . - . - . - "https://github.com/obophenotype/uberon/issues" . - "https://lists.sourceforge.net/lists/listinfo/obo-anatomy" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/uberon.owl" . - _:B0562829a56a481f79dde97c00c885675 . - . - . - . - . - . - . - . - . - . -_:B858388933850291a98184bfb8a7c43e8 "Jennifer C. Girón" . -_:B858388933850291a98184bfb8a7c43e8 "entiminae@gmail.com" . - "http://purl.obolibrary.org/obo/aism.owl" . - "http://purl.obolibrary.org/obo/aism.obo" . "http://purl.obolibrary.org/obo/aism.json" . + "http://purl.obolibrary.org/obo/aism.obo" . + "http://purl.obolibrary.org/obo/aism.owl" . "AMPHX" . "active" . . @@ -427,19 +726,15 @@ _:B858388933850291a98184bfb8a7c43e8 "entiminae@ "anatomy and development" . "https://github.com/EBISPOT/amphx_ontology/issues" . "http://purl.obolibrary.org/obo/amphx.owl" . - _:B1583f914e14a9eadba331d1ea1226b1d . + _:Bca9b8aff1ea2a161c46c4d62fe2c4e61 . . . . - . - "CC BY 3.0" . -_:B1583f914e14a9eadba331d1ea1226b1d "Hector Escriva" . -_:B1583f914e14a9eadba331d1ea1226b1d "hescriva@obs-banyuls.fr" . - "http://purl.obolibrary.org/obo/amphx.owl" . "http://purl.obolibrary.org/obo/amphx.obo" . + "http://purl.obolibrary.org/obo/amphx.owl" . + . "APO" . "active" . - . "A structured controlled vocabulary for the phenotypes of Ascomycete fungi" . "Ascomycete phenotype ontology" . . @@ -447,16 +742,12 @@ _:B1583f914e14a9eadba331d1ea1226b1d "hescriva@o "phenotype" . "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues" . "http://purl.obolibrary.org/obo/apo.owl" . - _:B4575e23094b3649ea6febc4edf1580e2 . + _:B399fff9a2998595f78f46f0cd325257d . . . . - "Ascomycota" . - "New mutant phenotype data curation system in the Saccharomyces Genome Database" . -_:B4575e23094b3649ea6febc4edf1580e2 "Stacia R Engel" . -_:B4575e23094b3649ea6febc4edf1580e2 "stacia@stanford.edu" . - "http://purl.obolibrary.org/obo/apo.owl" . "http://purl.obolibrary.org/obo/apo.obo" . + "http://purl.obolibrary.org/obo/apo.owl" . "APOLLO_SV" . "active" . "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation." . @@ -466,12 +757,9 @@ _:B4575e23094b3649ea6febc4edf1580e2 "stacia@sta "health" . "https://github.com/ApolloDev/apollo-sv/issues" . "http://purl.obolibrary.org/obo/apollo_sv.owl" . - _:B516cd614cc967a2c3473bacc016ac682 . + _:Bea8b975f4be8e01e2b5c757b321d3e15 . . . - "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation" . -_:B516cd614cc967a2c3473bacc016ac682 "William Hogan" . -_:B516cd614cc967a2c3473bacc016ac682 "hoganwr@gmail.com" . "http://purl.obolibrary.org/obo/apollo_sv.owl" . "ARO" . "active" . @@ -483,13 +771,26 @@ _:B516cd614cc967a2c3473bacc016ac682 "hoganwr@gm "https://github.com/arpcard/aro/issues" . "https://mailman.mcmaster.ca/mailman/listinfo/card-l" . "http://purl.obolibrary.org/obo/aro.owl" . - _:Bdc7ada3cde1060ffd17d5bbbe2244519 . + _:B14005ae6f31253c53c7de2450afc82ca . . . - "CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database." . -_:Bdc7ada3cde1060ffd17d5bbbe2244519 "Andrew G. McArthur" . -_:Bdc7ada3cde1060ffd17d5bbbe2244519 "mcarthua@mcmaster.ca" . "http://purl.obolibrary.org/obo/aro.owl" . + . + "inactive" . + "Amphibian taxonomy" . + "organisms" . + _:B0cd21e9176d8a9a975df377dc8b29a0f . + . + "inactive" . + "An application ontology built for beta cell genomics studies." . + "Beta Cell Genomics Ontology" . + . + "anatomy and development" . + "https://github.com/obi-bcgo/bcgo/issues" . + _:Bbea6938e15194381e67fba2b37387565 . + . + . + "http://purl.obolibrary.org/obo/bcgo.owl" . "BCO" . "active" . "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys." . @@ -499,23 +800,34 @@ _:Bdc7ada3cde1060ffd17d5bbbe2244519 "mcarthua@m "organisms" . "https://github.com/BiodiversityOntologies/bco/issues" . "http://purl.obolibrary.org/obo/bco.owl" . - _:B3076d996cb160c8eadcfd7574b246312 . + _:Ba7c6e216959db2767c0123c2847c99a5 . . . - . - "CC0 1.0" . - "Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies" . -_:B3076d996cb160c8eadcfd7574b246312 "Ramona Walls" . -_:B3076d996cb160c8eadcfd7574b246312 "rlwalls2008@gmail.com" . "http://purl.obolibrary.org/obo/bco.owl" . - . - "CC BY 4.0" . - "BioPortal Browser" . - "BioPortal" . -_:B5cefee9861d5fdd116576a7986d836d7 "Barry Smith" . -_:B5cefee9861d5fdd116576a7986d836d7 "phismith@buffalo.edu" . - "http://purl.obolibrary.org/obo/bfo.owl" . + "BFO" . + "active" . + "The upper level ontology upon which OBO Foundry ontologies are built." . + "Basic Formal Ontology" . + . + "upper" . + "https://github.com/BFO-ontology/BFO/issues" . + "https://groups.google.com/forum/#!forum/bfo-discuss" . + . + "http://purl.obolibrary.org/obo/bfo.owl" . + _:B69fa36472e91092453f9738aacccc4f1 . + . + . + . "http://purl.obolibrary.org/obo/bfo.obo" . + "http://purl.obolibrary.org/obo/bfo.owl" . + . + "inactive" . + "Bilateria anatomy" . + "anatomy and development" . + _:Bd18e5db72dfa2896f4212de138d85675 . + . + . + "http://purl.obolibrary.org/obo/bila.owl" . "BMONT" . "active" . "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects." . @@ -525,20 +837,29 @@ _:B5cefee9861d5fdd116576a7986d836d7 "phismith@b "https://github.com/SCAI-BIO/BiomarkerOntology/issues" . . "http://purl.obolibrary.org/obo/bmont.owl" . - _:Bb8572de8b9f1268d3ab2e684c1088e7d . + _:B2cee1c76b364b4fd8f7dd2379f09af70 . . . - "BioPortal Ontology Browser" . - "BioPortal" . -_:Bb8572de8b9f1268d3ab2e684c1088e7d "Alpha Tom Kodamullil" . -_:Bb8572de8b9f1268d3ab2e684c1088e7d "alpha.tom.kodamullil@scai.fraunhofer.de" . - "Includes axioms linking to other ontologies, but no imports of those ontologies" . - "http://purl.obolibrary.org/obo/BMONT.owl" . - "Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology." . -_:B40b569ed062a727563bcd22c77ad2ad7 "Chris Mungall" . -_:B40b569ed062a727563bcd22c77ad2ad7 "cjmungall@lbl.gov" . - "http://purl.obolibrary.org/obo/bspo.owl" . + "inactive" . + "Gene Regulation Ontology" . + "chemistry and biochemistry" . + _:Ba655c33f56f7cfcc7ca7e079761f5e9c . + . + "BSPO" . + "active" . + "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces" . + "Biological Spatial Ontology" . + . + . + "anatomy and development" . + "https://github.com/obophenotype/biological-spatial-ontology/issues" . + "http://purl.obolibrary.org/obo/bspo.owl" . + _:B78f5b80ef12957b6e08258ba7301399f . + . + . + . "http://purl.obolibrary.org/obo/bspo.obo" . + "http://purl.obolibrary.org/obo/bspo.owl" . "BTO" . "active" . "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures." . @@ -548,18 +869,26 @@ _:B40b569ed062a727563bcd22c77ad2ad7 "cjmungall@ "anatomy and development" . "https://github.com/BRENDA-Enzymes/BTO/issues" . "http://purl.obolibrary.org/obo/bto.owl" . - _:B5b463a317be2e54afc39b0ddee813e7c . + _:B62e3f41e9463d67180d943eecbc9b79a . . . . . . - "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources" . -_:B5b463a317be2e54afc39b0ddee813e7c "Christian-Alexander Dudek" . -_:B5b463a317be2e54afc39b0ddee813e7c "c.dudek@tu-braunschweig.de" . - "http://purl.obolibrary.org/obo/bto.owl" . - "http://purl.obolibrary.org/obo/bto.obo" . "http://purl.obolibrary.org/obo/bto.json" . + "http://purl.obolibrary.org/obo/bto.obo" . + "http://purl.obolibrary.org/obo/bto.owl" . + "CARO" . + "inactive" . + "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species" . + "Common Anatomy Reference Ontology" . + . + "anatomy and development" . + "https://github.com/obophenotype/caro/issues" . + _:Bc4d2cf095c96c78e642022bf2fc45f67 . + . + . + "http://purl.obolibrary.org/obo/caro.owl" . "CDAO" . "active" . "a formalization of concepts and relations relevant to evolutionary comparative analysis" . @@ -569,12 +898,9 @@ _:B5b463a317be2e54afc39b0ddee813e7c "c.dudek@tu "organisms" . "https://github.com/evoinfo/cdao/issues" . "http://purl.obolibrary.org/obo/cdao.owl" . - _:B0d650509a8a474a63166f7e4ed82347d . + _:B6d910d57bd3d33dde3cd71bba739b29c . . . - "Initial Implementation of a Comparative Data Analysis Ontology" . -_:B0d650509a8a474a63166f7e4ed82347d "Jim Balhoff" . -_:B0d650509a8a474a63166f7e4ed82347d "balhoff@renci.org" . "http://purl.obolibrary.org/obo/cdao.owl" . "CDNO" . "active" . @@ -590,10 +916,28 @@ _:B0d650509a8a474a63166f7e4ed82347d "balhoff@re "diet, metabolomics, and nutrition" . "https://github.com/CompositionalDietaryNutritionOntology/cdno/issues" . "http://purl.obolibrary.org/obo/cdno.owl" . - _:B75a4d981267223e3bad1bb48dfc66979 . + _:B311ca1239db9a3f385ad29b91c385249 . . . . + "http://purl.obolibrary.org/obo/cdno.obo" . + "http://purl.obolibrary.org/obo/cdno.owl" . + . + "inactive" . + "An anatomical and developmental ontology for cephalopods" . + "Cephalopod Ontology" . + . + "anatomy and development" . + "https://github.com/obophenotype/cephalopod-ontology/issues" . + "http://purl.obolibrary.org/obo/ceph.owl" . + _:Bdba2901d08b0651e210f475210b0fdc7 . + . + . + . + "oboformat edition" . + "http://purl.obolibrary.org/obo/ceph.obo" . + "main version" . + "http://purl.obolibrary.org/obo/ceph.owl" . "CHEBI" . "active" . "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds." . @@ -605,7 +949,7 @@ _:B0d650509a8a474a63166f7e4ed82347d "balhoff@re "https://github.com/ebi-chebi/ChEBI/issues" . . "http://purl.obolibrary.org/obo/chebi.owl" . - _:B1d0d51c980cac4302f50c5a8a0cfc912 . + _:Bb3fe0cc2aef24676fdc14e1dc0b8756b . . . . @@ -615,28 +959,15 @@ _:B0d650509a8a474a63166f7e4ed82347d "balhoff@re . . . - . - "CC BY 3.0" . - "Establishing a Common Nutritional Vocabulary - From Food Production to Diet" . -_:B75a4d981267223e3bad1bb48dfc66979 "Liliana Andres Hernandez" . -_:B75a4d981267223e3bad1bb48dfc66979 "landreshdz@gmail.com" . - "http://purl.obolibrary.org/obo/cdno.owl" . - "http://purl.obolibrary.org/obo/cdno.obo" . - "ChEBI: re-engineered for a sustainable future" . - "ChEBI in 2016: Improved services and an expanding collection of metabolites." . - "EBI CHEBI Browser" . - "CHEBI" . -_:B1d0d51c980cac4302f50c5a8a0cfc912 "Adnan Malik" . -_:B1d0d51c980cac4302f50c5a8a0cfc912 "amalik@ebi.ac.uk" . - "http://purl.obolibrary.org/obo/chebi.owl" . - "http://purl.obolibrary.org/obo/chebi.obo" . "http://purl.obolibrary.org/obo/chebi.json" . + "http://purl.obolibrary.org/obo/chebi.obo" . + "http://purl.obolibrary.org/obo/chebi.owl" . "chebi, compressed owl" . "http://purl.obolibrary.org/obo/chebi.owl.gz" . - "chebi_lite, no syns or xrefs" . - "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo" . "chebi_core, no xrefs" . "http://purl.obolibrary.org/obo/chebi/chebi_core.obo" . + "chebi_lite, no syns or xrefs" . + "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo" . "CHEMINF" . "active" . "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them." . @@ -647,14 +978,9 @@ _:B1d0d51c980cac4302f50c5a8a0cfc912 "amalik@ebi "https://github.com/semanticchemistry/semanticchemistry/issues" . "https://groups.google.com/forum/#!forum/cheminf-ontology" . "http://purl.obolibrary.org/obo/cheminf.owl" . - _:Bd3346eb920e3ece61390ab0a357481d6 . + _:B33df1e9ab3ed666a4ed25048190c6c02 . . . - . - "CC0 1.0" . - "The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web" . -_:Bd3346eb920e3ece61390ab0a357481d6 "Egon Willighagen" . -_:Bd3346eb920e3ece61390ab0a357481d6 "egon.willighagen@gmail.com" . "http://purl.obolibrary.org/obo/cheminf.owl" . "CHIRO" . "active" . @@ -672,92 +998,12 @@ _:Bd3346eb920e3ece61390ab0a357481d6 "egon.willi "chemistry and biochemistry" . "https://github.com/obophenotype/chiro/issues" . "http://purl.obolibrary.org/obo/chiro.owl" . - _:B9772d5b59d66a92068287908866682fa . + _:B5ab4154cdb7a903d045af8d87cc3e291 . . . . - "HP" . - "active" . - . - "The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease." . - "Human Phenotype Ontology (HPO)" . - . - . - . - . - . - "phenotype" . - "https://github.com/obophenotype/human-phenotype-ontology/issues/" . - "https://groups.io/g/human-phenotype-ontology" . - . - . - "http://purl.obolibrary.org/obo/hp.owl" . - _:B9135472cdd18c52fa7856953cd9b10f3 . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "MP" . - "active" . - . - "Standard terms for annotating mammalian phenotypic data." . - "Mammalian Phenotype Ontology" . - . - . - . - . - "phenotype" . - "https://github.com/mgijax/mammalian-phenotype-ontology/issues" . - "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" . - . - . - . - "http://purl.obolibrary.org/obo/mp.owl" . - _:B39cfa60d816694cfb810649bd19ba8df . - . - . - . - . - . - . - "PR" . - "active" . - "An ontological representation of protein-related entities" . - "PRotein Ontology (PRO)" . - . - . - "chemistry and biochemistry" . - "https://github.com/PROconsortium/PRoteinOntology/issues" . - . - . - "http://purl.obolibrary.org/obo/pr.owl" . - _:B9ff92ce1c0c2a773a822e8d2931a7429 . - . - . - . - . - . - "Extension of Roles in the ChEBI Ontology" . -_:B9772d5b59d66a92068287908866682fa "Nicole Vasilevsky" . -_:B9772d5b59d66a92068287908866682fa "vasilevs@ohsu.edu" . - "http://purl.obolibrary.org/obo/chiro.owl" . "http://purl.obolibrary.org/obo/chiro.obo" . + "http://purl.obolibrary.org/obo/chiro.owl" . "CHMO" . "active" . "CHMO, the chemical methods ontology, describes methods used to" . @@ -767,11 +1013,9 @@ _:B9772d5b59d66a92068287908866682fa "vasilevs@o "https://github.com/rsc-ontologies/rsc-cmo/issues" . "chemistry-ontologies@googlegroups.com" . "http://purl.obolibrary.org/obo/chmo.owl" . - _:B9450ffb8175fbede4550c8ed82f6214e . + _:Bce71356b12936970ba56b41334509e69 . . . -_:B9450ffb8175fbede4550c8ed82f6214e "Colin Batchelor" . -_:B9450ffb8175fbede4550c8ed82f6214e "batchelorc@rsc.org" . "http://purl.obolibrary.org/obo/chmo.owl" . "CIDO" . "active" . @@ -783,12 +1027,9 @@ _:B9450ffb8175fbede4550c8ed82f6214e "batchelorc "https://github.com/cido-ontology/cido/issues" . "cido-discuss@googlegroups.com" . "http://purl.obolibrary.org/obo/cido.owl" . - _:B9c07f62238cfa01de6b41200cc84542e . + _:Bf9f12a876a97d17a58910ddae193782c . . . - "A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology" . -_:B9c07f62238cfa01de6b41200cc84542e "Yongqun Oliver He" . -_:B9c07f62238cfa01de6b41200cc84542e "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/cido.owl" . "CIO" . "active" . @@ -799,15 +1040,13 @@ _:B9c07f62238cfa01de6b41200cc84542e "yongqunh@m "information" . "https://github.com/BgeeDB/confidence-information-ontology" . "http://purl.obolibrary.org/obo/cio.owl" . - _:Bba679dbafa6b68b6743ba6841b93a68b . + _:Be8c19c3ec5122589d773dd705d09dfc2 . . . . - "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations" . -_:Bba679dbafa6b68b6743ba6841b93a68b "Frédéric Bastian" . -_:Bba679dbafa6b68b6743ba6841b93a68b "frederic.bastian@unil.ch" . - "http://purl.obolibrary.org/obo/cio.owl" . "http://purl.obolibrary.org/obo/cio.obo" . + "http://purl.obolibrary.org/obo/cio.owl" . + . "CL" . "active" . . @@ -817,7 +1056,6 @@ _:Bba679dbafa6b68b6743ba6841b93a68b "frederic.b . . . - . "The Cell Ontology is a structured controlled vocabulary for cell types in animals." . "Cell Ontology" . . @@ -826,7 +1064,7 @@ _:Bba679dbafa6b68b6743ba6841b93a68b "frederic.b "https://github.com/obophenotype/cell-ontology/issues" . "https://groups.google.com/g/cl_edit" . "http://purl.obolibrary.org/obo/cl.owl" . - _:B0b915922f36456c2df858f330cf16c63 . + _:B1d9c1a5f07f517da2fe83986fc8d5091 . . . . @@ -838,57 +1076,42 @@ _:Bba679dbafa6b68b6743ba6841b93a68b "frederic.b . . . - "OMO" . - "active" . - "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." . - "OBO Metadata Ontology" . - . - "information" . - "https://github.com/information-artifact-ontology/ontology-metadata/issues" . - "http://purl.obolibrary.org/obo/omo.owl" . - _:B9d6c6fffb8968fe3027259bcb93d7c9c . - . - . - "Metazoa" . - "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability." . -_:B0b915922f36456c2df858f330cf16c63 "David Osumi-Sutherland" . -_:B0b915922f36456c2df858f330cf16c63 "do12@sanger.ac.uk" . - "Complete ontology, plus inter-ontology axioms, and imports modules" . - "Main CL OWL edition" . - "owl-rdf/xml" . - "http://purl.obolibrary.org/obo/cl.owl" . - "Complete ontology, plus inter-ontology axioms, and imports modules merged in" . - "CL obo format edition" . - "obo" . - "http://purl.obolibrary.org/obo/cl.obo" . "Complete ontology, plus inter-ontology axioms, and imports modules merged in" . "CL OBOGraph-JSON format edition" . "json" . "http://purl.obolibrary.org/obo/cl.json" . - "Basic version, no inter-ontology axioms" . - "Basic CL" . - "owl-rdf/xml" . - "http://purl.obolibrary.org/obo/cl/cl-basic.owl" . - "Basic version, no inter-ontology axioms" . - "Basic CL (OBO version)" . - "obo" . - "http://purl.obolibrary.org/obo/cl/cl-basic.obo" . - "Basic version, no inter-ontology axioms" . - "Basic CL (OBOGraph-JSON version)" . - "json" . - "http://purl.obolibrary.org/obo/cl/cl-basic.json" . - "complete CL but with no imports or external axioms" . - "CL base module" . - "owl-rdf/xml" . - "http://purl.obolibrary.org/obo/cl/cl-base.owl" . - "complete CL but with no imports or external axioms" . - "CL base module (OBO version)" . - "obo" . - "http://purl.obolibrary.org/obo/cl/cl-base.obo" . + "Complete ontology, plus inter-ontology axioms, and imports modules merged in" . + "CL obo format edition" . + "obo" . + "http://purl.obolibrary.org/obo/cl.obo" . + "Complete ontology, plus inter-ontology axioms, and imports modules" . + "Main CL OWL edition" . + "owl-rdf/xml" . + "http://purl.obolibrary.org/obo/cl.owl" . "complete CL but with no imports or external axioms" . "CL base module (OBOGraph-JSON version)" . "json" . "http://purl.obolibrary.org/obo/cl/cl-base.json" . + "complete CL but with no imports or external axioms" . + "CL base module (OBO version)" . + "obo" . + "http://purl.obolibrary.org/obo/cl/cl-base.obo" . + "complete CL but with no imports or external axioms" . + "CL base module" . + "owl-rdf/xml" . + "http://purl.obolibrary.org/obo/cl/cl-base.owl" . + "Basic version, no inter-ontology axioms" . + "Basic CL (OBOGraph-JSON version)" . + "json" . + "http://purl.obolibrary.org/obo/cl/cl-basic.json" . + "Basic version, no inter-ontology axioms" . + "Basic CL (OBO version)" . + "obo" . + "http://purl.obolibrary.org/obo/cl/cl-basic.obo" . + "Basic version, no inter-ontology axioms" . + "Basic CL" . + "owl-rdf/xml" . + "http://purl.obolibrary.org/obo/cl/cl-basic.owl" . "CLAO" . "active" . . @@ -898,14 +1121,12 @@ _:B0b915922f36456c2df858f330cf16c63 "do12@sange "anatomy and development" . "https://github.com/luis-gonzalez-m/Collembola/issues" . "http://purl.obolibrary.org/obo/clao.owl" . - _:B37b2f62e9e7d94f528fae92a2fc1cbcb . + _:B837fb38f8c41efc3e61ee0448cf99f7a . . . . -_:B37b2f62e9e7d94f528fae92a2fc1cbcb "Luis González-Montaña" . -_:B37b2f62e9e7d94f528fae92a2fc1cbcb "lagonzalezmo@unal.edu.co" . - "http://purl.obolibrary.org/obo/clao.owl" . "http://purl.obolibrary.org/obo/clao.obo" . + "http://purl.obolibrary.org/obo/clao.owl" . "CLO" . "active" . . @@ -919,29 +1140,9 @@ _:B37b2f62e9e7d94f528fae92a2fc1cbcb "lagonzalez "anatomy and development" . "https://github.com/CLO-Ontology/CLO/issues" . "http://purl.obolibrary.org/obo/clo.owl" . - _:B858b41984e86951600fec1dad010dac8 . + _:B4d6065ce3c25d521fe0245ebbed51c48 . . . - "DOID" . - "active" . - . - "An ontology for describing the classification of human diseases organized by etiology." . - "Human Disease Ontology" . - . - . - . - "health" . - "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues" . - . - "http://purl.obolibrary.org/obo/doid.owl" . - _:Bdc31d298caea8b7d259c921c9e11d1f1 . - . - . - . - . - "CLO: The Cell Line Ontology" . -_:B858b41984e86951600fec1dad010dac8 "Jie Zheng" . -_:B858b41984e86951600fec1dad010dac8 "zhengj2007@gmail.com" . "http://purl.obolibrary.org/obo/clo.owl" . "CLYH" . "active" . @@ -954,14 +1155,17 @@ _:B858b41984e86951600fec1dad010dac8 "zhengj2007 "anatomy and development" . "https://github.com/EBISPOT/clyh_ontology/issues" . "http://purl.obolibrary.org/obo/clyh.owl" . - _:B5a59447731ade1774b58d60396439d40 . + _:B4d7d547f94abd126d0fee01a83575c54 . . . . -_:B5a59447731ade1774b58d60396439d40 "Lucas Leclere" . -_:B5a59447731ade1774b58d60396439d40 "lucas.leclere@obs-banyuls.fr" . - "http://purl.obolibrary.org/obo/clyh.owl" . "http://purl.obolibrary.org/obo/clyh.obo" . + "http://purl.obolibrary.org/obo/clyh.owl" . + "inactive" . + "CranioMaxilloFacial ontology" . + "health" . + _:Bda001f8c045778bab3d6f7ce8f946231 . + . "CMO" . "active" . "Morphological and physiological measurement records generated from clinical and model organism research and health programs." . @@ -973,19 +1177,13 @@ _:B5a59447731ade1774b58d60396439d40 "lucas.lecl "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues" . . "http://purl.obolibrary.org/obo/cmo.owl" . - _:B7eb0c4a773b5330e3ef13c3cbadbbcaf . + _:Be673989225b0d47c52da3a2a5c40f1d6 . . . . . - "Three ontologies to define phenotype measurement data." . - "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." . - "RGD Ontology Browser" . - "RGD" . -_:B7eb0c4a773b5330e3ef13c3cbadbbcaf "Jennifer Smith" . -_:B7eb0c4a773b5330e3ef13c3cbadbbcaf "jrsmith@mcw.edu" . - "http://purl.obolibrary.org/obo/cmo.owl" . "http://purl.obolibrary.org/obo/cmo.obo" . + "http://purl.obolibrary.org/obo/cmo.owl" . "COB" . "active" . "COB brings together key terms from a wide range of OBO projects to improve interoperability." . @@ -994,15 +1192,13 @@ _:B7eb0c4a773b5330e3ef13c3cbadbbcaf "jrsmith@mc "upper" . "https://github.com/OBOFoundry/COB/issues" . "http://purl.obolibrary.org/obo/cob.owl" . - _:B6cb18e7d7b6e758574be09b1d7eb66bf . + _:B07f67721d19522680808dab054e37892 . . . . . . . -_:B6cb18e7d7b6e758574be09b1d7eb66bf "Bjoern Peters" . -_:B6cb18e7d7b6e758574be09b1d7eb66bf "bpeters@lji.org" . "Core Ontology for Biology and Biomedicine, main ontology" . "COB" . "http://purl.obolibrary.org/obo/cob.owl" . @@ -1033,14 +1229,12 @@ _:B6cb18e7d7b6e758574be09b1d7eb66bf "bpeters@lj "anatomy and development" . "https://github.com/insect-morphology/colao/issues" . "http://purl.obolibrary.org/obo/colao.owl" . - _:Bf4f0b703d24465cdc7674a792ecd4355 . + _:B591b9baaef21a53b57f67d45e41dfb60 . . . . -_:Bf4f0b703d24465cdc7674a792ecd4355 "Jennifer C. Giron" . -_:Bf4f0b703d24465cdc7674a792ecd4355 "entiminae@gmail.com" . - "http://purl.obolibrary.org/obo/colao.owl" . "http://purl.obolibrary.org/obo/colao.obo" . + "http://purl.obolibrary.org/obo/colao.owl" . "CRO" . "active" . "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability." . @@ -1049,32 +1243,25 @@ _:Bf4f0b703d24465cdc7674a792ecd4355 "entiminae@ "information" . "https://github.com/data2health/contributor-role-ontology/issues" . "http://purl.obolibrary.org/obo/cro.owl" . - _:Bfa766e9c27925da0a3faca32db497e28 . + _:Bf31812fc680898052b06ed68552f920b . . . - . - "CC BY 2.0" . -_:Bfa766e9c27925da0a3faca32db497e28 "Marijane White" . -_:Bfa766e9c27925da0a3faca32db497e28 "whimar@ohsu.edu" . "CRO" . "http://purl.obolibrary.org/obo/cro.owl" . + . "CTENO" . "active" . . . - . "An anatomical and developmental ontology for ctenophores (Comb Jellies)" . "Ctenophore Ontology" . . "anatomy and development" . "https://github.com/obophenotype/ctenophore-ontology/issues" . "http://purl.obolibrary.org/obo/cteno.owl" . - _:B89eb7ee771d6d73ec4cfcb33fa4935bc . + _:B2bb698dc81099716bc871321bf2a2d08 . . . - "Ctenophore" . -_:B89eb7ee771d6d73ec4cfcb33fa4935bc "Chris Mungall" . -_:B89eb7ee771d6d73ec4cfcb33fa4935bc "cjmungall@lbl.gov" . "http://purl.obolibrary.org/obo/cteno.owl" . "CTO" . "active" . @@ -1084,11 +1271,9 @@ _:B89eb7ee771d6d73ec4cfcb33fa4935bc "cjmungall@ "health" . "https://github.com/ClinicalTrialOntology/CTO/issues" . "http://purl.obolibrary.org/obo/cto.owl" . - _:B1bb61ffc41cd07b6ccd41ea1f20ce221 . + _:B6f19bb7109185ec393b4f6ea0f44c87e . . . -_:B1bb61ffc41cd07b6ccd41ea1f20ce221 "Dr. Alpha Tom Kodamullil" . -_:B1bb61ffc41cd07b6ccd41ea1f20ce221 "alpha.tom.kodamullil@scai.fraunhofer.de" . "http://purl.obolibrary.org/obo/cto.owl" . "CVDO" . "active" . @@ -1098,15 +1283,19 @@ _:B1bb61ffc41cd07b6ccd41ea1f20ce221 "alpha.tom. "health" . "https://github.com/OpenLHS/CVDO/issues" . "http://purl.obolibrary.org/obo/cvdo.owl" . - _:B89493bf92fd4c2910934b2926138d797 . + _:B026a392d5cc3fb82060e32abec18bf8b . . . -_:B89493bf92fd4c2910934b2926138d797 "Paul Fabry" . -_:B89493bf92fd4c2910934b2926138d797 "paul.fabry@usherbrooke.ca" . "http://purl.obolibrary.org/obo/cvdo.owl" . + . + "inactive" . + "Dendritic cell" . + "anatomy and development" . + _:B9903548c7c71df814768665e121c957f . + . + . "DDANAT" . "active" . - . "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum" . "Dictyostelium discoideum anatomy" . . @@ -1114,20 +1303,16 @@ _:B89493bf92fd4c2910934b2926138d797 "paul.fabry "anatomy and development" . "https://github.com/dictyBase/migration-data/issues" . "http://purl.obolibrary.org/obo/ddanat.owl" . - _:B1a2a31966b0ae6943129b0e03a08f457 . + _:B03beacd11551d5d495e18d7510894bef . . . . . - "Dictyostelium discoideum" . - "An anatomy ontology to represent biological knowledge in Dictyostelium discoideum" . -_:B1a2a31966b0ae6943129b0e03a08f457 "Petra Fey" . -_:B1a2a31966b0ae6943129b0e03a08f457 "pfey@northwestern.edu" . - "http://purl.obolibrary.org/obo/ddanat.owl" . "http://purl.obolibrary.org/obo/ddanat.obo" . + "http://purl.obolibrary.org/obo/ddanat.owl" . + . "DDPHENO" . "active" . - . "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum." . "Dictyostelium discoideum phenotype ontology" . . @@ -1135,16 +1320,13 @@ _:B1a2a31966b0ae6943129b0e03a08f457 "pfey@north "anatomy and development" . "https://github.com/obophenotype/dicty-phenotype-ontology/issues" . "http://purl.obolibrary.org/obo/ddpheno.owl" . - _:B1427410a0ecea4d57323f1932027fdb5 . + _:B5f9c87b447732e5aeed8c780627e221a . . . . . - "dictyBase and the Dicty Stock Center (version 2.0) - a progress report" . -_:B1427410a0ecea4d57323f1932027fdb5 "Petra Fey" . -_:B1427410a0ecea4d57323f1932027fdb5 "pfey@northwestern.edu" . - "http://purl.obolibrary.org/obo/ddpheno.owl" . "http://purl.obolibrary.org/obo/ddpheno.obo" . + "http://purl.obolibrary.org/obo/ddpheno.owl" . "DIDEO" . "active" . "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology" . @@ -1153,15 +1335,24 @@ _:B1427410a0ecea4d57323f1932027fdb5 "pfey@north "chemistry and biochemistry" . "https://github.com/DIDEO/DIDEO/issues" . "http://purl.obolibrary.org/obo/dideo.owl" . - _:B75bdf95259b82ff54e7c028e279b2448 . + _:B98e23069a6b41711d0f5c1a6413b6e9c . . . -_:B75bdf95259b82ff54e7c028e279b2448 "Mathias Brochhausen" . -_:B75bdf95259b82ff54e7c028e279b2448 "mbrochhausen@gmail.com" . "http://purl.obolibrary.org/obo/dideo.owl" . + "inactive" . + "A formal represention for drug-drug interactions knowledge." . + "The Drug-Drug Interactions Ontology" . + . + . + "health" . + "https://github.com/labda/DINTO/issues" . + _:B8d36a820f6c1fa716499d74d5f69190f . + . + . + "http://purl.obolibrary.org/obo/dinto.owl" . + . "DISDRIV" . "active" . - . "Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI." . "Disease Drivers Ontology" . . @@ -1169,29 +1360,35 @@ _:B75bdf95259b82ff54e7c028e279b2448 "mbrochhaus "https://github.com/DiseaseOntology/DiseaseDriversOntology/issues" . . "http://purl.obolibrary.org/obo/disdriv.owl" . - _:Bab030953e4a2b3a459c39ed5a2f36b74 . + _:B6a9fdf234a72b9f283611ec353368714 . . . . - "Homo sapiens" . - "DO Browser" . - "DO" . -_:Bab030953e4a2b3a459c39ed5a2f36b74 "Lynn Schriml" . -_:Bab030953e4a2b3a459c39ed5a2f36b74 "lynn.schriml@gmail.com" . "http://purl.obolibrary.org/obo/disdriv.owl" . - "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data" . - "The Human Disease Ontology 2022 update" . - "DO Browser" . - "DO" . -_:Bdc31d298caea8b7d259c921c9e11d1f1 "Lynn Schriml" . -_:Bdc31d298caea8b7d259c921c9e11d1f1 "lynn.schriml@gmail.com" . - "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies." . - "http://purl.obolibrary.org/obo/doid.owl" . + . + "DOID" . + "active" . + "An ontology for describing the classification of human diseases organized by etiology." . + "Human Disease Ontology" . + . + . + . + "health" . + "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues" . + . + "http://purl.obolibrary.org/obo/doid.owl" . + _:B9eaea26328b45da97f44c58140b02d37 . + . + . + . + . "Disease Ontology, OBO format. This file omits the equivalent axioms." . "http://purl.obolibrary.org/obo/doid.obo" . + "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies." . + "http://purl.obolibrary.org/obo/doid.owl" . + . "FBcv" . "active" . - . "An ontology of commonly encountered and/or high level Drosophila phenotypes." . "Drosophila Phenotype Ontology" . . @@ -1200,34 +1397,14 @@ _:Bdc31d298caea8b7d259c921c9e11d1f1 "lynn.schri "https://github.com/FlyBase/drosophila-phenotype-ontology/issues" . . "http://purl.obolibrary.org/obo/dpo.owl" . - _:B95a2295b0ff03c8e42a19d6df6149095 . + _:B3aa580ac4a6c3c62611bd7a89d41583d . . . . . - "Drosophila" . - "The Drosophila phenotype ontology." . - "FlyBase Browser" . - "FB" . -_:B95a2295b0ff03c8e42a19d6df6149095 "Clare Pilgrim" . -_:B95a2295b0ff03c8e42a19d6df6149095 "cp390@cam.ac.uk" . - "http://purl.obolibrary.org/obo/dpo.owl" . - "http://purl.obolibrary.org/obo/dpo.obo" . "http://purl.obolibrary.org/obo/dpo.json" . - "FBcv" . - "active" . - "A structured controlled vocabulary used for various aspects of annotation by FlyBase." . - "FlyBase Controlled Vocabulary" . - . - "organisms" . - "https://github.com/FlyBase/flybase-controlled-vocabulary/issues" . - . - "http://purl.obolibrary.org/obo/fbcv.owl" . - _:B584c2b77dd402f7472e881aacad2daaf . - . - . - . - . + "http://purl.obolibrary.org/obo/dpo.obo" . + "http://purl.obolibrary.org/obo/dpo.owl" . "DRON" . "active" . "An ontology to support comparative effectiveness researchers studying claims data." . @@ -1237,12 +1414,9 @@ _:B95a2295b0ff03c8e42a19d6df6149095 "cp390@cam. "health" . "https://github.com/ufbmi/dron/issues" . "http://purl.obolibrary.org/obo/dron.owl" . - _:B41802c6bf4dda441a83c16510789e724 . + _:Bdf3cfe3ebfa0c6e477a0b26a3d1ada4d . . . - "Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request" . -_:B41802c6bf4dda441a83c16510789e724 "William Hogan" . -_:B41802c6bf4dda441a83c16510789e724 "hoganwr@gmail.com" . "http://purl.obolibrary.org/obo/dron.owl" . "DUO" . "active" . @@ -1254,11 +1428,9 @@ _:B41802c6bf4dda441a83c16510789e724 "hoganwr@gm "information" . "https://github.com/EBISPOT/DUO/issues" . "http://purl.obolibrary.org/obo/duo.owl" . - _:Bb8de3b2a2223fd27ccd292a0385ae215 . + _:B7c7e333ed41c77421d1daf7e6fc0e215 . . . -_:Bb8de3b2a2223fd27ccd292a0385ae215 "Melanie Courtot" . -_:Bb8de3b2a2223fd27ccd292a0385ae215 "mcourtot@gmail.com" . "http://purl.obolibrary.org/obo/duo.owl" . "ECAO" . "active" . @@ -1271,14 +1443,12 @@ _:Bb8de3b2a2223fd27ccd292a0385ae215 "mcourtot@g "anatomy and development" . "https://github.com/echinoderm-ontology/ecao_ontology/issues" . "http://purl.obolibrary.org/obo/ecao.owl" . - _:B8a95b8c8323df68e0adc7b085ba21483 . + _:Bcab3ff7907c4712374c0d566e1f54a9d . . . . -_:B8a95b8c8323df68e0adc7b085ba21483 "Charles Ettensohn" . -_:B8a95b8c8323df68e0adc7b085ba21483 "ettensohn@cmu.edu" . - "http://purl.obolibrary.org/obo/ecao.owl" . "http://purl.obolibrary.org/obo/ecao.obo" . + "http://purl.obolibrary.org/obo/ecao.owl" . "ECO" . "active" . "An ontology for experimental and other evidence statements." . @@ -1292,20 +1462,12 @@ _:B8a95b8c8323df68e0adc7b085ba21483 "ettensohn@ "https://github.com/evidenceontology/evidenceontology/issues" . . "http://purl.obolibrary.org/obo/eco.owl" . - _:Bfff1db38e5e63b0ecb606f7adc3fed4d . + _:B1154fa5d4cb44f2a2a844ccc02782893 . . . . - "ECO: the Evidence and Conclusion Ontology, an update for 2022." . - "ECO, the Evidence & Conclusion Ontology: community standard for evidence information." . - "Standardized description of scientific evidence using the Evidence Ontology (ECO)" . - "NSF ABI-1458400" . - "ECO Browser" . - "ECO" . -_:Bfff1db38e5e63b0ecb606f7adc3fed4d "Michelle Giglio" . -_:Bfff1db38e5e63b0ecb606f7adc3fed4d "mgiglio@som.umaryland.edu" . - "http://purl.obolibrary.org/obo/eco.owl" . "http://purl.obolibrary.org/obo/eco.obo" . + "http://purl.obolibrary.org/obo/eco.owl" . "ECOCORE" . "active" . . @@ -1324,33 +1486,12 @@ _:Bfff1db38e5e63b0ecb606f7adc3fed4d "mgiglio@so "environment" . "https://github.com/EcologicalSemantics/ecocore/issues" . "http://purl.obolibrary.org/obo/ecocore.owl" . - _:B9af26cf34e713e4e5d9b4ee5f5e482ab . + _:B485a9e8104717e2a52ccbc2090ae6148 . . . . - "PCO" . - "active" . - . - . - . - . - . - . - . - . - "An ontology about groups of interacting organisms such as populations and communities" . - "Population and Community Ontology" . - . - "environment" . - "https://github.com/PopulationAndCommunityOntology/pco/issues" . - "http://purl.obolibrary.org/obo/pco.owl" . - _:B2319aded8dcffa6b8f202530d11558a2 . - . - . -_:B9af26cf34e713e4e5d9b4ee5f5e482ab "Pier Luigi Buttigieg" . -_:B9af26cf34e713e4e5d9b4ee5f5e482ab "p.buttigieg@gmail.com" . - "http://purl.obolibrary.org/obo/ecocore.owl" . "http://purl.obolibrary.org/obo/ecocore.obo" . + "http://purl.obolibrary.org/obo/ecocore.owl" . "ECTO" . "active" . . @@ -1372,7 +1513,7 @@ _:B9af26cf34e713e4e5d9b4ee5f5e482ab "p.buttigie "environment" . "https://github.com/EnvironmentOntology/environmental-exposure-ontology/issues" . "http://purl.obolibrary.org/obo/ecto.owl" . - _:B1491ce1fabe91add302c3f85cedb4f3a . + _:B623c37b5758082d79747ad852db26b51 . . . . @@ -1380,79 +1521,54 @@ _:B9af26cf34e713e4e5d9b4ee5f5e482ab "p.buttigie . . . - "ExO" . - "active" . - "Vocabularies for describing exposure data to inform understanding of environmental health." . - "Exposure ontology" . - . - "health" . - "https://github.com/CTDbase/exposure-ontology/issues" . - "http://purl.obolibrary.org/obo/exo.owl" . - _:B5861c3516a7292d68f069ab8cf5276b0 . - . - . - . - "MAXO" . - "active" . - . - . - . - . - . - . - . - . - . - "The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations." . - "Medical Action Ontology" . - . - "health" . - "https://github.com/monarch-initiative/MAxO/issues" . - "http://purl.obolibrary.org/obo/maxo.owl" . - _:B57f0d16f0d8dd6b65ef7531723f3733e . - . - . - . - . - . - . - . - "NBO" . - "active" . - "An ontology of human and animal behaviours and behavioural phenotypes" . - "Neuro Behavior Ontology" . - . - . - "biological systems" . - "https://github.com/obo-behavior/behavior-ontology/issues" . - . - "http://purl.obolibrary.org/obo/nbo.owl" . - _:B146e00bc160f27c07821f595836e8f2a . - . - . - "NCIT" . - "active" . - "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental." . - "NCI Thesaurus OBO Edition" . - . - "health" . - "https://github.com/ncit-obo-org/ncit-obo-edition/issues" . - "http://purl.obolibrary.org/obo/ncit.owl" . - _:B7984f1594cdf033cd123916310ffd3e7 . - . - . - . -_:B1491ce1fabe91add302c3f85cedb4f3a "Anne Thessen" . -_:B1491ce1fabe91add302c3f85cedb4f3a "annethessen@gmail.com" . - "http://purl.obolibrary.org/obo/ecto.owl" . - "http://purl.obolibrary.org/obo/ecto.obo" . "http://purl.obolibrary.org/obo/ecto.json" . - "http://purl.obolibrary.org/obo/ecto/ecto-base.owl" . - "http://purl.obolibrary.org/obo/ecto/ecto-base.obo" . + "http://purl.obolibrary.org/obo/ecto.obo" . + "http://purl.obolibrary.org/obo/ecto.owl" . "http://purl.obolibrary.org/obo/ecto/ecto-base.json" . + "http://purl.obolibrary.org/obo/ecto/ecto-base.obo" . + "http://purl.obolibrary.org/obo/ecto/ecto-base.owl" . + . + "inactive" . + "Human developmental anatomy, timed version" . + "anatomy and development" . + _:B7f7b40254ab5c01fe8634f61fc2a28a2 . + . + . + "inactive" . + "Human developmental anatomy, abstract version" . + "anatomy and development" . + _:Bc767b19183da5dac312f5c6a4fb1f031 . + . + "inactive" . + . + . + . + "A structured controlled vocabulary of stage-specific anatomical structures of the developing human." . + "Human developmental anatomy, abstract" . + . + . + "anatomy and development" . + "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" . + "http://purl.obolibrary.org/obo/ehdaa2.owl" . + _:Be7baae183b84d8fe5bdcd64aa4ae7ee1 . + . + . + . + "http://purl.obolibrary.org/obo/ehdaa2.obo" . + "http://purl.obolibrary.org/obo/ehdaa2.owl" . + . + "inactive" . + "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)." . + "Mouse gross anatomy and development, timed" . + "anatomy and development" . + _:B202fbf1adaa80a7bfe4aa39621ec3b5e . + . + . + . + "http://purl.obolibrary.org/obo/emap.owl" . + . "EMAPA" . "active" . - . "An ontology for mouse anatomy covering embryonic development and postnatal stages." . "Mouse Developmental Anatomy Ontology" . . @@ -1463,36 +1579,66 @@ _:B1491ce1fabe91add302c3f85cedb4f3a "annethesse "anatomy and development" . "https://github.com/obophenotype/developmental-mouse-anatomy-ontology/issues" . "http://purl.obolibrary.org/obo/emapa.owl" . - _:Bfd6310b9b38ff839dbb3e76f4292a1e0 . + _:B72871918c0eb76db6ece98178f41f608 . . . . - "Mus" . - "An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature" . - "EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update" . - "Mouse Anatomy Ontologies: Enhancements and Tools for Exploring and Integrating Biomedical Data" . - "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)" . -_:Bfd6310b9b38ff839dbb3e76f4292a1e0 "Terry Hayamizu" . -_:Bfd6310b9b38ff839dbb3e76f4292a1e0 "Terry.Hayamizu@jax.org" . - "http://purl.obolibrary.org/obo/emapa.owl" . "http://purl.obolibrary.org/obo/emapa.obo" . - "The environment ontology: contextualising biological and biomedical entities" . - "The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation" . -_:B783794b39f8b6f5adaf20bca9be2e5be "Pier Luigi Buttigieg" . -_:B783794b39f8b6f5adaf20bca9be2e5be "pier.buttigieg@awi.de" . - "main ENVO OWL release" . - "http://purl.obolibrary.org/obo/envo.owl" . + "http://purl.obolibrary.org/obo/emapa.owl" . + "ENVO" . + "active" . + . + . + . + . + . + . + . + . + "An ontology of environmental systems, components, and processes." . + "Environment Ontology" . + . + . + . + "environment" . + "https://github.com/EnvironmentOntology/envo/issues/" . + "http://purl.obolibrary.org/obo/envo.owl" . + _:B13184f62c877e48e11d18e44344d958f . + . + . + . + . + . + . + . + . "ENVO in obographs JSON format" . "http://purl.obolibrary.org/obo/envo.json" . "ENVO in OBO Format. May be lossy" . "http://purl.obolibrary.org/obo/envo.obo" . + "main ENVO OWL release" . + "http://purl.obolibrary.org/obo/envo.owl" . + "GSC Lite subset of ENVO" . + "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo" . + . "OBO-Basic edition of ENVO" . "http://purl.obolibrary.org/obo/envo/subsets/envo-basic.obo" . "Earth Microbiome Project subset" . "http://purl.obolibrary.org/obo/envo/subsets/envoEmpo.owl" . - "GSC Lite subset of ENVO" . - "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo" . - . + "inactive" . + "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." . + "Plant Environment Ontology" . + . + . + "environment" . + "https://github.com/Planteome/plant-environment-ontology/issues" . + _:Be0fc0224c1a51a1bf2797d8501a6a014 . + . + . + . + . + "http://purl.obolibrary.org/obo/eo.obo" . + "http://purl.obolibrary.org/obo/eo.owl" . "EPIO" . "active" . . @@ -1502,14 +1648,44 @@ _:B783794b39f8b6f5adaf20bca9be2e5be "pier.butti "health" . "https://github.com/SCAI-BIO/EpilepsyOntology/issues" . "http://purl.obolibrary.org/obo/epio.owl" . - _:B9397ec4e0e1bf7a5556690662df3860d . + _:Be46adbbe61cf99b2f1262a1ba047f4a2 . . . . -_:B9397ec4e0e1bf7a5556690662df3860d "Alpha Tom Kodamullil" . -_:B9397ec4e0e1bf7a5556690662df3860d "alpha.tom.kodamullil@scai.fraunhofer.de" . "http://purl.obolibrary.org/obo/epio.owl" . - "http://purl.obolibrary.org/obo/EPIO_merged.owl" . + "inactive" . + "An ontology designed to support the semantic annotation of epidemiology resources" . + "Epidemiology Ontology" . + "health" . + . + . + "http://purl.obolibrary.org/obo/epo.owl" . + "inactive" . + "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens." . + "eagle-i resource ontology" . + . + "information" . + _:Bcaf922049e1ceca0d2604116d2e68e37 . + . + . + "http://purl.obolibrary.org/obo/ero.owl" . + "EUPATH" . + "inactive" . + "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org)." . + "VEuPathDB ontology" . + . + . + "organisms" . + "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues" . + "http://purl.obolibrary.org/obo/eupath.owl" . + _:B67355862b282a10af24a7db3f9a788b8 . + . + . + "http://purl.obolibrary.org/obo/eupath.owl" . + "inactive" . + "eVOC (Expressed Sequence Annotation for Humans)" . + "anatomy and development" . + _:B037449246117337ee151e0def5c3ec09 . "EXMO" . "active" . "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise." . @@ -1519,35 +1695,39 @@ _:B9397ec4e0e1bf7a5556690662df3860d "alpha.tom. "health" . "https://github.com/Exercise-Medicine-Ontology/EXMO/issues" . "http://purl.obolibrary.org/obo/exmo.owl" . - _:B16cf5f994ce1f22495f5c25cf58b2336 . + _:B592ef3883622dd7ff404933e2daf8a20 . . . - "Core reference ontology for individualized exercise prescription" . -_:B16cf5f994ce1f22495f5c25cf58b2336 "Xingyun Liu" . -_:B16cf5f994ce1f22495f5c25cf58b2336 "xyz19940216@163.com" . "http://purl.obolibrary.org/obo/exmo.owl" . -_:B5861c3516a7292d68f069ab8cf5276b0 "Anne Thessen" . -_:B5861c3516a7292d68f069ab8cf5276b0 "annethessen@gmail.com" . - "http://purl.obolibrary.org/obo/exo.owl" . + "ExO" . + "active" . + "Vocabularies for describing exposure data to inform understanding of environmental health." . + "Exposure ontology" . + . + "health" . + "https://github.com/CTDbase/exposure-ontology/issues" . + "http://purl.obolibrary.org/obo/exo.owl" . + _:B1a860a0e5dedf43b17929fdb26acbae6 . + . + . + . "http://purl.obolibrary.org/obo/exo.obo" . + "http://purl.obolibrary.org/obo/exo.owl" . + . "FAO" . "active" . - . "A structured controlled vocabulary for the anatomy of fungi." . "Fungal gross anatomy" . . "anatomy and development" . "https://github.com/obophenotype/fungal-anatomy-ontology/issues" . "http://purl.obolibrary.org/obo/fao.owl" . - _:B641a57cd52f5fa1c0787b1bab7fda06a . + _:B55f2d0c44cb85cf3b4045750e6b61a76 . . . . - "Fungal" . -_:B641a57cd52f5fa1c0787b1bab7fda06a "Val Wood" . -_:B641a57cd52f5fa1c0787b1bab7fda06a "vw253@cam.ac.uk" . - "http://purl.obolibrary.org/obo/fao.owl" . "http://purl.obolibrary.org/obo/fao.obo" . + "http://purl.obolibrary.org/obo/fao.owl" . "FBbi" . "active" . . @@ -1560,23 +1740,19 @@ _:B641a57cd52f5fa1c0787b1bab7fda06a "vw253@cam. "https://github.com/foundingGIDE/fbbi/issues" . . "http://purl.obolibrary.org/obo/fbbi.owl" . - _:Bed954496b4b761631133c08ddd6a4732 . + _:B755e625a97af2041a39330b5f67a6a7b . . . . . . - "BioPortal Browser" . - "BioPortal" . -_:Bed954496b4b761631133c08ddd6a4732 "Damien Goutte-Gattat" . -_:Bed954496b4b761631133c08ddd6a4732 "damien@gerbi-gmb.de" . - "http://purl.obolibrary.org/obo/fbbi.owl" . "http://purl.obolibrary.org/obo/fbbi.obo" . - "http://purl.obolibrary.org/obo/fbbi/fbbi-base.owl" . + "http://purl.obolibrary.org/obo/fbbi.owl" . "http://purl.obolibrary.org/obo/fbbi/fbbi-base.obo" . + "http://purl.obolibrary.org/obo/fbbi/fbbi-base.owl" . + . "FBbt" . "active" . - . "An ontology representing the gross anatomy of Drosophila melanogaster." . "Drosophila gross anatomy" . . @@ -1590,40 +1766,38 @@ _:Bed954496b4b761631133c08ddd6a4732 "damien@ger . . "http://purl.obolibrary.org/obo/fbbt.owl" . - _:Bed69027055ae8269984d180fd77072e0 . + _:Bad2b3cf8efd6c578929f045a57ad1361 . . . . . . . - "The Drosophila anatomy ontology" . - "A strategy for building neuroanatomy ontologies" . - "The Virtual Fly Brain Browser and Query Interface" . - "FlyBase: anatomical data, images and queries" . - "FlyBase Browser" . - "FB" . - "Virtual Fly Brain" . - "VFB" . - "BioPortal Browser" . - "BioPortal" . -_:Bed69027055ae8269984d180fd77072e0 "Clare Pilgrim" . -_:Bed69027055ae8269984d180fd77072e0 "cp390@cam.ac.uk" . - "http://purl.obolibrary.org/obo/fbbt.owl" . - "http://purl.obolibrary.org/obo/fbbt.obo" . "http://purl.obolibrary.org/obo/fbbt.json" . - "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.owl" . + "http://purl.obolibrary.org/obo/fbbt.obo" . + "http://purl.obolibrary.org/obo/fbbt.owl" . "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.obo" . - "FlyBase Browser" . - "FB" . -_:B584c2b77dd402f7472e881aacad2daaf "Clare Pilgrim" . -_:B584c2b77dd402f7472e881aacad2daaf "cp390@cam.ac.uk" . - "http://purl.obolibrary.org/obo/fbcv.owl" . - "http://purl.obolibrary.org/obo/fbcv.obo" . + "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.owl" . + "FBcv" . + "active" . + "A structured controlled vocabulary used for various aspects of annotation by FlyBase." . + "FlyBase Controlled Vocabulary" . + . + "organisms" . + "https://github.com/FlyBase/flybase-controlled-vocabulary/issues" . + . + "http://purl.obolibrary.org/obo/fbcv.owl" . + _:Bebaa4742aefc6e652d740beb6ed8254f . + . + . + . + . "http://purl.obolibrary.org/obo/fbcv.json" . + "http://purl.obolibrary.org/obo/fbcv.obo" . + "http://purl.obolibrary.org/obo/fbcv.owl" . + . "FBdv" . "active" . - . "A structured controlled vocabulary of the development of Drosophila melanogaster." . "Drosophila development" . . @@ -1631,22 +1805,27 @@ _:B584c2b77dd402f7472e881aacad2daaf "cp390@cam. "http://purl.obolibrary.org/obo/fbdv/tracker" . . "http://purl.obolibrary.org/obo/fbdv.owl" . - _:B78464228a45022f3a1567f95b2d29a89 . + _:B5c8e006ab5fbc082c76a31109459b493 . . . . . . . - "FlyBase Browser" . - "FB" . -_:B78464228a45022f3a1567f95b2d29a89 "Clare Pilgrim" . -_:B78464228a45022f3a1567f95b2d29a89 "cp390@cam.ac.uk" . - "http://purl.obolibrary.org/obo/fbdv.owl" . - "http://purl.obolibrary.org/obo/fbdv.obo" . "http://purl.obolibrary.org/obo/fbdv.json" . - "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.owl" . + "http://purl.obolibrary.org/obo/fbdv.obo" . + "http://purl.obolibrary.org/obo/fbdv.owl" . "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.obo" . + "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.owl" . + . + "inactive" . + "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase." . + "Fly taxonomy" . + "organisms" . + _:B92ad4f6fed9a9b8daf7898f52d79c5d2 . + . + . + "http://purl.obolibrary.org/obo/fbsp.owl" . "FIDEO" . "active" . "Food-Drug interactions automatically extracted from scientific literature" . @@ -1655,15 +1834,24 @@ _:B78464228a45022f3a1567f95b2d29a89 "cp390@cam. "diet, metabolomics, and nutrition" . "https://gitub.u-bordeaux.fr/erias/fideo/issues" . "http://purl.obolibrary.org/obo/fideo.owl" . - _:Bf9f045e124571683b510f12afe88f367 . + _:B8787c025ca949d50d604cdc7f309f6f7 . . . -_:Bf9f045e124571683b510f12afe88f367 "Georgeta Bordea" . -_:Bf9f045e124571683b510f12afe88f367 "georgeta.bordea@u-bordeaux.fr" . "http://purl.obolibrary.org/obo/fideo.owl" . + "orphaned" . + "An ontology of physico-chemical methods and properties." . + "Physico-chemical methods and properties" . + "chemistry and biochemistry" . + "http://purl.obolibrary.org/obo/fix.owl" . + _:Ba9ef986741869f750ab08e03c55f5402 . + . + . + . + "http://purl.obolibrary.org/obo/fix.obo" . + "http://purl.obolibrary.org/obo/fix.owl" . + . "FLOPO" . "active" . - . "Traits and phenotypes of flowering plants occurring in digitized Floras" . "Flora Phenotype Ontology" . . @@ -1671,14 +1859,35 @@ _:Bf9f045e124571683b510f12afe88f367 "georgeta.b "phenotype" . "https://github.com/flora-phenotype-ontology/flopoontology/issues" . "http://purl.obolibrary.org/obo/flopo.owl" . - _:B7a8fbc3dd78848f19dcfd1d51cfd4d63 . + _:B65a30157956692fce7c785cc88d1a5a4 . . . - "Viridiplantae" . - "The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants" . -_:B7a8fbc3dd78848f19dcfd1d51cfd4d63 "Robert Hoehndorf" . -_:B7a8fbc3dd78848f19dcfd1d51cfd4d63 "robert.hoehndorf@kaust.edu.sa" . "http://purl.obolibrary.org/obo/flopo.owl" . + "inactive" . + "Influenza Ontology" . + "health" . + "http://purl.obolibrary.org/obo/flu/tracker" . + _:Bf5ce37e835f524b3e67a01e45f378d02 . + . + . + "http://purl.obolibrary.org/obo/flu.owl" . + . + "FMA" . + "inactive" . + "This is currently a slimmed down version of FMA" . + "Foundational Model of Anatomy Ontology (subset)" . + . + . + . + . + "anatomy and development" . + "https://bitbucket.org/uwsig/fma/issues" . + "http://purl.obolibrary.org/obo/fma.owl" . + _:B9302e0b022d115cf30004ee639ca1189 . + . + . + . + "http://purl.obolibrary.org/obo/fma.owl" . "FOBI" . "active" . . @@ -1691,31 +1900,33 @@ _:B7a8fbc3dd78848f19dcfd1d51cfd4d63 "robert.hoe "diet, metabolomics, and nutrition" . "https://github.com/pcastellanoescuder/FoodBiomarkerOntology/issues" . "http://purl.obolibrary.org/obo/fobi.owl" . - _:Bfcc8b1433dfc08b3004f7ff832450950 . + _:B599c4cc1de794433c48f020e4aea22ee . . . - "FOBI: an ontology to represent food intake data and associate it with metabolomic data" . - "The fobitools framework: the first steps towards food enrichment analysis" . -_:Bfcc8b1433dfc08b3004f7ff832450950 "Pol Castellano Escuder" . -_:Bfcc8b1433dfc08b3004f7ff832450950 "polcaes@gmail.com" . "FOBI is an ontology to represent food intake data and associate it with metabolomic data" . "owl-rdf/xml" . "http://purl.obolibrary.org/obo/fobi.owl" . - "inactive" . - "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." . - "Plant Environment Ontology" . - . - . - "environment" . - "https://github.com/Planteome/plant-environment-ontology/issues" . - _:B7622a31d5e97c6c084951a700545bff5 . - . - . - . - . - "FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration" . -_:Bcff931d96e15e24aaedbee9f990514ed "Damion Dooley" . -_:Bcff931d96e15e24aaedbee9f990514ed "damion_dooley@sfu.ca" . + "FOODON" . + "active" . + . + . + . + . + . + . + . + . + "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research" . + "Food Ontology" . + . + . + "diet, metabolomics, and nutrition" . + "https://github.com/FoodOntology/foodon/issues/" . + "http://purl.obolibrary.org/obo/foodon.owl" . + _:B5717147f844ce80791eb55dc03d52779 . + . + . + . "FoodOn ontology with import file references and over 9,000 food products" . "owl-rdf/xml" . "http://purl.obolibrary.org/obo/foodon.owl" . @@ -1738,36 +1949,19 @@ _:Bcff931d96e15e24aaedbee9f990514ed "damion_doo "phenotype" . "https://github.com/futres/fovt/issues" . "http://purl.obolibrary.org/obo/fovt.owl" . - _:B73234f1cbe9d15792a9e93c1e8ecb91b . + _:Ba27ea577e7a048c52bf88a79a9ca50c9 . . . . . . - "OBA" . - "active" . - "A collection of biological attributes (traits) covering all kingdoms of life." . - "Ontology of Biological Attributes" . - . - . - "phenotype" . - "https://github.com/obophenotype/bio-attribute-ontology/issues" . - "http://purl.obolibrary.org/obo/oba.owl" . - _:B044781272e4863f3d8413836a440fe6d . - . - . - . - . - . -_:B73234f1cbe9d15792a9e93c1e8ecb91b "Meghan Balk" . -_:B73234f1cbe9d15792a9e93c1e8ecb91b "meghan.balk@gmail.com" . - "http://purl.obolibrary.org/obo/fovt.owl" . "http://purl.obolibrary.org/obo/fovt.obo" . - "http://purl.obolibrary.org/obo/fovt/fovt-base.owl" . + "http://purl.obolibrary.org/obo/fovt.owl" . "http://purl.obolibrary.org/obo/fovt/fovt-base.obo" . + "http://purl.obolibrary.org/obo/fovt/fovt-base.owl" . + . "FYPO" . "active" . - . "FYPO is a formal ontology of phenotypes observed in fission yeast." . "Fission Yeast Phenotype Ontology" . . @@ -1775,16 +1969,12 @@ _:B73234f1cbe9d15792a9e93c1e8ecb91b "meghan.bal "phenotype" . "https://github.com/pombase/fypo/issues" . "http://purl.obolibrary.org/obo/fypo.owl" . - _:B5d3309e7ef6758251fb2fc41a5ecd16f . + _:B208d5fbb38b9c3b6bf864abb609f1e8e . . . . - "S. pombe" . - "FYPO: The Fission Yeast Phenotype Ontology." . -_:B5d3309e7ef6758251fb2fc41a5ecd16f "Val Wood" . -_:B5d3309e7ef6758251fb2fc41a5ecd16f "vw253@cam.ac.uk" . - "http://purl.obolibrary.org/obo/fypo.owl" . "http://purl.obolibrary.org/obo/fypo.obo" . + "http://purl.obolibrary.org/obo/fypo.owl" . "GALLONT" . "active" . . @@ -1801,32 +1991,14 @@ _:B5d3309e7ef6758251fb2fc41a5ecd16f "vw253@cam. "phenotype" . "https://github.com/adeans/gallont/issues" . "http://purl.obolibrary.org/obo/gallont.owl" . - _:Be02ea616eadee604b679fb26188d810c . + _:B4d89a20f3a6b97121aae804d56252745 . . . . . - "PORO" . - "active" . - . - . - . - "An ontology covering the anatomy of the taxon Porifera (sponges)" . - "Porifera Ontology" . - . - . - "anatomy and development" . - "https://github.com/obophenotype/porifera-ontology/issues" . - "http://purl.obolibrary.org/obo/poro.owl" . - _:Be4a13e6cfa1d612e6b5f38cf40525cf6 . - . - . - . -_:Be02ea616eadee604b679fb26188d810c "Andy Deans" . -_:Be02ea616eadee604b679fb26188d810c "adeans@psu.edu" . - "http://purl.obolibrary.org/obo/gallont.owl" . "http://purl.obolibrary.org/obo/gallont.json" . "http://purl.obolibrary.org/obo/gallont.obo" . + "http://purl.obolibrary.org/obo/gallont.owl" . "GAZ" . "active" . "A gazetteer constructed on ontological principles. The countries are actively maintained." . @@ -1836,15 +2008,13 @@ _:Be02ea616eadee604b679fb26188d810c "adeans@psu "https://github.com/EnvironmentOntology/gaz/issues" . "https://groups.google.com/forum/#!forum/obo-gazetteer" . "http://purl.obolibrary.org/obo/gaz.owl" . - _:Bc26e86e73782591c11797c5af2a0204a . + _:Be918a84b5a251bd9f55986eb112f33a5 . . . . . -_:Bc26e86e73782591c11797c5af2a0204a "Lynn Schriml" . -_:Bc26e86e73782591c11797c5af2a0204a "lschriml@som.umaryland.edu" . - "http://purl.obolibrary.org/obo/gaz.owl" . "http://purl.obolibrary.org/obo/gaz.obo" . + "http://purl.obolibrary.org/obo/gaz.owl" . "A country specific subset of the GAZ." . "GAZ countries" . "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl" . @@ -1856,11 +2026,9 @@ _:Bc26e86e73782591c11797c5af2a0204a "lschriml@s "organisms" . "https://github.com/IHCC-cohorts/GECKO/issues" . "http://purl.obolibrary.org/obo/gecko.owl" . - _:B39ee0e7ed3fbe4456521dc3149260120 . + _:Bd5fd8bb886b623cc322a4873666d231a . . . -_:B39ee0e7ed3fbe4456521dc3149260120 "Rebecca Jackson" . -_:B39ee0e7ed3fbe4456521dc3149260120 "rbca.jackson@gmail.com" . "http://purl.obolibrary.org/obo/gecko.owl" . "GENEPIO" . "active" . @@ -1875,12 +2043,10 @@ _:B39ee0e7ed3fbe4456521dc3149260120 "rbca.jacks "health" . "https://github.com/GenEpiO/genepio/issues/" . "http://purl.obolibrary.org/obo/genepio.owl" . - _:Bd1944641824caf4ead86fdbe502915e2 . + _:Bf1d9176cae130597e8e79673f0ada9d0 . . . . -_:Bd1944641824caf4ead86fdbe502915e2 "Damion Dooley" . -_:Bd1944641824caf4ead86fdbe502915e2 "damion_dooley@sfu.ca" . "http://purl.obolibrary.org/obo/genepio.owl" . . "GENO" . @@ -1891,11 +2057,9 @@ _:Bd1944641824caf4ead86fdbe502915e2 "damion_doo "biological systems" . "https://github.com/monarch-initiative/GENO-ontology/issues" . "http://purl.obolibrary.org/obo/geno.owl" . - _:Bd248312246fd4864d2ca6a722d53efae . + _:Bae11d4a12b7114b10cffbfd11333c1cf . . . -_:Bd248312246fd4864d2ca6a722d53efae "Matthew Brush" . -_:Bd248312246fd4864d2ca6a722d53efae "mhb120@gmail.com" . "GENO" . "http://purl.obolibrary.org/obo/geno.owl" . "GEO" . @@ -1906,11 +2070,9 @@ _:Bd248312246fd4864d2ca6a722d53efae "mhb120@gma "environment" . "https://github.com/ufbmi/geographical-entity-ontology/issues" . "http://purl.obolibrary.org/obo/geo.owl" . - _:B591e20228079657489726fbf5ddcd984 . + _:B6363fed6146179fd70a139932f9f39f5 . . . -_:B591e20228079657489726fbf5ddcd984 "Bill Hogan" . -_:B591e20228079657489726fbf5ddcd984 "hoganwr@gmail.com" . "http://purl.obolibrary.org/obo/geo.owl" . "GNO" . "active" . @@ -1923,105 +2085,144 @@ _:B591e20228079657489726fbf5ddcd984 "hoganwr@gm . . "http://purl.obolibrary.org/obo/gno.owl" . - _:Bcfc13522362a6cdcb4bd9bec22865eb3 . + _:B03762a618b833dd7a392ee51dfdd268e . . . . . - "GNOme - Glycan Naming and Subsumption Ontology" . - "GNOme Glycan Structure Browser" . - "Structure Browser" . - "GNOme Glycan Composition Browser" . - "Composition Browser" . -_:Bcfc13522362a6cdcb4bd9bec22865eb3 "Nathan Edwards" . -_:Bcfc13522362a6cdcb4bd9bec22865eb3 "nje5@georgetown.edu" . - "Glycan Naming and Subsumption Ontology, OWL format (primary)" . - "http://purl.obolibrary.org/obo/gno.owl" . - "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)" . - "http://purl.obolibrary.org/obo/gno.obo" . "Glycan Naming and Subsumption Ontology, JSON format (automated conversion from OWL)" . "http://purl.obolibrary.org/obo/gno.json" . - "Bridging axioms between nifstd and go" . - "GO bridge to NIFSTD" . - . - . - "The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments." . - "All life" . - "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium" . - "The Gene Ontology resource: enriching a GOld mine" . - "Gene Ontology AmiGO 2 Browser" . - "AmiGO" . -_:Bd16bddd10c2f1672eb05327b0e0cb7c1 "Suzi Aleksander" . -_:Bd16bddd10c2f1672eb05327b0e0cb7c1 "suzia@stanford.edu" . - "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies" . - "GO (OWL edition)" . - "http://purl.obolibrary.org/obo/go.owl" . - . - "Equivalent to go.owl, in obo format" . - "GO (OBO Format edition)" . - "http://purl.obolibrary.org/obo/go.obo" . - . + "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)" . + "http://purl.obolibrary.org/obo/gno.obo" . + "Glycan Naming and Subsumption Ontology, OWL format (primary)" . + "http://purl.obolibrary.org/obo/gno.owl" . + . + "GO" . + "active" . + . + . + . + . + . + "An ontology for describing the function of genes and gene products" . + "Gene Ontology" . + . + . + . + "biological systems" . + "https://github.com/geneontology/go-ontology/issues/" . + . + "http://purl.obolibrary.org/obo/go.owl" . + _:Bb4ca467b404499743b5e3aecd3962ebf . + . + . + . + . + . + . + . + . + . + . + . + . + . "Equivalent to go.owl, in obograph json format" . "GO (JSON edition)" . "http://purl.obolibrary.org/obo/go.json" . . + "Equivalent to go.owl, in obo format" . + "GO (OBO Format edition)" . + "http://purl.obolibrary.org/obo/go.obo" . + . + "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies" . + "GO (OWL edition)" . + "http://purl.obolibrary.org/obo/go.owl" . + . + "Bridging axioms between nifstd and go" . + "GO bridge to NIFSTD" . + . + . + "As go-plus.owl, in obographs json format" . + "GO-Plus" . + "http://purl.obolibrary.org/obo/go/extensions/go-plus.json" . + . "The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies" . "GO-Plus" . "http://purl.obolibrary.org/obo/go/extensions/go-plus.owl" . . + "Classes added to ncbitaxon for groupings such as prokaryotes" . + "GO Taxon Groupings" . + "http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl" . + . "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" . "GO Base Module" . "http://purl.obolibrary.org/obo/go/go-base.owl" . . - "As go-plus.owl, in obographs json format" . - "GO-Plus" . - "http://purl.obolibrary.org/obo/go/extensions/go-plus.json" . - . - "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies." . - "GO-Basic, Filtered, for use with legacy tools" . - "http://purl.obolibrary.org/obo/go/go-basic.obo" . - . "As go-basic.obo, in json format" . "GO-Basic, Filtered, for use with legacy tools (JSON)" . "http://purl.obolibrary.org/obo/go/go-basic.json" . . - "Classes added to ncbitaxon for groupings such as prokaryotes" . - "GO Taxon Groupings" . - "http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl" . - . - "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." . - "GO (OWL edition), daily snapshot release" . - "http://purl.obolibrary.org/obo/go/snapshot/go.owl" . - . + "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies." . + "GO-Basic, Filtered, for use with legacy tools" . + "http://purl.obolibrary.org/obo/go/go-basic.obo" . + . "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." . "GO (OBO Format edition), daily snapshot release" . "http://purl.obolibrary.org/obo/go/snapshot/go.obo" . . - "HANCESTRO" . - "active" . - "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies." . - "Human Ancestry Ontology" . - . - . - "organisms" . - "https://github.com/EBISPOT/hancestro/issues" . - "http://purl.obolibrary.org/obo/hancestro.owl" . - _:Bb60619c78c6b66e065476655bcfe445d . - . - . - . - "A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog" . -_:Bb60619c78c6b66e065476655bcfe445d "Danielle Welter" . -_:Bb60619c78c6b66e065476655bcfe445d "dwelter.ontologist@gmail.com" . - "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies" . - "HANCESTRO" . - "http://purl.obolibrary.org/obo/hancestro.owl" . - "Base version of HANCESTRO" . - "HANCESTRO Base" . - "http://purl.obolibrary.org/obo/hancestro-base.owl" . - "HAO" . + "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." . + "GO (OWL edition), daily snapshot release" . + "http://purl.obolibrary.org/obo/go/snapshot/go.owl" . + . + "inactive" . + "Cereal Plant Gross Anatomy" . + "anatomy and development" . + _:B2331b13fa7002a84fbf6873cf03d98c9 . + . + "GSSO" . + "active" . + "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences." . + "Gender, Sex, and Sexual Orientation (GSSO) ontology" . + . + "organisms" . + "https://github.com/Superraptor/GSSO/issues" . + "http://purl.obolibrary.org/obo/gsso.owl" . + _:B49b956288f5360fce62fa68ec87d3be2 . + . + . + . + . + "http://purl.obolibrary.org/obo/gsso.json" . + "http://purl.obolibrary.org/obo/gsso.obo" . + "http://purl.obolibrary.org/obo/gsso.owl" . + "inactive" . + "Habronattus courtship" . + "organisms" . + _:B5209b0f3445dbda959ab1355747d6010 . + . + "HANCESTRO" . + "active" . + "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies." . + "Human Ancestry Ontology" . + . + . + "organisms" . + "https://github.com/EBISPOT/hancestro/issues" . + "http://purl.obolibrary.org/obo/hancestro.owl" . + _:B33209215f3876f21583f42af50d2390b . + . + . + . + "Base version of HANCESTRO" . + "HANCESTRO Base" . + "http://purl.obolibrary.org/obo/hancestro-base.owl" . + "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies" . + "HANCESTRO" . + "http://purl.obolibrary.org/obo/hancestro.owl" . + . + "HAO" . "active" . - . "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)" . "Hymenoptera Anatomy Ontology" . . @@ -2029,17 +2230,13 @@ _:Bb60619c78c6b66e065476655bcfe445d "dwelter.on "anatomy and development" . "https://github.com/hymao/hao/issues" . "http://purl.obolibrary.org/obo/hao.owl" . - _:B07b3fae5f0f0293d1693ad8d2d6576ab . + _:Bdb12fe88f5f1c86917c55074677f1930 . . . . . - "Hymenoptera" . - "A gross anatomy ontology for hymenoptera" . -_:B07b3fae5f0f0293d1693ad8d2d6576ab "Matt Yoder" . -_:B07b3fae5f0f0293d1693ad8d2d6576ab "diapriid@gmail.com" . - "http://purl.obolibrary.org/obo/hao.owl" . "http://purl.obolibrary.org/obo/hao.obo" . + "http://purl.obolibrary.org/obo/hao.owl" . "http://purl.obolibrary.org/obo/hao/depictions.owl" . "HOM" . "active" . @@ -2050,13 +2247,119 @@ _:B07b3fae5f0f0293d1693ad8d2d6576ab "diapriid@g "anatomy and development" . "https://github.com/BgeeDB/homology-ontology/issues" . "http://purl.obolibrary.org/obo/hom.owl" . - _:B3ae47bfc4d890a9fb581bfb207331049 . + _:Beb1c6bbed18e8646d8a5f45520db846f . . . - "An ontology to clarify homology-related concepts" . -_:B3ae47bfc4d890a9fb581bfb207331049 "Frederic Bastian" . -_:B3ae47bfc4d890a9fb581bfb207331049 "bgee@sib.swiss" . "http://purl.obolibrary.org/obo/hom.owl" . + . + "HP" . + "active" . + "The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease." . + "Human Phenotype Ontology (HPO)" . + . + . + . + . + . + "phenotype" . + "https://github.com/obophenotype/human-phenotype-ontology/issues/" . + "https://groups.io/g/human-phenotype-ontology" . + . + . + "http://purl.obolibrary.org/obo/hp.owl" . + _:B8049f4daaa43646974e77e88d76e5db5 . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format." . + "Official HPO release in obographs JSON format" . + "json" . + "http://purl.obolibrary.org/obo/hp.json" . + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." . + "Official HPO release in OBO format" . + "obo" . + "http://purl.obolibrary.org/obo/hp.obo" . + "Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML)." . + "Official HPO release in OWL" . + "owl" . + "http://purl.obolibrary.org/obo/hp.owl" . + "https://hpo.jax.org/app/data/annotations" . + "HPO gene to phenotype annotations" . + "tsv" . + "http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt" . + "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format." . + "HPO base release in obographs JSON format" . + "obo" . + "http://purl.obolibrary.org/obo/hp/hp-base.json" . + "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format." . + "HPO base release in OBO format" . + "obo" . + "http://purl.obolibrary.org/obo/hp/hp-base.obo" . + "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format." . + "HPO base release in OWL format" . + "owl" . + "http://purl.obolibrary.org/obo/hp/hp-base.owl" . + "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format." . + "HPO full release in obographs JSON format" . + "json" . + "http://purl.obolibrary.org/obo/hp/hp-full.json" . + "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format." . + "HPO full release in OBO format" . + "obo" . + "http://purl.obolibrary.org/obo/hp/hp-full.obo" . + "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format." . + "HPO full release in OWL format" . + "owl" . + "http://purl.obolibrary.org/obo/hp/hp-full.owl" . + "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format." . + "HPO International Edition in obographs JSON format" . + "json" . + "http://purl.obolibrary.org/obo/hp/hp-international.json" . + "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format." . + "HPO International Edition in OBO format" . + "obo" . + "http://purl.obolibrary.org/obo/hp/hp-international.obo" . + "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format." . + "HPO International Edition in OWL format" . + "owl" . + "http://purl.obolibrary.org/obo/hp/hp-international.owl" . + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format." . + "HPO simple, manually classified, without imports in obographs JSON format" . + "json" . + "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json" . + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." . + "HPO simple, manually classified, without imports in OBO format" . + "obo" . + "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.obo" . + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format." . + "HPO simple, manually classified, without imports in OWL format" . + "owl" . + "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl" . + "https://hpo.jax.org/app/data/annotations" . + "HPO Annotations (Phenotype to Disease)" . + "tsv" . + "http://purl.obolibrary.org/obo/hp/phenotype.hpoa" . + "https://hpo.jax.org/app/data/annotations" . + "HPO phenotype to gene annotations" . + "tsv" . + "http://purl.obolibrary.org/obo/hp/phenotype_to_genes.txt" . "HsapDv" . "active" . "Life cycle stages for Human" . @@ -2065,15 +2368,13 @@ _:B3ae47bfc4d890a9fb581bfb207331049 "bgee@sib.s "anatomy and development" . "https://github.com/obophenotype/developmental-stage-ontologies/issues" . "http://purl.obolibrary.org/obo/hsapdv.owl" . - _:B67135e3a7de8e7693b5c2651569c17ac . + _:B5141a41f50efa9bdabe64d9bd685d5ce . . . . . -_:B67135e3a7de8e7693b5c2651569c17ac "Frédéric Bastian" . -_:B67135e3a7de8e7693b5c2651569c17ac "frederic.bastian@unil.ch" . - "http://purl.obolibrary.org/obo/hsapdv.owl" . "http://purl.obolibrary.org/obo/hsapdv.obo" . + "http://purl.obolibrary.org/obo/hsapdv.owl" . "HSO" . "active" . . @@ -2087,12 +2388,10 @@ _:B67135e3a7de8e7693b5c2651569c17ac "frederic.b "health" . "https://github.com/SVA-SE/HSO/issues/" . "http://purl.obolibrary.org/obo/hso.owl" . - _:B95bf7518accfa5ba5924ee0b7766953e . + _:B69c928dd523761904f31e221cbc21ac0 . . . . -_:B95bf7518accfa5ba5924ee0b7766953e "Fernanda Dorea" . -_:B95bf7518accfa5ba5924ee0b7766953e "fernanda.dorea@sva.se" . "http://purl.obolibrary.org/obo/hso.owl" . . "HTN" . @@ -2103,27 +2402,35 @@ _:B95bf7518accfa5ba5924ee0b7766953e "fernanda.d "health" . "https://github.com/aellenhicks/htn_owl/issues" . "http://purl.obolibrary.org/obo/htn.owl" . - _:B5443ecfd7e69ed87fca925cd404b296b . + _:B3370be9bcc1d11ddeeb104bdf307b2d0 . . . -_:B5443ecfd7e69ed87fca925cd404b296b "Amanda Hicks" . -_:B5443ecfd7e69ed87fca925cd404b296b "aellenhicks@gmail.com" . "HTN" . "http://purl.obolibrary.org/obo/htn.owl" . -_:B41b148c397d5c8720d8e27973f7da301 "Jie Zheng" . -_:B41b148c397d5c8720d8e27973f7da301 "zhengj2007@gmail.com" . + "IAO" . + "active" . + "An ontology of information entities." . + "Information Artifact Ontology" . + . + "information" . + "https://github.com/information-artifact-ontology/IAO/issues" . + "http://purl.obolibrary.org/obo/iao.owl" . + _:B4dad35d204c2b257425d024a723cd5fe . + . + . + . + . + . "http://purl.obolibrary.org/obo/iao.owl" . - "IAO ontology metadata" . - "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl" . - . - "IAO dev" . - "http://purl.obolibrary.org/obo/iao/dev/iao.owl" . "An ontology based on a theory of document acts describing what people can do with documents" . "ontology of document acts" . "http://purl.obolibrary.org/obo/iao/d-acts.owl" . - _:B097fa008f9f1e8cd54b0f83718c69383 . -_:B097fa008f9f1e8cd54b0f83718c69383 "Mathias Brochhausen" . -_:B097fa008f9f1e8cd54b0f83718c69383 "mbrochhausen@gmail.com" . + _:B0b2141a0faa330357acb348cbf20b231 . + "IAO dev" . + "http://purl.obolibrary.org/obo/iao/dev/iao.owl" . + "IAO ontology metadata" . + "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl" . + . "ICEO" . "active" . "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs)." . @@ -2133,12 +2440,9 @@ _:B097fa008f9f1e8cd54b0f83718c69383 "mbrochhaus "microbiology" . "https://github.com/ontoice/ICEO/issues" . "http://purl.obolibrary.org/obo/iceo.owl" . - _:B33bc2d74f2c08a7cee514279a2f7737f . + _:B8541c4d2aaf1557257f14ca13e9e7c35 . . . - "ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements" . -_:B33bc2d74f2c08a7cee514279a2f7737f "Meng LIU" . -_:B33bc2d74f2c08a7cee514279a2f7737f "liumeng94@sjtu.edu.cn" . "http://purl.obolibrary.org/obo/iceo.owl" . "ICO" . "active" . @@ -2148,15 +2452,13 @@ _:B33bc2d74f2c08a7cee514279a2f7737f "liumeng94@ "investigations" . "https://github.com/ICO-ontology/ICO/issues" . "http://purl.obolibrary.org/obo/ico.owl" . - _:Bc3b3be190989e407d02726c67460c75b . + _:Bce47d306bd16890c5d0e145e732cbe3e . . . -_:Bc3b3be190989e407d02726c67460c75b "Yongqun Oliver He" . -_:Bc3b3be190989e407d02726c67460c75b "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ico.owl" . + . "IDO" . "active" . - . "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain." . "Infectious Disease Ontology" . . @@ -2164,13 +2466,31 @@ _:Bc3b3be190989e407d02726c67460c75b "yongqunh@m "health" . "https://github.com/infectious-disease-ontology/infectious-disease-ontology/issues" . "http://purl.obolibrary.org/obo/ido.owl" . - _:B426976a10c8962a217e9bc94e40445f2 . + _:B9c9a3de4c04cfd89751d78b5f2dec791 . . . - "The Infectious Disease Ontology in the age of COVID-19" . -_:B426976a10c8962a217e9bc94e40445f2 "Lindsay Cowell" . -_:B426976a10c8962a217e9bc94e40445f2 "Lindsay.Cowell@utsouthwestern.edu" . "http://purl.obolibrary.org/obo/ido.owl" . + "inactive" . + "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it." . + "Malaria Ontology" . + . + "health" . + "http://purl.obolibrary.org/obo/idomal.owl" . + _:B7aaa316b668d542972a1bf748cd4fab8 . + . + . + . + "http://purl.obolibrary.org/obo/idomal.obo" . + "http://purl.obolibrary.org/obo/idomal.owl" . + "inactive" . + "Event (INOH pathway ontology)" . + "chemistry and biochemistry" . + . + "inactive" . + "Molecule role (INOH Protein name/family name ontology)" . + "chemistry and biochemistry" . + _:B395dcbca6bfc989ae6713cacf5845eee . + . "INO" . "active" . "An ontology of interactions and interaction networks" . @@ -2180,13 +2500,34 @@ _:B426976a10c8962a217e9bc94e40445f2 "Lindsay.Co "biological systems" . "https://github.com/INO-ontology/ino/issues" . "http://purl.obolibrary.org/obo/ino.owl" . - _:B748ae9d8aa5032db4fae096109d017b1 . + _:Bf1fdca517b27ae757d06dc4805ce67f1 . . . - "Development and application of an Interaction Network Ontology for literature mining of vaccine-associated gene-gene interactions" . -_:B748ae9d8aa5032db4fae096109d017b1 "Yongqun Oliver He" . -_:B748ae9d8aa5032db4fae096109d017b1 "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ino.owl" . + "inactive" . + "Protein Domains" . + "chemistry and biochemistry" . + _:B72df52a434c5cde5f212176ce97febe8 . + . + "KISAO" . + "active" . + "A classification of algorithms for simulating biology, their parameters, and their outputs" . + "Kinetic Simulation Algorithm Ontology" . + . + . + "simulation" . + . + . + "https://github.com/SED-ML/KiSAO/issues" . + . + . + . + "http://purl.obolibrary.org/obo/kisao.owl" . + _:B4fd9c805162e9b0ef94f8316ab10f820 . + . + . + "http://purl.obolibrary.org/obo/kisao.owl" . + . "LABO" . "active" . . @@ -2195,7 +2536,6 @@ _:B748ae9d8aa5032db4fae096109d017b1 "yongqunh@m . . . - . "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents." . "clinical LABoratory Ontology" . . @@ -2203,60 +2543,9 @@ _:B748ae9d8aa5032db4fae096109d017b1 "yongqunh@m "information" . "https://github.com/OpenLHS/LABO/issues" . "http://purl.obolibrary.org/obo/labo.owl" . - _:Bcd612ec5e22d0d52ec5aa0c54ad678f5 . + _:B613ea0474fc948c5746b72ac964bb02a . . . - "OGMS" . - "active" . - . - "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities" . - "Ontology for General Medical Science" . - . - . - . - "health" . - "https://github.com/OGMS/ogms/issues" . - "http://purl.obolibrary.org/obo/ogms.owl" . - _:Bee1a01f0c7c5949e452b9f208307fe8f . - . - . - "inactive" . - "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)" . - "Ontologized MIABIS" . - . - "health" . - "https://github.com/OMIABIS/omiabis-dev/issues" . - _:B6f41a68401dea9a4a06dca1c40912507 . - . - . - "OMRSE" . - "active" . - . - "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations." . - "Ontology for Modeling and Representation of Social Entities" . - . - . - "health" . - "https://github.com/mcwdsi/OMRSE/issues" . - "http://purl.obolibrary.org/obo/omrse.owl" . - _:Bf77669ed844ce14e32d8c71e40df850a . - . - . - "OPMI" . - "active" . - "The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relations associated with precision medicine and related investigations at different conditions." . - "Ontology of Precision Medicine and Investigation" . - . - "investigations" . - "https://github.com/OPMI/opmi/issues" . - "http://groups.google.com/group/opmi-discuss" . - "http://purl.obolibrary.org/obo/opmi.owl" . - _:Bc11458b29c8e05b6dae837d6fff46f46 . - . - . - "LABO: An Ontology for Laboratory Test Prescription and Reporting" . -_:Bcd612ec5e22d0d52ec5aa0c54ad678f5 "Paul Fabry" . -_:Bcd612ec5e22d0d52ec5aa0c54ad678f5 "paul.fabry@usherbrooke.ca" . "http://purl.obolibrary.org/obo/labo.owl" . "LEPAO" . "active" . @@ -2273,40 +2562,89 @@ _:Bcd612ec5e22d0d52ec5aa0c54ad678f5 "paul.fabry "anatomy and development" . "https://github.com/insect-morphology/lepao/issues" . "http://purl.obolibrary.org/obo/lepao.owl" . - _:B583f45751b5191b8beca6389a2668dd5 . + _:B0c68fd7a283cb739427c05289d6eb5c4 . . . . -_:B583f45751b5191b8beca6389a2668dd5 "Luis A. Gonzalez-Montana" . -_:B583f45751b5191b8beca6389a2668dd5 "lagonzalezmo@unal.edu.co" . - "http://purl.obolibrary.org/obo/lepao.owl" . "http://purl.obolibrary.org/obo/lepao.obo" . + "http://purl.obolibrary.org/obo/lepao.owl" . + "inactive" . + "An ontology representation of the LIPIDMAPS nomenclature classification." . + "Lipid Ontology" . + "chemistry and biochemistry" . + _:Bd843b8a22b41f0d28e3d2902ef271181 . + "inactive" . + "Loggerhead nesting" . + "organisms" . + _:Bc15f23a2b8709e5cf72cb65accb293bf . + . + . "MA" . "active" . - . "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)." . "Mouse adult gross anatomy" . . "anatomy and development" . "https://github.com/obophenotype/adult-mouse-anatomy-ontology/issues" . "http://purl.obolibrary.org/obo/ma.owl" . - _:B0d117f18ffd33da0f54eb7621114b395 . + _:B6db195cbda960abcbab8a78e8e362128 . . . . . -_:B0d117f18ffd33da0f54eb7621114b395 "Terry Hayamizu" . -_:B0d117f18ffd33da0f54eb7621114b395 "Terry.Hayamizu@jax.org" . - "http://purl.obolibrary.org/obo/ma.owl" . "http://purl.obolibrary.org/obo/ma.obo" . -_:B57f0d16f0d8dd6b65ef7531723f3733e "Leigh Carmody" . -_:B57f0d16f0d8dd6b65ef7531723f3733e "Leigh.Carmody@jax.org" . - "http://purl.obolibrary.org/obo/maxo.owl" . - "http://purl.obolibrary.org/obo/maxo.obo" . + "http://purl.obolibrary.org/obo/ma.owl" . + "MAMO" . + "orphaned" . + "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features." . + "Mathematical modeling ontology" . + . + "simulation" . + "http://sourceforge.net/p/mamo-ontology/tickets/" . + "http://purl.obolibrary.org/obo/mamo.owl" . + . + . + "http://purl.obolibrary.org/obo/mamo.owl" . + "inactive" . + "Multiple alignment" . + "chemistry and biochemistry" . + _:B700646292c44196d50fe53db8e9ca68e . + . + "inactive" . + "Minimal anatomical terminology" . + "anatomy and development" . + _:B5b6ee77ab08b66a8e630606907da2270 . + "MAXO" . + "active" . + . + . + . + . + . + . + . + . + . + "The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations." . + "Medical Action Ontology" . + . + "health" . + "https://github.com/monarch-initiative/MAxO/issues" . + "http://purl.obolibrary.org/obo/maxo.owl" . + _:Bf3dbae828913179f1a689f352c57b4e4 . + . + . + . + . + . + . + . "http://purl.obolibrary.org/obo/maxo.json" . - "http://purl.obolibrary.org/obo/maxo/maxo-base.owl" . - "http://purl.obolibrary.org/obo/maxo/maxo-base.obo" . + "http://purl.obolibrary.org/obo/maxo.obo" . + "http://purl.obolibrary.org/obo/maxo.owl" . "http://purl.obolibrary.org/obo/maxo/maxo-base.json" . + "http://purl.obolibrary.org/obo/maxo/maxo-base.obo" . + "http://purl.obolibrary.org/obo/maxo/maxo-base.owl" . "MCO" . "active" . . @@ -2329,64 +2667,12 @@ _:B57f0d16f0d8dd6b65ef7531723f3733e "Leigh.Carm "investigations" . "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology/issues" . "http://purl.obolibrary.org/obo/mco.owl" . - _:B4eaaa19cdd4afd2b246caf1a52fe270f . + _:Bdd869ee551d4ec6a917c105b19d61e75 . . . . - "MICRO" . - "inactive" . - "An ontology of prokaryotic phenotypic and metabolic characters" . - "Ontology of Prokaryotic Phenotypic and Metabolic Characters" . - . - "phenotype" . - "https://github.com/carrineblank/MicrO/issues" . - "http://purl.obolibrary.org/obo/micro.owl" . - _:Bac9ebbc4d5964be3d854aa2171c9cfbc . - . - . - "OMIT" . - "active" . - "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain" . - "Ontology for MIRNA Target" . - . - "chemistry and biochemistry" . - "https://github.com/OmniSearch/omit/issues" . - "http://purl.obolibrary.org/obo/omit.owl" . - _:Bf72cee3211d2de457eb976b31e3b5c67 . - . - . - . - "OMP" . - "active" . - "An ontology of phenotypes covering microbes" . - "Ontology of Microbial Phenotypes" . - . - . - "phenotype" . - "https://github.com/microbialphenotypes/OMP-ontology/issues" . - "http://purl.obolibrary.org/obo/omp.owl" . - _:B007085f5f041ac0194f6bc5577e4d5dd . - . - . - . - "ZECO" . - "active" . - . - "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN" . - "Zebrafish Experimental Conditions Ontology" . - . - "environment" . - "https://github.com/ybradford/zebrafish-experimental-conditions-ontology/issues" . - "http://purl.obolibrary.org/obo/zeco.owl" . - _:B109eb1901ab3365189d65806ea41c164 . - . - . - . - . -_:B4eaaa19cdd4afd2b246caf1a52fe270f "Citlalli Mejía-Almonte" . -_:B4eaaa19cdd4afd2b246caf1a52fe270f "citlalli.mejiaalmonte@gmail.com" . - "http://purl.obolibrary.org/obo/mco.owl" . "http://purl.obolibrary.org/obo/mco.obo" . + "http://purl.obolibrary.org/obo/mco.owl" . "MCRO" . "active" . . @@ -2398,25 +2684,9 @@ _:B4eaaa19cdd4afd2b246caf1a52fe270f "citlalli.m "information technology" . "https://github.com/UTHealth-Ontology/MCRO/issues" . "http://purl.obolibrary.org/obo/mcro.owl" . - _:Bbd9be43fd7d8c1b9231d3a65d37f4a58 . + _:B530a5625fd64a12ec55afe4b9506242f . . . - "SWO" . - "active" . - "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community." . - "Software ontology" . - . - . - "information technology" . - "https://github.com/allysonlister/swo/issues" . - "http://purl.obolibrary.org/obo/swo.owl" . - _:Befab4647ed3d271bac9fcf842f5a0077 . - . - . - . - "Toward a standard formal semantic representation of the model card report" . -_:Bbd9be43fd7d8c1b9231d3a65d37f4a58 "Tuan Amith" . -_:Bbd9be43fd7d8c1b9231d3a65d37f4a58 "muamith@utmb.edu" . "http://purl.obolibrary.org/obo/mcro.owl" . "MF" . "active" . @@ -2426,12 +2696,32 @@ _:Bbd9be43fd7d8c1b9231d3a65d37f4a58 "muamith@ut "health" . "https://github.com/jannahastings/mental-functioning-ontology/issues" . "http://purl.obolibrary.org/obo/mf.owl" . - _:B13901dc152f06c48b54766ce7cb99794 . + _:B1632f9d4f10caa66975fbc362f532af0 . . . -_:B13901dc152f06c48b54766ce7cb99794 "Janna Hastings" . -_:B13901dc152f06c48b54766ce7cb99794 "janna.hastings@gmail.com" . "http://purl.obolibrary.org/obo/mf.owl" . + . + "MFMO" . + "inactive" . + . + "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors." . + "Mammalian Feeding Muscle Ontology" . + . + "anatomy and development" . + "https://github.com/RDruzinsky/feedontology/issues" . + "http://purl.obolibrary.org/obo/mfmo.owl" . + _:Ba9f75ce476d73d2b1051f40ff5eb4c96 . + . + . + "http://purl.obolibrary.org/obo/mfmo.owl" . + . + "inactive" . + "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes." . + "Medaka fish anatomy and development" . + "anatomy and development" . + _:B8e07b0f0439ad091058e69da937e5773 . + . + "http://purl.obolibrary.org/obo/mfo.owl" . "MFOEM" . "active" . "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings." . @@ -2440,11 +2730,9 @@ _:B13901dc152f06c48b54766ce7cb99794 "janna.hast "health" . "https://github.com/jannahastings/emotion-ontology/issues" . "http://purl.obolibrary.org/obo/mfoem.owl" . - _:B5d7c522543d311a3f600dac189a8154a . + _:Be8d3bbf8160d5beca71e68089234d2a2 . . . -_:B5d7c522543d311a3f600dac189a8154a "Janna Hastings" . -_:B5d7c522543d311a3f600dac189a8154a "janna.hastings@gmail.com" . "http://purl.obolibrary.org/obo/mfoem.owl" . "MFOMD" . "active" . @@ -2454,11 +2742,9 @@ _:B5d7c522543d311a3f600dac189a8154a "janna.hast "health" . "https://github.com/jannahastings/mental-functioning-ontology/issues" . "http://purl.obolibrary.org/obo/mfomd.owl" . - _:Bdc8c9e28a641888e0cd49b11a80c8f02 . + _:B3954d2c25b76a20849f96cf717d86514 . . . -_:Bdc8c9e28a641888e0cd49b11a80c8f02 "Janna Hastings" . -_:Bdc8c9e28a641888e0cd49b11a80c8f02 "janna.hastings@gmail.com" . "http://purl.obolibrary.org/obo/mfomd.owl" . "MI" . "active" . @@ -2468,15 +2754,13 @@ _:Bdc8c9e28a641888e0cd49b11a80c8f02 "janna.hast "investigations" . "https://github.com/HUPO-PSI/psi-mi-CV/issues" . "http://purl.obolibrary.org/obo/mi.owl" . - _:Bc8f4b99310e1ae8db55c8b4c740e4220 . + _:B6997ee52001c0824928c3a08324314e4 . . . . . -_:Bc8f4b99310e1ae8db55c8b4c740e4220 "Luana Licata" . -_:Bc8f4b99310e1ae8db55c8b4c740e4220 "luana.licata@gmail.com" . - "http://purl.obolibrary.org/obo/mi.owl" . "http://purl.obolibrary.org/obo/mi.obo" . + "http://purl.obolibrary.org/obo/mi.owl" . "MIAPA" . "active" . "An application ontology to formalize annotation of phylogenetic data." . @@ -2487,13 +2771,42 @@ _:Bc8f4b99310e1ae8db55c8b4c740e4220 "luana.lica "https://github.com/evoinfo/miapa/issues" . "http://groups.google.com/group/miapa-discuss" . "http://purl.obolibrary.org/obo/miapa.owl" . - _:Bfaedeb4022cc70972215019957eed7cb . + _:B7f19c533d636733e115a853d3c6d60e5 . . . - "Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)" . -_:Bfaedeb4022cc70972215019957eed7cb "Hilmar Lapp" . -_:Bfaedeb4022cc70972215019957eed7cb "hilmar.lapp@duke.edu" . "http://purl.obolibrary.org/obo/miapa.owl" . + "MICRO" . + "inactive" . + "An ontology of prokaryotic phenotypic and metabolic characters" . + "Ontology of Prokaryotic Phenotypic and Metabolic Characters" . + . + "phenotype" . + "https://github.com/carrineblank/MicrO/issues" . + "http://purl.obolibrary.org/obo/micro.owl" . + _:B730d079144ebe92c6caf8ba79a3a9f81 . + . + . + "http://purl.obolibrary.org/obo/micro.owl" . + "inactive" . + "An application ontology for use with miRNA databases." . + "microRNA Ontology" . + . + "chemistry and biochemistry" . + _:Bba9757ef85bd486ffc8a674b5d33cd1b . + . + . + "http://purl.obolibrary.org/obo/mirnao.owl" . + . + "inactive" . + "Application ontology for entities related to insecticide resistance in mosquitos" . + "Mosquito insecticide resistance" . + "environment" . + "http://purl.obolibrary.org/obo/miro.owl" . + _:B5aef741c4a0639b3bcc91c24c4369046 . + . + . + "http://purl.obolibrary.org/obo/miro.obo" . + "http://purl.obolibrary.org/obo/miro.owl" . "MMO" . "active" . "A representation of the variety of methods used to make clinical and phenotype measurements. " . @@ -2505,17 +2818,13 @@ _:Bfaedeb4022cc70972215019957eed7cb "hilmar.lap "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues" . . "http://purl.obolibrary.org/obo/mmo.owl" . - _:Bbe70fc5725439452ea7aa13c7530b697 . + _:B24d8d9b6a31625db9d87dd30230eb51f . . . . . - "RGD Ontology Browser" . - "RGD" . -_:Bbe70fc5725439452ea7aa13c7530b697 "Jennifer Smith" . -_:Bbe70fc5725439452ea7aa13c7530b697 "jrsmith@mcw.edu" . - "http://purl.obolibrary.org/obo/mmo.owl" . "http://purl.obolibrary.org/obo/mmo.obo" . + "http://purl.obolibrary.org/obo/mmo.owl" . "MmusDv" . "active" . "Life cycle stages for Mus Musculus" . @@ -2524,15 +2833,22 @@ _:Bbe70fc5725439452ea7aa13c7530b697 "jrsmith@mc "anatomy and development" . "https://github.com/obophenotype/developmental-stage-ontologies/issues" . "http://purl.obolibrary.org/obo/mmusdv.owl" . - _:B59d1eca14c0bf21f5cd8d8eeaa48bc64 . + _:B097fb2fc72fc234c1dbd998cf1588c7d . . . . . -_:B59d1eca14c0bf21f5cd8d8eeaa48bc64 "Frédéric Bastian" . -_:B59d1eca14c0bf21f5cd8d8eeaa48bc64 "frederic.bastian@unil.ch" . - "http://purl.obolibrary.org/obo/mmusdv.owl" . "http://purl.obolibrary.org/obo/mmusdv.obo" . + "http://purl.obolibrary.org/obo/mmusdv.owl" . + "inactive" . + "A standardized description of a microarray experiment in support of MAGE v.1." . + "Microarray experimental conditions" . + "investigations" . + _:Bd09e82cf8582f1e4b9dc498efc351c4b . + . + . + . + "http://purl.obolibrary.org/obo/mo.owl" . "MOD" . "active" . "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications" . @@ -2542,22 +2858,19 @@ _:B59d1eca14c0bf21f5cd8d8eeaa48bc64 "frederic.b "chemistry and biochemistry" . "https://github.com/HUPO-PSI/psi-mod-CV/issues" . "http://purl.obolibrary.org/obo/mod.owl" . - _:B1b9b8706b39270d91fdf228a4f82f4a3 . + _:Bf5a2420aa760dbe7708ba3996b7233bc . . . . - "The PSI-MOD community standard for representation of protein modification data" . -_:B1b9b8706b39270d91fdf228a4f82f4a3 "Pierre-Alain Binz" . -_:B1b9b8706b39270d91fdf228a4f82f4a3 "pierre-alain.binz@chuv.ch" . - "PSI-MOD Ontology, OWL format" . - "PSI-MOD.owl" . - "http://purl.obolibrary.org/obo/mod.owl" . "PSI-MOD Ontology, OBO format" . "PSI-MOD.obo" . "http://purl.obolibrary.org/obo/mod.obo" . + "PSI-MOD Ontology, OWL format" . + "PSI-MOD.owl" . + "http://purl.obolibrary.org/obo/mod.owl" . + . "MONDO" . "active" . - . "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology." . "Mondo Disease Ontology" . . @@ -2568,31 +2881,25 @@ _:B1b9b8706b39270d91fdf228a4f82f4a3 "pierre-ala "https://groups.google.com/group/mondo-users" . . "http://purl.obolibrary.org/obo/mondo.owl" . - _:B5240044a29fd220d3e0efb71e7a39bb9 . + _:B0725b0fcc9d5230f5cfb10eb261ccda0 . . . . . . . - "Mondo: Integrating Disease Terminology Across Communities" . - "Mondo: Unifying diseases for the world, by the world" . - "Monarch Initiative Disease Browser" . - "Monarch" . -_:B5240044a29fd220d3e0efb71e7a39bb9 "Sabrina Toro" . -_:B5240044a29fd220d3e0efb71e7a39bb9 "Sabrina@tislab.org" . - "Complete ontology with merged imports." . - "Mondo OWL edition" . - "owl-rdf/xml" . - "http://purl.obolibrary.org/obo/mondo.owl" . - "OBO serialization of mondo.owl." . - "Mondo OBO Format edition" . - "obo" . - "http://purl.obolibrary.org/obo/mondo.obo" . "Obographs serialization of mondo.owl." . "Mondo JSON edition" . "obo" . "http://purl.obolibrary.org/obo/mondo.json" . + "OBO serialization of mondo.owl." . + "Mondo OBO Format edition" . + "obo" . + "http://purl.obolibrary.org/obo/mondo.obo" . + "Complete ontology with merged imports." . + "Mondo OWL edition" . + "owl-rdf/xml" . + "http://purl.obolibrary.org/obo/mondo.owl" . "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" . "Mondo Base Release" . "owl" . @@ -2610,56 +2917,62 @@ _:B5240044a29fd220d3e0efb71e7a39bb9 "Sabrina@ti "https://github.com/rsc-ontologies/rxno/issues" . "chemistry-ontologies@googlegroups.com" . "http://purl.obolibrary.org/obo/mop.owl" . - _:B0d239f39e3c1b04a9f110400f570386e . + _:Bb3c5658456204ffbb0e162515b5f9be3 . . . -_:B0d239f39e3c1b04a9f110400f570386e "Colin Batchelor" . -_:B0d239f39e3c1b04a9f110400f570386e "batchelorc@rsc.org" . "Molecular Process Ontology" . "http://purl.obolibrary.org/obo/mop.owl" . - "Mammalia" . - "Mammalian" . - "Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery" . - "The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data" . - "Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens" . - "MGI MP Browser" . - "MGI" . - "RGD MP Browser" . - "RGD" . - "Monarch Phenotype Page" . - "Monarch" . -_:B39cfa60d816694cfb810649bd19ba8df "Sue Bello" . -_:B39cfa60d816694cfb810649bd19ba8df "pheno@jax.org" . - "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies." . - "MP (OWL edition)" . - "http://purl.obolibrary.org/obo/mp.owl" . - . - "A direct translation of the MP (OWL edition) into OBO format." . - "MP (OBO edition)" . - "http://purl.obolibrary.org/obo/mp.obo" . - . - "For a description of the format see https://github.com/geneontology/obographs." . - "MP (obographs JSON edition)" . - "http://purl.obolibrary.org/obo/mp.json" . - . - "The main ontology plus axioms connecting to select external ontologies, excluding axioms from the the external ontologies themselves." . - "MP Base Module" . - "http://purl.obolibrary.org/obo/mp/mp-base.owl" . - . - "MPATH" . - "active" . - . - "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes" . - "Mouse pathology ontology" . - . - "health" . - "https://github.com/PaulNSchofield/mpath/issues" . + . + "MP" . + "active" . + "Standard terms for annotating mammalian phenotypic data." . + "Mammalian Phenotype Ontology" . + . + . + . + . + "phenotype" . + "https://github.com/mgijax/mammalian-phenotype-ontology/issues" . + "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" . + . + . + . + "http://purl.obolibrary.org/obo/mp.owl" . + _:Bce05af490ce79bdee32b5968680fbe66 . + . + . + . + . + . + . + "For a description of the format see https://github.com/geneontology/obographs." . + "MP (obographs JSON edition)" . + "http://purl.obolibrary.org/obo/mp.json" . + . + "A direct translation of the MP (OWL edition) into OBO format." . + "MP (OBO edition)" . + "http://purl.obolibrary.org/obo/mp.obo" . + . + "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies." . + "MP (OWL edition)" . + "http://purl.obolibrary.org/obo/mp.owl" . + . + "The main ontology plus axioms connecting to select external ontologies, excluding axioms from the the external ontologies themselves." . + "MP Base Module" . + "http://purl.obolibrary.org/obo/mp/mp-base.owl" . + . + . + "MPATH" . + "active" . + "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes" . + "Mouse pathology ontology" . + . + "health" . + "https://github.com/PaulNSchofield/mpath/issues" . "http://purl.obolibrary.org/obo/mpath.owl" . - _:Bdcd87b9acb3df0911dc813ac127cfa5f . + _:Bb56dab2e4edc12636f14f05bc373674f . . . -_:Bdcd87b9acb3df0911dc813ac127cfa5f "Paul Schofield" . -_:Bdcd87b9acb3df0911dc813ac127cfa5f "pns12@hermes.cam.ac.uk" . "http://purl.obolibrary.org/obo/mpath.owl" . "MPIO" . "active" . @@ -2669,11 +2982,9 @@ _:Bdcd87b9acb3df0911dc813ac127cfa5f "pns12@herm "health" . "https://github.com/MPIO-Developers/MPIO/issues" . "http://purl.obolibrary.org/obo/mpio.owl" . - _:Bfda4882b5349c865770a49f4172b1e10 . + _:Bd619e23c61086c5f9db892811bfb4bed . . . -_:Bfda4882b5349c865770a49f4172b1e10 "Mathias Brochhausen" . -_:Bfda4882b5349c865770a49f4172b1e10 "mbrochhausen@uams.edu" . "http://purl.obolibrary.org/obo/mpio.owl" . "MRO" . "active" . @@ -2683,11 +2994,9 @@ _:Bfda4882b5349c865770a49f4172b1e10 "mbrochhaus "chemistry and biochemistry" . "https://github.com/IEDB/MRO/issues" . "http://purl.obolibrary.org/obo/mro.owl" . - _:Bbbf38a0776248d4a5f5578719033dafa . + _:B012e6c423ab6aef5d5a16bbf86f3c2a8 . . . -_:Bbbf38a0776248d4a5f5578719033dafa "Bjoern Peters" . -_:Bbbf38a0776248d4a5f5578719033dafa "bpeters@lji.org" . "http://purl.obolibrary.org/obo/mro.owl" . "MS" . "active" . @@ -2701,45 +3010,73 @@ _:Bbbf38a0776248d4a5f5578719033dafa "bpeters@lj "https://github.com/HUPO-PSI/psi-ms-CV/issues" . "psidev-ms-vocab@lists.sourceforge.net" . "http://purl.obolibrary.org/obo/ms.owl" . - _:B030c544a823af4fcb0f3c4d1a49810c8 . + _:Bb0dd9ee38f4ea7f163f81a1a9262541d . . . . . - "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary." . -_:B030c544a823af4fcb0f3c4d1a49810c8 "Joshua Klein" . -_:B030c544a823af4fcb0f3c4d1a49810c8 "joshua.adam.klein@gmail.com" . "http://purl.obolibrary.org/obo/ms.obo" . "http://purl.obolibrary.org/obo/ms.owl" . - "Analyzing gene expression data in mice with the Neuro Behavior Ontology" . - "BioPortal Ontology Browser" . - "BioPortal" . -_:B146e00bc160f27c07821f595836e8f2a "George Gkoutos" . -_:B146e00bc160f27c07821f595836e8f2a "g.gkoutos@bham.ac.uk" . + "NBO" . + "active" . + "An ontology of human and animal behaviours and behavioural phenotypes" . + "Neuro Behavior Ontology" . + . + . + "biological systems" . + "https://github.com/obo-behavior/behavior-ontology/issues" . + . + "http://purl.obolibrary.org/obo/nbo.owl" . + _:B0bbcf9fe959889e175419863335b44ee . + . + . "http://purl.obolibrary.org/obo/nbo.owl" . - "NCBI Taxonomy Browser" . - "NCBI" . -_:B6432ab17c1aaef2668b463204866f46e "Frederic Bastian" . -_:B6432ab17c1aaef2668b463204866f46e "frederic.bastian@unil.ch" . - "Main release" . - "http://purl.obolibrary.org/obo/ncbitaxon.owl" . - "OBO Format version of Main release" . - "http://purl.obolibrary.org/obo/ncbitaxon.obo" . + "NCBITaxon" . + "active" . + "An ontology representation of the NCBI organismal taxonomy" . + "NCBI organismal classification" . + . + "organisms" . + "https://github.com/obophenotype/ncbitaxon/issues" . + . + "http://purl.obolibrary.org/obo/ncbitaxon.owl" . + _:B91dea25591ada0a8a3afb24a46eb297a . + . + . + . + . + . + . + . "OBOGraphs JSON version of Main release" . "http://purl.obolibrary.org/obo/ncbitaxon.json" . - "taxslim" . - "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl" . - . + "OBO Format version of Main release" . + "http://purl.obolibrary.org/obo/ncbitaxon.obo" . + "Main release" . + "http://purl.obolibrary.org/obo/ncbitaxon.owl" . "taxslim disjointness axioms" . "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl" . . -_:B7984f1594cdf033cd123916310ffd3e7 "None" . -_:B7984f1594cdf033cd123916310ffd3e7 "noreply@example.com" . + "taxslim" . + "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl" . + . + "NCIT" . + "active" . + "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental." . + "NCI Thesaurus OBO Edition" . + . + "health" . + "https://github.com/ncit-obo-org/ncit-obo-edition/issues" . + "http://purl.obolibrary.org/obo/ncit.owl" . + _:B5d508c8871650ede0b0069e243307929 . + . + . + . + "NCIt OBO Edition OBO format" . + "http://purl.obolibrary.org/obo/ncit.obo" . "A direct transformation of the standard NCIt content using OBO-style term and ontology IRIs and annotation properties." . "NCIt OBO Edition OWL format" . "http://purl.obolibrary.org/obo/ncit.owl" . - "NCIt OBO Edition OBO format" . - "http://purl.obolibrary.org/obo/ncit.obo" . "NCRO" . "active" . "An ontology for non-coding RNA, both of biological origin, and engineered." . @@ -2749,11 +3086,9 @@ _:B7984f1594cdf033cd123916310ffd3e7 "noreply@ex "https://github.com/OmniSearch/ncro/issues" . "ncro-devel@googlegroups.com, ncro-discuss@googlegroups.com" . "http://purl.obolibrary.org/obo/ncro.owl" . - _:B2ca1f235b7c0bfe646f238f243aaabd8 . + _:B4cd9d0a5e357f65777f303dbbfbc6be6 . . . -_:B2ca1f235b7c0bfe646f238f243aaabd8 "Jingshan Huang" . -_:B2ca1f235b7c0bfe646f238f243aaabd8 "huang@southalabama.edu" . "NCRO development version" . "http://purl.obolibrary.org/obo/ncro/dev/ncro.owl" . "NGBO" . @@ -2764,12 +3099,35 @@ _:B2ca1f235b7c0bfe646f238f243aaabd8 "huang@sout "investigations" . "https://github.com/Dalalghamdi/NGBO/issues" . "http://purl.obolibrary.org/obo/ngbo.owl" . - _:Befad34d9f26b1cd27e93d269f856481c . + _:Bd19185a37969c7bfd10e65e1d67e5ab8 . . . -_:Befad34d9f26b1cd27e93d269f856481c "Dalia Alghamdi" . -_:Befad34d9f26b1cd27e93d269f856481c "dal.alghamdi92@gmail.com" . "http://purl.obolibrary.org/obo/ngbo.owl" . + "inactive" . + "Neuronal cell types" . + "NIF Cell" . + "anatomy and development" . + _:B009e3f14fc766d25b1448ec4596ed14c . + . + "inactive" . + "NIF Dysfunction" . + "health" . + _:Be9bc2b0a6adfdbd71885fd4bf035f8a8 . + . + "inactive" . + "NIF Gross Anatomy" . + "anatomy and development" . + _:B8f94dbf74746f4c4342fafb910021a3f . + . + "inactive" . + "Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation." . + "NMR-instrument specific component of metabolomics investigations" . + "investigations" . + _:B61cb39118fde0a9c308931e618b2a16c . + . + . + . + "http://purl.obolibrary.org/obo/nmr.owl" . "NOMEN" . "active" . "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature." . @@ -2780,12 +3138,9 @@ _:Befad34d9f26b1cd27e93d269f856481c "dal.algham "https://github.com/SpeciesFileGroup/nomen/issues" . "https://groups.google.com/forum/#!forum/nomen-discuss" . "http://purl.obolibrary.org/obo/nomen.owl" . - _:B099f2ea53c5db2400ea5aca86387027b . + _:B96a975061d1c7ce2c42b3d274cfcf51d . . . - "NSF ABI-1356381" . -_:B099f2ea53c5db2400ea5aca86387027b "Matt Yoder" . -_:B099f2ea53c5db2400ea5aca86387027b "diapriid@gmail.com" . "core ontology" . "NOMEN" . . @@ -2798,11 +3153,9 @@ _:B099f2ea53c5db2400ea5aca86387027b "diapriid@g "health" . "https://github.com/OAE-ontology/OAE/issues" . "http://purl.obolibrary.org/obo/oae.owl" . - _:Bc2a414c1ffffacd545f769e728b05601 . + _:Bce4bedf6d29f832ed450a5e566f8cd69 . . . -_:Bc2a414c1ffffacd545f769e728b05601 "Yongqunh He" . -_:Bc2a414c1ffffacd545f769e728b05601 "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/oae.owl" . "OARCS" . "active" . @@ -2812,17 +3165,27 @@ _:Bc2a414c1ffffacd545f769e728b05601 "yongqunh@m "anatomy and development" . "https://github.com/aszool/oarcs/issues" . "http://purl.obolibrary.org/obo/oarcs.owl" . - _:Bdc7dcc9eb691f0f75aee9449fade5607 . + _:Bfbb108e0321731f8113e4116341efd32 . . . -_:Bdc7dcc9eb691f0f75aee9449fade5607 "Matt Yoder" . -_:Bdc7dcc9eb691f0f75aee9449fade5607 "mjyoder@illinois.edu" . "http://purl.obolibrary.org/obo/oarcs.owl" . - "The Ontology of Biological Attributes (OBA) - computational traits for the life sciences" . -_:B044781272e4863f3d8413836a440fe6d "Chris Mungall" . -_:B044781272e4863f3d8413836a440fe6d "cjmungall@lbl.gov" . - "http://purl.obolibrary.org/obo/oba.owl" . + "OBA" . + "active" . + "A collection of biological attributes (traits) covering all kingdoms of life." . + "Ontology of Biological Attributes" . + . + . + "phenotype" . + "https://github.com/obophenotype/bio-attribute-ontology/issues" . + "http://purl.obolibrary.org/obo/oba.owl" . + _:B18d4cfe50d31a5f5cbde6f9eb15bb6e1 . + . + . + . + . + . "http://purl.obolibrary.org/obo/oba.obo" . + "http://purl.obolibrary.org/obo/oba.owl" . "http://purl.obolibrary.org/obo/oba/subsets/oba-basic.obo" . "OBCS" . "active" . @@ -2832,29 +3195,39 @@ _:B044781272e4863f3d8413836a440fe6d "cjmungall@ "information technology" . "https://github.com/obcs/obcs/issues" . "http://purl.obolibrary.org/obo/obcs.owl" . - _:B0ebfc5f61758ff21e535d3a2e09ecf95 . + _:B000d4b229c9e11032a3e700ac0e81738 . . . -_:B0ebfc5f61758ff21e535d3a2e09ecf95 "Jie Zheng" . -_:B0ebfc5f61758ff21e535d3a2e09ecf95 "jiezhen@med.umich.edu" . "http://purl.obolibrary.org/obo/obcs.owl" . - "The Ontology for Biomedical Investigations" . - "BioPortal Browser" . - "BioPortal" . -_:Bf9b5bf7a1951fee91a51e816490154ca "Bjoern Peters" . -_:Bf9b5bf7a1951fee91a51e816490154ca "bpeters@lji.org" . - "The full version of OBI in OWL format" . - "OBI" . - "http://purl.obolibrary.org/obo/obi.owl" . + "OBI" . + "active" . + "An integrated ontology for the description of life-science and clinical investigations" . + "Ontology for Biomedical Investigations" . + . + . + "investigations" . + "http://purl.obolibrary.org/obo/obi/tracker" . + "http://groups.google.com/group/obi-users" . + . + "http://purl.obolibrary.org/obo/obi.owl" . + _:B7d549d39dde9a668cd9e519be1ca45c9 . + . + . + . + . + . "The OBO-format version of OBI" . "OBI in OBO" . "http://purl.obolibrary.org/obo/obi.obo" . - "A collection of important high-level terms and their relations from OBI and other ontologies" . - "OBI Core" . - "http://purl.obolibrary.org/obo/obi/obi_core.owl" . + "The full version of OBI in OWL format" . + "OBI" . + "http://purl.obolibrary.org/obo/obi.owl" . "Base module for OBI" . "OBI Base module" . "http://purl.obolibrary.org/obo/obi/obi-base.owl" . + "A collection of important high-level terms and their relations from OBI and other ontologies" . + "OBI Core" . + "http://purl.obolibrary.org/obo/obi/obi_core.owl" . "OBIB" . "active" . "An ontology built for annotation and modeling of biobank repository and biobanking administration" . @@ -2863,12 +3236,15 @@ _:Bf9b5bf7a1951fee91a51e816490154ca "bpeters@lj "investigations" . "https://github.com/biobanking/biobanking/issues" . "http://purl.obolibrary.org/obo/obib.owl" . - _:B2be66f78f70a7a7a97dc66e148702307 . + _:B5019917b9fd47409993d53dd5a2f2abc . . . -_:B2be66f78f70a7a7a97dc66e148702307 "Justin Whorton" . -_:B2be66f78f70a7a7a97dc66e148702307 "jmwhorton@uams.edu" . "http://purl.obolibrary.org/obo/obib.owl" . + "inactive" . + "OBO relationship types (legacy)" . + "upper" . + _:B2e49b9abba4dcd7d09d6025712aceee3 . + . "OCCO" . "active" . "An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau of Labor Statistics Standard Occupational Classification (US SOC), the International Standard Classification of Occupations (ISCO), the UK National Statistics Standard Occupational Classification (UK SOC), and the European Skills, Competences, Qualifications and Occupations (ESCO) of the European Union." . @@ -2878,13 +3254,9 @@ _:B2be66f78f70a7a7a97dc66e148702307 "jmwhorton@ "https://github.com/Occupation-Ontology/OccO/issues" . . "http://purl.obolibrary.org/obo/occo.owl" . - _:Bde1bf4535915017eef1d03c5558d38b2 . + _:Bba1be3cf99f7183013592a73f41ce5dd . . . - "BioPortal Ontology Browser" . - "BioPortal" . -_:Bde1bf4535915017eef1d03c5558d38b2 "Jie Zheng" . -_:Bde1bf4535915017eef1d03c5558d38b2 "zhengj2007@gmail.com" . "http://purl.obolibrary.org/obo/occo.owl" . "OGG" . "active" . @@ -2894,17 +3266,46 @@ _:Bde1bf4535915017eef1d03c5558d38b2 "zhengj2007 "biological systems" . "https://bitbucket.org/hegroup/ogg/issues/" . "http://purl.obolibrary.org/obo/ogg.owl" . - _:B8bd914781ef903c8184bacbb4f2e0258 . + _:Bd2752020699b32610259ff592b5620c1 . . . -_:B8bd914781ef903c8184bacbb4f2e0258 "Yongqun Oliver He" . -_:B8bd914781ef903c8184bacbb4f2e0258 "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ogg.owl" . - "Toward an ontological treatment of disease and diagnosis" . - "Biomarkers in the Ontology for General Medical Science" . -_:Bee1a01f0c7c5949e452b9f208307fe8f "Brian Aevermann" . -_:Bee1a01f0c7c5949e452b9f208307fe8f "baeverma@jcvi.org" . + "inactive" . + "An ontology that formalizes the genomic element by defining an upper class genetic interval" . + "Ontology for genetic interval" . + "chemistry and biochemistry" . + "https://code.google.com/p/ontology-for-genetic-interval/issues/list" . + _:B0e185b355557887826a6e3178218beea . + . + . + "http://purl.obolibrary.org/obo/ogi.owl" . + . + "OGMS" . + "active" . + "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities" . + "Ontology for General Medical Science" . + . + . + . + "health" . + "https://github.com/OGMS/ogms/issues" . + "http://purl.obolibrary.org/obo/ogms.owl" . + _:B4e1691988c48cf20ee16e59a81032779 . + . + . "http://purl.obolibrary.org/obo/ogms.owl" . + "OGSF" . + "inactive" . + "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process." . + "Ontology of Genetic Susceptibility Factor" . + . + "investigations" . + "https://github.com/linikujp/OGSF/issues" . + "http://purl.obolibrary.org/obo/ogsf.owl" . + _:Bf26d64c16d416b36bd36623d09b0ad8f . + . + . + "http://purl.obolibrary.org/obo/ogsf.owl" . "OHD" . "active" . "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies." . @@ -2914,12 +3315,9 @@ _:Bee1a01f0c7c5949e452b9f208307fe8f "baeverma@j "health" . "https://github.com/oral-health-and-disease-ontologies/ohd-ontology/issues" . "http://purl.obolibrary.org/obo/ohd.owl" . - _:B8d7e9cc0917da2581130c7193933f0d3 . + _:B84d016f9dbcedbacc867693dcba1c9fd . . . - "Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology" . -_:B8d7e9cc0917da2581130c7193933f0d3 "Bill Duncan" . -_:B8d7e9cc0917da2581130c7193933f0d3 "wdduncan@gmail.com" . "Oral Health and Disease Ontology" . "http://purl.obolibrary.org/obo/ohd.owl" . "OHMI" . @@ -2931,11 +3329,9 @@ _:B8d7e9cc0917da2581130c7193933f0d3 "wdduncan@g "https://github.com/ohmi-ontology/ohmi/issues" . "http://groups.google.com/group/ohmi-discuss" . "http://purl.obolibrary.org/obo/ohmi.owl" . - _:Bf04491edd6aa323acc8180326137b48e . + _:Bc8480acab56bba6a283677dbbbd6f06a . . . -_:Bf04491edd6aa323acc8180326137b48e "Yongqun Oliver He" . -_:Bf04491edd6aa323acc8180326137b48e "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ohmi.owl" . "OHPI" . "active" . @@ -2947,27 +3343,88 @@ _:Bf04491edd6aa323acc8180326137b48e "yongqunh@m "https://github.com/OHPI/ohpi/issues" . "http://groups.google.com/group/ohpi-discuss" . "http://purl.obolibrary.org/obo/ohpi.owl" . - _:Bbb02ab0e98ea22524bb7d4ccbd5042c9 . + _:Bd554f0cacb3f3b61a2464211c2927324 . . . - "Victors: a web-based knowledge base of virulence factors in human and animal pathogens" . -_:Bbb02ab0e98ea22524bb7d4ccbd5042c9 "Edison Ong" . -_:Bbb02ab0e98ea22524bb7d4ccbd5042c9 "edong@umich.edu" . "http://purl.obolibrary.org/obo/ohpi.owl" . -_:Bf72cee3211d2de457eb976b31e3b5c67 "Jingshan Huang" . -_:Bf72cee3211d2de457eb976b31e3b5c67 "huang@southalabama.edu" . + "OlatDv" . + "inactive" . + "Life cycle stages for Medaka" . + "Medaka Developmental Stages" . + . + "anatomy and development" . + "https://github.com/obophenotype/developmental-stage-ontologies/issues" . + "http://purl.obolibrary.org/obo/olatdv.owl" . + _:B19c436b37ea8f79223861ca79e6ae7b3 . + . + . + . + . + "http://purl.obolibrary.org/obo/olatdv.obo" . + "http://purl.obolibrary.org/obo/olatdv.owl" . + "inactive" . + "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)" . + "Ontologized MIABIS" . + . + "health" . + "https://github.com/OMIABIS/omiabis-dev/issues" . + _:B7fdfd7e07c391dc3f606db759a354ec2 . + . + . + "http://purl.obolibrary.org/obo/omiabis.owl" . + "OMIT" . + "active" . + "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain" . + "Ontology for MIRNA Target" . + . + "chemistry and biochemistry" . + "https://github.com/OmniSearch/omit/issues" . + "http://purl.obolibrary.org/obo/omit.owl" . + _:B002a8a34ae72a076520b9fc13f279e69 . + . + . + . "http://purl.obolibrary.org/obo/omit.owl" . -_:B9d6c6fffb8968fe3027259bcb93d7c9c "Chris Mungall" . -_:B9d6c6fffb8968fe3027259bcb93d7c9c "cjmungall@lbl.gov" . - "http://purl.obolibrary.org/obo/omo.owl" . - "An ontology for microbial phenotypes" . -_:B007085f5f041ac0194f6bc5577e4d5dd "James C. Hu" . -_:B007085f5f041ac0194f6bc5577e4d5dd "jimhu@tamu.edu" . - "http://purl.obolibrary.org/obo/omp.owl" . - "http://purl.obolibrary.org/obo/omp.obo" . - "The ontology of medically related social entities: recent developments" . -_:Bf77669ed844ce14e32d8c71e40df850a "Bill Hogan" . -_:Bf77669ed844ce14e32d8c71e40df850a "hoganwr@gmail.com" . + "OMO" . + "active" . + "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." . + "OBO Metadata Ontology" . + . + "information" . + "https://github.com/information-artifact-ontology/ontology-metadata/issues" . + "http://purl.obolibrary.org/obo/omo.owl" . + _:B36a22030665ec3b19fe471103a9d31a6 . + . + . + "http://purl.obolibrary.org/obo/omo.owl" . + "OMP" . + "active" . + "An ontology of phenotypes covering microbes" . + "Ontology of Microbial Phenotypes" . + . + . + "phenotype" . + "https://github.com/microbialphenotypes/OMP-ontology/issues" . + "http://purl.obolibrary.org/obo/omp.owl" . + _:B6ea48b42e18cc80e0df25e281691100e . + . + . + . + "http://purl.obolibrary.org/obo/omp.obo" . + "http://purl.obolibrary.org/obo/omp.owl" . + . + "OMRSE" . + "active" . + "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations." . + "Ontology for Modeling and Representation of Social Entities" . + . + . + "health" . + "https://github.com/mcwdsi/OMRSE/issues" . + "http://purl.obolibrary.org/obo/omrse.owl" . + _:B52a5eaf9b5ae2e4027871ab845dadc36 . + . + . "http://purl.obolibrary.org/obo/omrse.owl" . "ONE" . "active" . @@ -2980,10 +3437,11 @@ _:Bf77669ed844ce14e32d8c71e40df850a "hoganwr@gm "diet, metabolomics, and nutrition" . "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies/issues" . "http://purl.obolibrary.org/obo/one.owl" . - _:B999be48b3290f874f573b9ddcf5d88bf . + _:Be533aa7880ce9e999e501e5e08e278ec . . . . + "http://purl.obolibrary.org/obo/one.owl" . "ONS" . "active" . . @@ -3001,16 +3459,10 @@ _:Bf77669ed844ce14e32d8c71e40df850a "hoganwr@gm "diet, metabolomics, and nutrition" . "https://github.com/enpadasi/Ontology-for-Nutritional-Studies/issues" . "http://purl.obolibrary.org/obo/ons.owl" . - _:B3c7b4e4d5b4a74617234841b1522e1ae . + _:Bef4df7e98d0194266b6931ab9257c3b2 . . . . -_:B999be48b3290f874f573b9ddcf5d88bf "Chen Yang" . -_:B999be48b3290f874f573b9ddcf5d88bf "chenyangnutrition@gmail.com" . - "http://purl.obolibrary.org/obo/one.owl" . - "ONS: an ontology for a standardized description of interventions and observational studies in nutrition" . -_:B3c7b4e4d5b4a74617234841b1522e1ae "Francesco Vitali" . -_:B3c7b4e4d5b4a74617234841b1522e1ae "francesco.vitali@ibba.cnr.it" . "ONS latest release" . "http://purl.obolibrary.org/obo/ons.owl" . "ONTOAVIDA" . @@ -3028,49 +3480,18 @@ _:B3c7b4e4d5b4a74617234841b1522e1ae "francesco. "https://gitlab.com/fortunalab/ontoavida/-/issues" . . "http://purl.obolibrary.org/obo/ontoavida.owl" . - _:Bbde863dd47585039ab7499736a4a3e2b . + _:B396fc8b24ffe1a7ea678baf7e54032b4 . . . . - "GSSO" . - "active" . - "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences." . - "Gender, Sex, and Sexual Orientation (GSSO) ontology" . - . - "organisms" . - "https://github.com/Superraptor/GSSO/issues" . - "http://purl.obolibrary.org/obo/gsso.owl" . - _:B92991893ee3e3f99971dc2d2783afd57 . - . - . - . - . - "STATO" . - "active" . - "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results." . - "The Statistical Methods Ontology" . - . - . - . - "information technology" . - "https://github.com/ISA-tools/stato/issues" . - "http://purl.obolibrary.org/obo/stato.owl" . - _:Bb302f86118a2cd69f9a1fa2cb8d1540a . - . - . - "Ontology for the Avida digital evolution platform" . - "Ontoavida HTML Browser" . - "Human-readable (HTML)" . -_:Bbde863dd47585039ab7499736a4a3e2b "Miguel A. Fortuna" . -_:Bbde863dd47585039ab7499736a4a3e2b "fortuna@ebd.csic.es" . - "The main ontology in OWL" . - "OWL" . - "http://purl.obolibrary.org/obo/ontoavida.owl" . - . "Equivalent to ontoavida.owl, in obo format" . "OBO" . "http://purl.obolibrary.org/obo/ontoavida.obo" . . + "The main ontology in OWL" . + "OWL" . + "http://purl.obolibrary.org/obo/ontoavida.owl" . + . "ONTONEO" . "active" . "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby." . @@ -3084,17 +3505,9 @@ _:Bbde863dd47585039ab7499736a4a3e2b "fortuna@eb . . "http://purl.obolibrary.org/obo/ontoneo.owl" . - _:B708d89dbae4a5b87e88cee2a8f97d0b3 . + _:Bd04845cf13ca8c4b749b4cb1e5e2760a . . . - "OntONeo: The Obstetric and Neonatal Ontology" . - "Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal Domain" . - "BioPortal Browser" . - "BioPortal" . - "OntoBee Browser" . - "OntoBee" . -_:B708d89dbae4a5b87e88cee2a8f97d0b3 "Fernanda Farinelli" . -_:B708d89dbae4a5b87e88cee2a8f97d0b3 "fernanda.farinelli@gmail.com" . "The full version of ONTONEO in OWL format" . "ONTONEO" . "http://purl.obolibrary.org/obo/ontoneo.owl" . @@ -3106,11 +3519,9 @@ _:B708d89dbae4a5b87e88cee2a8f97d0b3 "fernanda.f "health" . "https://github.com/OOSTT/OOSTT/issues" . "http://purl.obolibrary.org/obo/oostt.owl" . - _:B9a4d599de5ee0ea8d5f74f48bc67944e . + _:Bbbd143fb0b455d3b1a5d5a4976d6ccea . . . -_:B9a4d599de5ee0ea8d5f74f48bc67944e "Mathias Brochhausen" . -_:B9a4d599de5ee0ea8d5f74f48bc67944e "mbrochhausen@gmail.com" . "http://purl.obolibrary.org/obo/oostt.owl" . "OPL" . "active" . @@ -3120,14 +3531,22 @@ _:B9a4d599de5ee0ea8d5f74f48bc67944e "mbrochhaus "organisms" . "https://github.com/OPL-ontology/OPL/issues" . "http://purl.obolibrary.org/obo/opl.owl" . - _:Bc692a0205aea828ec62b6543902a1775 . + _:Bf475150e41ef8eef076ed6a8ca076ea5 . . . -_:Bc692a0205aea828ec62b6543902a1775 "Jie Zheng" . -_:Bc692a0205aea828ec62b6543902a1775 "zhengj2007@gmail.com" . "http://purl.obolibrary.org/obo/opl.owl" . -_:Bc11458b29c8e05b6dae837d6fff46f46 "Yongqun Oliver He" . -_:Bc11458b29c8e05b6dae837d6fff46f46 "yongqunh@med.umich.edu" . + "OPMI" . + "active" . + "The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relations associated with precision medicine and related investigations at different conditions." . + "Ontology of Precision Medicine and Investigation" . + . + "investigations" . + "https://github.com/OPMI/opmi/issues" . + "http://groups.google.com/group/opmi-discuss" . + "http://purl.obolibrary.org/obo/opmi.owl" . + _:B0790ef083ce019257794e2063d17cd75 . + . + . "http://purl.obolibrary.org/obo/opmi.owl" . "ORNASEQ" . "active" . @@ -3137,11 +3556,9 @@ _:Bc11458b29c8e05b6dae837d6fff46f46 "yongqunh@m "investigations" . "https://github.com/safisher/ornaseq/issues" . "http://purl.obolibrary.org/obo/ornaseq.owl" . - _:B9ff7d169bec61ec93a634ac3093d2186 . + _:Bc970a47ab905020f181a0f8013abd5b0 . . . -_:B9ff7d169bec61ec93a634ac3093d2186 "Stephen Fisher" . -_:B9ff7d169bec61ec93a634ac3093d2186 "safisher@upenn.edu" . "http://purl.obolibrary.org/obo/ornaseq.owl" . "OVAE" . "active" . @@ -3151,21 +3568,36 @@ _:B9ff7d169bec61ec93a634ac3093d2186 "safisher@u "health" . "https://github.com/OVAE-Ontology/ovae/issues" . "http://purl.obolibrary.org/obo/ovae.owl" . - _:B1368699ef489207531072305f66b7f1a . + _:Bd9f3b6018a252f847d17750d11f9f6ba . . . -_:B1368699ef489207531072305f66b7f1a "Yongqunh He" . -_:B1368699ef489207531072305f66b7f1a "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/ovae.owl" . - "The anatomy of phenotype ontologies: principles, properties and applications" . - "Using ontologies to describe mouse phenotypes" . - "BioPortal Ontology Browser" . - "BioPortal" . -_:Bcfcb1e04408e4de05761efd89077f99c "George Gkoutos" . -_:Bcfcb1e04408e4de05761efd89077f99c "g.gkoutos@gmail.com" . - "http://purl.obolibrary.org/obo/pato.owl" . - "http://purl.obolibrary.org/obo/pato.obo" . + . + "inactive" . + "Plant Anatomy Ontology" . + "anatomy and development" . + _:Bdaa232546416b94ebf16851fa7247858 . + . + "PATO" . + "active" . + "An ontology of phenotypic qualities (properties, attributes or characteristics)" . + "Phenotype And Trait Ontology" . + . + . + . + "phenotype" . + "https://github.com/pato-ontology/pato/issues" . + . + "http://purl.obolibrary.org/obo/pato.owl" . + _:Ba5ec93703e97bdb031ee10eb7fab483a . + . + . + . + . + . "http://purl.obolibrary.org/obo/pato.json" . + "http://purl.obolibrary.org/obo/pato.obo" . + "http://purl.obolibrary.org/obo/pato.owl" . "Includes axioms linking to other ontologies, but no imports of those ontologies" . "http://purl.obolibrary.org/obo/pato/pato-base.owl" . "PBPKO" . @@ -3177,18 +3609,14 @@ _:Bcfcb1e04408e4de05761efd89077f99c "g.gkoutos@ "https://github.com/InSilicoVida-Research-Lab/pbpko/issues" . . "http://purl.obolibrary.org/obo/pbpko.owl" . - _:Bb9a3fb4167d319fd10294388858fa204 . + _:B50d4e0993110d1f7239259f512f37322 . . . . . - "BioPortal Ontology Browser" . - "BioPortal" . -_:Bb9a3fb4167d319fd10294388858fa204 "Saurav Kumar" . -_:Bb9a3fb4167d319fd10294388858fa204 "saurav.kumar@iispv.cat" . - "http://purl.obolibrary.org/obo/pbpko.owl" . - "http://purl.obolibrary.org/obo/pbpko.obo" . "http://purl.obolibrary.org/obo/pbpko.json" . + "http://purl.obolibrary.org/obo/pbpko.obo" . + "http://purl.obolibrary.org/obo/pbpko.owl" . "PCL" . "active" . . @@ -3209,7 +3637,7 @@ _:Bb9a3fb4167d319fd10294388858fa204 "saurav.kum "phenotype" . "https://github.com/obophenotype/provisional_cell_ontology/issues" . "http://purl.obolibrary.org/obo/pcl.owl" . - _:B70986a03dbd2bafb3a193a33eb126ab7 . + _:B0c23ca25a0454c0f54848b4562ccd838 . . . . @@ -3223,41 +3651,44 @@ _:Bb9a3fb4167d319fd10294388858fa204 "saurav.kum . . . - "SO" . - "active" . - "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases." . - "Sequence types and features ontology" . - . - . - . - "chemistry and biochemistry" . - "https://github.com/The-Sequence-Ontology/SO-Ontologies/issues" . - "https://sourceforge.net/p/song/mailman/song-devel/" . - "http://purl.obolibrary.org/obo/so.owl" . - _:Bfcc50e7155fc999ce63c54924b732274 . - . - . - . - . - . - . -_:B70986a03dbd2bafb3a193a33eb126ab7 "David Osumi-Sutherland" . -_:B70986a03dbd2bafb3a193a33eb126ab7 "davidos@ebi.ac.uk" . - "http://purl.obolibrary.org/obo/pcl.owl" . - "http://purl.obolibrary.org/obo/pcl.obo" . - "http://purl.obolibrary.org/obo/pcl.json" . - "http://purl.obolibrary.org/obo/pcl-base.owl" . - "http://purl.obolibrary.org/obo/pcl-base.obo" . "http://purl.obolibrary.org/obo/pcl-base.json" . - "http://purl.obolibrary.org/obo/pcl-full.owl" . - "http://purl.obolibrary.org/obo/pcl-full.obo" . + "http://purl.obolibrary.org/obo/pcl-base.obo" . + "http://purl.obolibrary.org/obo/pcl-base.owl" . "http://purl.obolibrary.org/obo/pcl-full.json" . - "http://purl.obolibrary.org/obo/pcl-simple.owl" . - "http://purl.obolibrary.org/obo/pcl-simple.obo" . + "http://purl.obolibrary.org/obo/pcl-full.obo" . + "http://purl.obolibrary.org/obo/pcl-full.owl" . "http://purl.obolibrary.org/obo/pcl-simple.json" . -_:B2319aded8dcffa6b8f202530d11558a2 "Ramona Walls" . -_:B2319aded8dcffa6b8f202530d11558a2 "rlwalls2008@gmail.com" . + "http://purl.obolibrary.org/obo/pcl-simple.obo" . + "http://purl.obolibrary.org/obo/pcl-simple.owl" . + "http://purl.obolibrary.org/obo/pcl.json" . + "http://purl.obolibrary.org/obo/pcl.obo" . + "http://purl.obolibrary.org/obo/pcl.owl" . + "PCO" . + "active" . + . + . + . + . + . + . + . + . + "An ontology about groups of interacting organisms such as populations and communities" . + "Population and Community Ontology" . + . + "environment" . + "https://github.com/PopulationAndCommunityOntology/pco/issues" . + "http://purl.obolibrary.org/obo/pco.owl" . + _:B0f4400485e180641f06579f910e9885c . + . + . "http://purl.obolibrary.org/obo/pco.owl" . + . + "inactive" . + "Platynereis stage ontology" . + "anatomy and development" . + _:B8f670120683f3d2a7fd1d3b1109a15c3 . + . "PDRO" . "active" . "An ontology to describe entities related to prescription of drugs" . @@ -3267,18 +3698,47 @@ _:B2319aded8dcffa6b8f202530d11558a2 "rlwalls200 "information" . "https://github.com/OpenLHS/PDRO/issues" . "http://purl.obolibrary.org/obo/pdro.owl" . - _:B6e077e715d38732d9469352dd9c22780 . + _:B4e2f8f907662ad894ae23fcf57ca9747 . . . - "The Prescription of Drug Ontology 2.0 (PDRO): More Than the Sum of Its Parts" . -_:B6e077e715d38732d9469352dd9c22780 "Paul Fabry" . -_:B6e077e715d38732d9469352dd9c22780 "paul.fabry@usherbrooke.ca" . "http://purl.obolibrary.org/obo/pdro.owl" . - "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." . -_:B63bba832766da2bc5ec153643d760854 "Pankaj Jaiswal" . -_:B63bba832766da2bc5ec153643d760854 "jaiswalp@science.oregonstate.edu" . - "http://purl.obolibrary.org/obo/peco.owl" . + "PdumDv" . + "inactive" . + "Life cycle stages for Platynereis dumerilii" . + "Platynereis Developmental Stages" . + . + "anatomy and development" . + "https://github.com/obophenotype/developmental-stage-ontologies/issues" . + "http://purl.obolibrary.org/obo/pdumdv.owl" . + _:B6862790ca6fd10110b805bb6f2c60046 . + . + . + . + . + "http://purl.obolibrary.org/obo/pdumdv.obo" . + "http://purl.obolibrary.org/obo/pdumdv.owl" . + "PECO" . + "active" . + "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." . + "Plant Experimental Conditions Ontology" . + . + . + "investigations" . + "https://github.com/Planteome/plant-experimental-conditions-ontology/issues" . + "http://purl.obolibrary.org/obo/peco.owl" . + _:B355a86af4126053edd0322066f695892 . + . + . + . + . "http://purl.obolibrary.org/obo/peco.obo" . + "http://purl.obolibrary.org/obo/peco.owl" . + . + "inactive" . + "Plant Growth and Development Stage" . + "anatomy and development" . + _:Bafb6070279c84474c7dd1a4bee3b6a09 . + . "PHIPO" . "active" . . @@ -3289,15 +3749,12 @@ _:B63bba832766da2bc5ec153643d760854 "jaiswalp@s "phenotype" . "https://github.com/PHI-base/phipo/issues" . "http://purl.obolibrary.org/obo/phipo.owl" . - _:Ba0c253d2b0e9985e913320a2bf2ab901 . + _:B9555a09a396642e2c269d43462e56608 . . . . - "PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions" . -_:Ba0c253d2b0e9985e913320a2bf2ab901 "Alayne Cuzick" . -_:Ba0c253d2b0e9985e913320a2bf2ab901 "alayne.cuzick@rothamsted.ac.uk" . - "http://purl.obolibrary.org/obo/phipo.owl" . "http://purl.obolibrary.org/obo/phipo.obo" . + "http://purl.obolibrary.org/obo/phipo.owl" . "PLANA" . "active" . . @@ -3309,15 +3766,12 @@ _:Ba0c253d2b0e9985e913320a2bf2ab901 "alayne.cuz "anatomy and development" . "https://github.com/obophenotype/planaria-ontology/issues" . "http://purl.obolibrary.org/obo/plana.owl" . - _:Bf669bfcbc4cd0c6a64191f56117c3a49 . + _:B861374bb6994e3ba72e23b2834971afd . . . . - "Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms" . -_:Bf669bfcbc4cd0c6a64191f56117c3a49 "Sofia Robb" . -_:Bf669bfcbc4cd0c6a64191f56117c3a49 "smr@stowers.org" . - "http://purl.obolibrary.org/obo/plana.owl" . "http://purl.obolibrary.org/obo/plana.obo" . + "http://purl.obolibrary.org/obo/plana.owl" . "PLANP" . "active" . . @@ -3330,62 +3784,98 @@ _:Bf669bfcbc4cd0c6a64191f56117c3a49 "smr@stower "phenotype" . "https://github.com/obophenotype/planarian-phenotype-ontology/issues" . "http://purl.obolibrary.org/obo/planp.owl" . - _:Bda88117074ff78feb194690e0019e884 . + _:B8d15d0dfa041d98ec5f724ea74303d46 . . . . -_:Bda88117074ff78feb194690e0019e884 "Sofia Robb" . -_:Bda88117074ff78feb194690e0019e884 "smr@stowers.org" . - "http://purl.obolibrary.org/obo/planp.owl" . "http://purl.obolibrary.org/obo/planp.obo" . - "The plant ontology as a tool for comparative plant anatomy and genomic analyses." . - "Planteome browser" . - "Planteome" . -_:Bfa22a3ab9e258b0ba425cbcc3ed5c68d "Pankaj Jaiswal" . -_:Bfa22a3ab9e258b0ba425cbcc3ed5c68d "jaiswalp@science.oregonstate.edu" . - "http://purl.obolibrary.org/obo/po.owl" . + "http://purl.obolibrary.org/obo/planp.owl" . + "inactive" . + "Plasmodium life cycle" . + "anatomy and development" . + _:B5133764bb746db4c2d175b1fc52e2561 . + . + . + "PO" . + "active" . + "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data." . + "Plant Ontology" . + . + . + . + "anatomy and development" . + "https://github.com/Planteome/plant-ontology/issues" . + . + "http://purl.obolibrary.org/obo/po.owl" . + _:B283522e16d330b7b0894f03e59137d78 . + . + . + . + . + . "http://purl.obolibrary.org/obo/po.obo" . - "Porifera" . - "The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology" . -_:Be4a13e6cfa1d612e6b5f38cf40525cf6 "Bob Thacker" . -_:Be4a13e6cfa1d612e6b5f38cf40525cf6 "robert.thacker@stonybrook.edu" . - "http://purl.obolibrary.org/obo/poro.owl" . - "http://purl.obolibrary.org/obo/poro.obo" . - "PPO" . - "active" . - . - "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales." . + "http://purl.obolibrary.org/obo/po.owl" . + . + "PORO" . + "active" . + . + . + "An ontology covering the anatomy of the taxon Porifera (sponges)" . + "Porifera Ontology" . + . + . + "anatomy and development" . + "https://github.com/obophenotype/porifera-ontology/issues" . + "http://purl.obolibrary.org/obo/poro.owl" . + _:B6f584c38cf0846f0dd1d59f06d30b622 . + . + . + . + "http://purl.obolibrary.org/obo/poro.obo" . + "http://purl.obolibrary.org/obo/poro.owl" . + . + "PPO" . + "active" . + "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales." . "Plant Phenology Ontology" . . "phenotype" . "https://github.com/PlantPhenoOntology/PPO/issues" . "ppo-discuss@googlegroups.com" . "http://purl.obolibrary.org/obo/ppo.owl" . - _:Bd07869c7d2e46d6300431093df953450 . + _:Bcf20ade2462a02f0d29eb1d0ed90b2ea . . . -_:Bd07869c7d2e46d6300431093df953450 "Ramona Walls" . -_:Bd07869c7d2e46d6300431093df953450 "rlwalls2008@gmail.com" . "http://purl.obolibrary.org/obo/ppo.owl" . - "Protein Ontology (PRO): enhancing and scaling up the representation of protein entities" . - "BioPortal Browser" . - "BioPortal" . - "PRO Home" . - "PRO" . -_:B9ff92ce1c0c2a773a822e8d2931a7429 "Darren Natale" . -_:B9ff92ce1c0c2a773a822e8d2931a7429 "dan5@georgetown.edu" . - "PRO after reasoning has been applied, OWL format. Add '.gz' for compressed." . - "pro_reasoned.owl" . - "http://purl.obolibrary.org/obo/pr.owl" . - "PRO after reasoning has been applied, OBO format." . - "pro_reasoned.obo" . - "http://purl.obolibrary.org/obo/pr.obo" . - "PRO without reasoning applied, OWL format. Add '.gz' for compressed." . - "pro_nonreasoned.owl" . - "http://purl.obolibrary.org/obo/pr-asserted.owl" . + "PR" . + "active" . + "An ontological representation of protein-related entities" . + "PRotein Ontology (PRO)" . + . + . + "chemistry and biochemistry" . + "https://github.com/PROconsortium/PRoteinOntology/issues" . + . + . + "http://purl.obolibrary.org/obo/pr.owl" . + _:B3d62911cb67b7d21ad66398b5a2ef085 . + . + . + . + . + . "PRO without reasoning applied, OBO format." . "pro_nonreasoned.obo" . "http://purl.obolibrary.org/obo/pr-asserted.obo" . + "PRO without reasoning applied, OWL format. Add '.gz' for compressed." . + "pro_nonreasoned.owl" . + "http://purl.obolibrary.org/obo/pr-asserted.owl" . + "PRO after reasoning has been applied, OBO format." . + "pro_reasoned.obo" . + "http://purl.obolibrary.org/obo/pr.obo" . + "PRO after reasoning has been applied, OWL format. Add '.gz' for compressed." . + "pro_reasoned.owl" . + "http://purl.obolibrary.org/obo/pr.owl" . "PROCO" . "active" . . @@ -3400,23 +3890,15 @@ _:B9ff92ce1c0c2a773a822e8d2931a7429 "dan5@georg "chemistry and biochemistry" . "https://github.com/proco-ontology/PROCO/issues" . "http://purl.obolibrary.org/obo/proco.owl" . - _:B076dc4bc148a2386f28ed218dc0779b0 . + _:B90295f626fa16aabffbc5bece8fba9dd . . . - "SBO" . - "active" . - "Terms commonly used in Systems Biology, and in particular in computational modeling." . - "Systems Biology Ontology" . - . - "chemistry and biochemistry" . - "https://github.com/EBI-BioModels/SBO/issues" . - "http://purl.obolibrary.org/obo/sbo.owl" . - _:B2fbbda2e8e70a0ed218f453d1c7c4417 . - . - . -_:B076dc4bc148a2386f28ed218dc0779b0 "Wes Schafer" . -_:B076dc4bc148a2386f28ed218dc0779b0 "wes_schafer@merck.com" . "http://purl.obolibrary.org/obo/proco.owl" . + "inactive" . + "Proteomics data and process provenance" . + "chemistry and biochemistry" . + _:Be7eb0c13891bdf6034fccfd51f1d0717 . + . "PSDO" . "active" . . @@ -3429,11 +3911,9 @@ _:B076dc4bc148a2386f28ed218dc0779b0 "wes_schafe "information" . "https://github.com/Display-Lab/psdo/issues" . "http://purl.obolibrary.org/obo/psdo.owl" . - _:Bdc6fbc753c4cee6f9bcd9492604da4bf . + _:B1933f090fefb4f8fdedd5946836034e9 . . . -_:Bdc6fbc753c4cee6f9bcd9492604da4bf "Zach Landis-Lewis" . -_:Bdc6fbc753c4cee6f9bcd9492604da4bf "zachll@umich.edu" . "http://purl.obolibrary.org/obo/psdo.owl" . "PSO" . "active" . @@ -3445,14 +3925,12 @@ _:Bdc6fbc753c4cee6f9bcd9492604da4bf "zachll@umi "agriculture" . "https://github.com/Planteome/plant-stress-ontology/issues" . "http://purl.obolibrary.org/obo/pso.owl" . - _:B025ba594c915c8f6c8753a826806947f . + _:Bf7ab83c00f9794ef53805b5736e9b5f3 . . . . -_:B025ba594c915c8f6c8753a826806947f "Laurel Cooper" . -_:B025ba594c915c8f6c8753a826806947f "cooperl@oregonstate.edu" . - "http://purl.obolibrary.org/obo/pso.owl" . "http://purl.obolibrary.org/obo/pso.obo" . + "http://purl.obolibrary.org/obo/pso.owl" . "PW" . "active" . "A controlled vocabulary for annotating gene products to pathways." . @@ -3464,19 +3942,13 @@ _:B025ba594c915c8f6c8753a826806947f "cooperl@or "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues" . . "http://purl.obolibrary.org/obo/pw.owl" . - _:B670d14747f0a23b6de8c6f2b95f1eda4 . + _:B5199eab58a4c4834ec265504423f93ca . . . . . - "The Rat Genome Database pathway portal." . - "The pathway ontology - updates and applications." . - "RGD Ontology Browser" . - "RGD" . -_:B670d14747f0a23b6de8c6f2b95f1eda4 "G. Thomas Hayman" . -_:B670d14747f0a23b6de8c6f2b95f1eda4 "gthayman@mcw.edu" . - "http://purl.obolibrary.org/obo/pw.owl" . "http://purl.obolibrary.org/obo/pw.obo" . + "http://purl.obolibrary.org/obo/pw.owl" . "RBO" . "active" . . @@ -3492,7 +3964,7 @@ _:B670d14747f0a23b6de8c6f2b95f1eda4 "gthayman@m "environment" . "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues" . "http://purl.obolibrary.org/obo/rbo.owl" . - _:B827ab2a26bb4212ee75af70c307dc91d . + _:B53020856662005aebfdd1ce1d096c7a1 . . . . @@ -3500,24 +3972,66 @@ _:B670d14747f0a23b6de8c6f2b95f1eda4 "gthayman@m . . . -_:B827ab2a26bb4212ee75af70c307dc91d "Daniel C. Berrios" . -_:B827ab2a26bb4212ee75af70c307dc91d "daniel.c.berrios@nasa.gov" . - "http://purl.obolibrary.org/obo/rbo.owl" . - "http://purl.obolibrary.org/obo/rbo.obo" . "http://purl.obolibrary.org/obo/rbo.json" . - "http://purl.obolibrary.org/obo/rbo/rbo-base.owl" . - "http://purl.obolibrary.org/obo/rbo/rbo-base.obo" . + "http://purl.obolibrary.org/obo/rbo.obo" . + "http://purl.obolibrary.org/obo/rbo.owl" . "http://purl.obolibrary.org/obo/rbo/rbo-base.json" . -_:Baecf273047174f35e8aee41f4fc088de "Chris Mungall" . -_:Baecf273047174f35e8aee41f4fc088de "cjmungall@lbl.gov" . - "Canonical edition" . - "Relation Ontology" . - "http://purl.obolibrary.org/obo/ro.owl" . + "http://purl.obolibrary.org/obo/rbo/rbo-base.obo" . + "http://purl.obolibrary.org/obo/rbo/rbo-base.owl" . + "inactive" . + "For the description of covalent bonds in proteins." . + "Protein covalent bond" . + "chemistry and biochemistry" . + _:B75c9effa51d05c7624c3a44ebd5d4af6 . + . + "orphaned" . + "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time." . + "Physico-chemical process" . + "chemistry and biochemistry" . + "http://purl.obolibrary.org/obo/rex.owl" . + . + "http://purl.obolibrary.org/obo/rex.owl" . + "inactive" . + "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures." . + "RNA ontology" . + . + "chemistry and biochemistry" . + "https://github.com/BGSU-RNA/rnao/issues" . + . + "http://purl.obolibrary.org/obo/rnao.owl" . + _:B39742d8d0589511cd27682226c239304 . + . + . + . + "http://purl.obolibrary.org/obo/rnao.obo" . + "http://purl.obolibrary.org/obo/rnao.owl" . + "RO" . + "active" . + "Relationship types shared across multiple ontologies" . + "Relation Ontology" . + . + "upper" . + "https://github.com/oborel/obo-relations/issues" . + "https://groups.google.com/forum/#!forum/obo-relations" . + "http://purl.obolibrary.org/obo/ro.owl" . + _:B2aa976a1af06784ed822206e389f1d59 . + . + . + . + . + . + . + . + . + . + "Relation Ontology in obojson format" . + "http://purl.obolibrary.org/obo/ro.json" . "The obo edition is less expressive than the OWL, and has imports merged in" . "Relation Ontology in obo format" . "http://purl.obolibrary.org/obo/ro.obo" . - "Relation Ontology in obojson format" . - "http://purl.obolibrary.org/obo/ro.json" . + "Canonical edition" . + "Relation Ontology" . + "http://purl.obolibrary.org/obo/ro.owl" . "Minimal subset intended to work with BFO-classes" . "RO Core relations" . "http://purl.obolibrary.org/obo/ro/core.owl" . @@ -3526,18 +4040,18 @@ _:Baecf273047174f35e8aee41f4fc088de "cjmungall@ "RO base ontology" . "http://purl.obolibrary.org/obo/ro/ro-base.owl" . . + "Ecology subset" . + "http://purl.obolibrary.org/obo/ro/subsets/ro-eco.owl" . "For use in ecology and environmental science" . "Interaction relations" . "http://purl.obolibrary.org/obo/ro/subsets/ro-interaction.owl" . - "Ecology subset" . - "http://purl.obolibrary.org/obo/ro/subsets/ro-eco.owl" . "For use in neuroscience" . "Neuroscience subset" . "http://purl.obolibrary.org/obo/ro/subsets/ro-neuro.owl" . . + . "RS" . "active" . - . "Ontology of rat strains" . "Rat Strain Ontology" . . @@ -3546,19 +4060,13 @@ _:Baecf273047174f35e8aee41f4fc088de "cjmungall@ "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues" . . "http://purl.obolibrary.org/obo/rs.owl" . - _:Be50b4047a129328d93159fe52ec4096e . + _:B1ebc15991a69719beadb33b365cc2257 . . . . . - "Rattus" . - "Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD." . - "RGD Ontology Browser" . - "RGD" . -_:Be50b4047a129328d93159fe52ec4096e "Shur-Jen Wang" . -_:Be50b4047a129328d93159fe52ec4096e "sjwang@mcw.edu" . - "http://purl.obolibrary.org/obo/rs.owl" . "http://purl.obolibrary.org/obo/rs.obo" . + "http://purl.obolibrary.org/obo/rs.owl" . "RXNO" . "active" . "Connects organic name reactions to their roles in an organic synthesis and to processes in MOP" . @@ -3568,13 +4076,86 @@ _:Be50b4047a129328d93159fe52ec4096e "sjwang@mcw "https://github.com/rsc-ontologies/rxno/issues" . "chemistry-ontologies@googlegroups.com" . "http://purl.obolibrary.org/obo/rxno.owl" . - _:B254a7a259fb1392bbc134d441d025d2f . + _:Ba5c519a9286e48634150c35eb130c212 . . . -_:B254a7a259fb1392bbc134d441d025d2f "Colin Batchelor" . -_:B254a7a259fb1392bbc134d441d025d2f "batchelorc@rsc.org" . "Name Reaction Ontology" . "http://purl.obolibrary.org/obo/rxno.owl" . + . + "inactive" . + "Subcellular anatomy ontology" . + "anatomy and development" . + _:Ba4024bee1f53b3972bbbab03a60ceaaf . + . + "SBO" . + "active" . + "Terms commonly used in Systems Biology, and in particular in computational modeling." . + "Systems Biology Ontology" . + . + "chemistry and biochemistry" . + "https://github.com/EBI-BioModels/SBO/issues" . + "http://purl.obolibrary.org/obo/sbo.owl" . + _:B405e6462f0c776583fa92859212fdcde . + . + . + "http://purl.obolibrary.org/obo/sbo.owl" . + "SCDO" . + "active" . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease." . + "Sickle Cell Disease Ontology" . + . + . + . + . + "health" . + "https://github.com/scdodev/scdo-ontology/issues" . + "http://purl.obolibrary.org/obo/scdo.owl" . + _:B5c8d1ee0f6f00b7836466f9a90eda9af . + . + . + . + "http://purl.obolibrary.org/obo/scdo.obo" . + "http://purl.obolibrary.org/obo/scdo.owl" . + "inactive" . + "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments." . + "Sample processing and separation techniques" . + "investigations" . + _:B8def989fa9d5b13f6bf48129f40d0987 . + . + . + . + "http://purl.obolibrary.org/obo/sep.owl" . "SEPIO" . "active" . "An ontology for representing the provenance of scientific claims and the evidence that supports them." . @@ -3583,13 +4164,25 @@ _:B254a7a259fb1392bbc134d441d025d2f "batchelorc "investigations" . "https://github.com/monarch-initiative/SEPIO-ontology/issues" . "http://purl.obolibrary.org/obo/sepio.owl" . - _:B3de2cf2bfa116abb94152172ded95e89 . + _:B21cac7e5c6637d8bf417465bd417d6f1 . . . -_:B3de2cf2bfa116abb94152172ded95e89 "Matthew Brush" . -_:B3de2cf2bfa116abb94152172ded95e89 "mhb120@gmail.com" . "SEPIO" . "http://purl.obolibrary.org/obo/sepio.owl" . + "SIBO" . + "orphaned" . + "Social Behavior in insects" . + "Social Insect Behavior Ontology" . + . + "biological systems" . + "https://github.com/obophenotype/sibo/issues" . + "http://purl.obolibrary.org/obo/sibo.owl" . + _:Bacc9b2a1399e6ce8783bdc5621e9ddda . + . + . + . + "http://purl.obolibrary.org/obo/sibo.obo" . + "http://purl.obolibrary.org/obo/sibo.owl" . "SLSO" . "active" . "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data." . @@ -3599,66 +4192,97 @@ _:B3de2cf2bfa116abb94152172ded95e89 "mhb120@gma "https://github.com/nasa/LSDAO/issues" . . "http://purl.obolibrary.org/obo/slso.owl" . - _:Be8fa1dfcb92a33e7e48a198a36c8a182 . + _:B69dc0482baa4e216d011a739255697d4 . . . . . . - "BioPortal Ontology Browser" . - "BioPortal" . -_:Be8fa1dfcb92a33e7e48a198a36c8a182 "Dan Berrios" . -_:Be8fa1dfcb92a33e7e48a198a36c8a182 "daniel.c.berrios@nasa.gov" . - "http://purl.obolibrary.org/obo/slso.owl" . - "http://purl.obolibrary.org/obo/slso.obo" . - "http://purl.obolibrary.org/obo/slso.json" . "Includes axioms linking to other ontologies, but no imports of those ontologies" . "http://purl.obolibrary.org/obo/slso-base.owl" . - "The Sequence Ontology: a tool for the unification of genome annotations." . - "Evolution of the Sequence Ontology terms and relationships." . -_:Bfcc50e7155fc999ce63c54924b732274 "Karen Eilbeck" . -_:Bfcc50e7155fc999ce63c54924b732274 "keilbeck@genetics.utah.edu" . - "Main SO OWL release" . - "http://purl.obolibrary.org/obo/so.owl" . - "Main SO release in OBO Format" . - "http://purl.obolibrary.org/obo/so.obo" . - "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" . - "Sequence Ontology Feature Annotation (SOFA) subset (OWL)" . - "http://purl.obolibrary.org/obo/so/subsets/SOFA.owl" . - "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" . - "Sequence Ontology Feature Annotation (SOFA) subset (OBO Format)" . - "http://purl.obolibrary.org/obo/so/subsets/SOFA.obo" . - "SPD" . - "active" . - . - "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)." . - "Spider Ontology" . - . + "http://purl.obolibrary.org/obo/slso.json" . + "http://purl.obolibrary.org/obo/slso.obo" . + "http://purl.obolibrary.org/obo/slso.owl" . + "SO" . + "active" . + "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases." . + "Sequence types and features ontology" . + . + . + . + "chemistry and biochemistry" . + "https://github.com/The-Sequence-Ontology/SO-Ontologies/issues" . + "https://sourceforge.net/p/song/mailman/song-devel/" . + "http://purl.obolibrary.org/obo/so.owl" . + _:Ba3c1d02c8d0bae5375af837befcbe7f8 . + . + . + . + . + . + . + "Main SO release in OBO Format" . + "http://purl.obolibrary.org/obo/so.obo" . + "Main SO OWL release" . + "http://purl.obolibrary.org/obo/so.owl" . + "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" . + "Sequence Ontology Feature Annotation (SOFA) subset (OBO Format)" . + "http://purl.obolibrary.org/obo/so/subsets/SOFA.obo" . + "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" . + "Sequence Ontology Feature Annotation (SOFA) subset (OWL)" . + "http://purl.obolibrary.org/obo/so/subsets/SOFA.owl" . + . + "inactive" . + "Suggested Ontology for Pharmacogenomics" . + "chemistry and biochemistry" . + _:Bc9846af4da74603f8ced8dcfbecdd132 . + . + . + "SPD" . + "active" . + "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)." . + "Spider Ontology" . + . . "anatomy and development" . "https://github.com/obophenotype/spider-ontology/issues" . "http://purl.obolibrary.org/obo/spd.owl" . - _:Bbb569244554e57fa3b2f4dd921518c2c . + _:B07036ce6a22abf395f7f1caca439f594 . . . - "spiders" . - "The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data" . -_:Bbb569244554e57fa3b2f4dd921518c2c "Martin Ramirez" . -_:Bbb569244554e57fa3b2f4dd921518c2c "ramirez@macn.gov.ar" . "http://purl.obolibrary.org/obo/spd.owl" . - "Experiment design driven FAIRification of omics data matrices, an exemplar" . - "Semantic concept schema of the linear mixed model of experimental observations" . -_:Bb302f86118a2cd69f9a1fa2cb8d1540a "Philippe Rocca-Serra" . -_:Bb302f86118a2cd69f9a1fa2cb8d1540a "proccaserra@gmail.com" . + "STATO" . + "active" . + "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results." . + "The Statistical Methods Ontology" . + . + . + . + "information technology" . + "https://github.com/ISA-tools/stato/issues" . + "http://purl.obolibrary.org/obo/stato.owl" . + _:Bab5b5991febc3e5f0508f4abc6dce3be . + . + . "http://purl.obolibrary.org/obo/stato.owl" . - "The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation" . -_:Befab4647ed3d271bac9fcf842f5a0077 "Allyson Lister" . -_:Befab4647ed3d271bac9fcf842f5a0077 "allyson.lister@oerc.ox.ac.uk" . - "http://purl.obolibrary.org/obo/swo.owl" . + "SWO" . + "active" . + "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community." . + "Software ontology" . + . + . + "information technology" . + "https://github.com/allysonlister/swo/issues" . + "http://purl.obolibrary.org/obo/swo.owl" . + _:B2786a86c688baa83461accad24de884b . + . + . + . "http://purl.obolibrary.org/obo/swo.json" . + "http://purl.obolibrary.org/obo/swo.owl" . + . "SYMP" . "active" . - . "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease." . "Symptom Ontology" . . @@ -3667,15 +4291,12 @@ _:Befab4647ed3d271bac9fcf842f5a0077 "allyson.li "health" . "https://github.com/DiseaseOntology/SymptomOntology/issues" . "http://purl.obolibrary.org/obo/symp.owl" . - _:B91266f76fb870286e032ec2e19bdaa54 . + _:B0e3ab52d7e6292d19ed2a351d6e69b95 . . . . - "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database" . -_:B91266f76fb870286e032ec2e19bdaa54 "Lynn Schriml" . -_:B91266f76fb870286e032ec2e19bdaa54 "lynn.schriml@gmail.com" . - "http://purl.obolibrary.org/obo/symp.owl" . "http://purl.obolibrary.org/obo/symp.obo" . + "http://purl.obolibrary.org/obo/symp.owl" . "T4FS" . "active" . "A terminology for the skills necessary to make data FAIR and to keep it FAIR." . @@ -3685,7 +4306,7 @@ _:B91266f76fb870286e032ec2e19bdaa54 "lynn.schri "information" . "https://github.com/terms4fairskills/FAIRterminology/issues" . "http://purl.obolibrary.org/obo/t4fs.owl" . - _:B1346a3f8499f76ab3d84fcfeebb84ab5 . + _:B9c2d74e0a16f112616424c48aa4b8064 . . . . @@ -3693,18 +4314,49 @@ _:B91266f76fb870286e032ec2e19bdaa54 "lynn.schri . . . - "EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report" . -_:B1346a3f8499f76ab3d84fcfeebb84ab5 "Allyson Lister" . -_:B1346a3f8499f76ab3d84fcfeebb84ab5 "allyson.lister@oerc.ox.ac.uk" . - "http://purl.obolibrary.org/obo/t4fs.owl" . - "http://purl.obolibrary.org/obo/t4fs.obo" . - "http://purl.obolibrary.org/obo/t4fs.json" . - "This community view of T4FS makes the ontology available in OWL without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." . - "http://purl.obolibrary.org/obo/t4fs-community.owl" . - "This community view of T4FS makes the ontology available in OBO format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." . - "http://purl.obolibrary.org/obo/t4fs-community.obo" . "This community view of T4FS makes the ontology available in JSON format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." . "http://purl.obolibrary.org/obo/t4fs-community.json" . + "This community view of T4FS makes the ontology available in OBO format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." . + "http://purl.obolibrary.org/obo/t4fs-community.obo" . + "This community view of T4FS makes the ontology available in OWL without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." . + "http://purl.obolibrary.org/obo/t4fs-community.owl" . + "http://purl.obolibrary.org/obo/t4fs.json" . + "http://purl.obolibrary.org/obo/t4fs.obo" . + "http://purl.obolibrary.org/obo/t4fs.owl" . + . + "inactive" . + "The anatomy of the Tick, Families: Ixodidae, Argassidae" . + "Tick Anatomy Ontology" . + . + "anatomy and development" . + "http://purl.obolibrary.org/obo/tads.owl" . + _:Bc5c0dd8c436ce751b65ef9784d4ae522 . + . + . + . + "http://purl.obolibrary.org/obo/tads.obo" . + "http://purl.obolibrary.org/obo/tads.owl" . + . + "inactive" . + "Terminology of Anatomy of Human Embryology" . + "anatomy and development" . + _:Be116c51a4cbad58177076b62c6fcc201 . + . + "inactive" . + "Terminology of Anatomy of Human Histology" . + "health" . + _:Bcb6b62dbb5a31e7e7079f624fde8f704 . + . + "inactive" . + "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa" . + "Teleost Anatomy Ontology" . + . + . + "anatomy and development" . + _:B00712537b6f0315024f119ff5439a953 . + . + . + "http://purl.obolibrary.org/obo/tao.owl" . "TAXRANK" . "active" . "A vocabulary of taxonomic ranks (species, family, phylum, etc)" . @@ -3714,21 +4366,43 @@ _:B1346a3f8499f76ab3d84fcfeebb84ab5 "allyson.li "organisms" . "https://github.com/phenoscape/taxrank/issues" . "http://purl.obolibrary.org/obo/taxrank.owl" . - _:Be13c233d7c78b0b57e130b8c93d4c22f . + _:B293a9add6183b05b566f15291a87d5f5 . . . . - "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes" . -_:Be13c233d7c78b0b57e130b8c93d4c22f "Jim Balhoff" . -_:Be13c233d7c78b0b57e130b8c93d4c22f "balhoff@renci.org" . - "http://purl.obolibrary.org/obo/taxrank.owl" . "http://purl.obolibrary.org/obo/taxrank.obo" . - "Planteome browser" . - "Planteome" . -_:Bbb357f0eb619b00224f13986545d5971 "Pankaj Jaiswal" . -_:Bbb357f0eb619b00224f13986545d5971 "jaiswalp@science.oregonstate.edu" . - "http://purl.obolibrary.org/obo/to.owl" . + "http://purl.obolibrary.org/obo/taxrank.owl" . + . + "inactive" . + "A structured controlled vocabulary of the anatomy of mosquitoes." . + "Mosquito gross anatomy ontology" . + . + "anatomy and development" . + "http://purl.obolibrary.org/obo/tgma.owl" . + _:B2c8782d4fa1f87fcf829ed4b7340feba . + . + . + . + "http://purl.obolibrary.org/obo/tgma.obo" . + "http://purl.obolibrary.org/obo/tgma.owl" . + . + "TO" . + "active" . + "A controlled vocabulary to describe phenotypic traits in plants." . + "Plant Trait Ontology" . + . + . + "phenotype" . + "https://github.com/Planteome/plant-trait-ontology/issues" . + . + "http://purl.obolibrary.org/obo/to.owl" . + _:B96db2cb9f508f01c780603a9b80d3dbd . + . + . + . + . "http://purl.obolibrary.org/obo/to.obo" . + "http://purl.obolibrary.org/obo/to.owl" . "TRANS" . "active" . "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host." . @@ -3739,17 +4413,15 @@ _:Bbb357f0eb619b00224f13986545d5971 "jaiswalp@s "health" . "https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues" . "http://purl.obolibrary.org/obo/trans.owl" . - _:B9d56af8ccd3dd3dbd7f1c3b53b6fa2dc . + _:Be5e356e52b9bdb7f48cf98f19f42dfa5 . . . . -_:B9d56af8ccd3dd3dbd7f1c3b53b6fa2dc "Lynn Schriml" . -_:B9d56af8ccd3dd3dbd7f1c3b53b6fa2dc "lynn.schriml@gmail.com" . - "http://purl.obolibrary.org/obo/trans.owl" . "http://purl.obolibrary.org/obo/trans.obo" . + "http://purl.obolibrary.org/obo/trans.owl" . + . "TTO" . "active" . - . "An ontology covering the taxonomy of teleosts (bony fish)" . "Teleost taxonomy ontology" . . @@ -3757,14 +4429,10 @@ _:B9d56af8ccd3dd3dbd7f1c3b53b6fa2dc "lynn.schri "organisms" . "https://github.com/phenoscape/teleost-taxonomy-ontology/issues" . "http://purl.obolibrary.org/obo/tto.owl" . - _:Bd96580ab0baa7bb3f1e025a1a779c202 . + _:B564c9b83e5aaf3c7b3fd78b17b0ebf49 . . . . - "Teleostei" . - "The Teleost Taxonomy Ontology" . -_:Bd96580ab0baa7bb3f1e025a1a779c202 "Jim Balhoff" . -_:Bd96580ab0baa7bb3f1e025a1a779c202 "balhoff@renci.org" . "http://purl.obolibrary.org/obo/tto.obo" . "http://purl.obolibrary.org/obo/tto.owl" . "TXPO" . @@ -3778,93 +4446,132 @@ _:Bd96580ab0baa7bb3f1e025a1a779c202 "balhoff@re . . "http://purl.obolibrary.org/obo/txpo.owl" . - _:B26fa9fd66fa771e04fbf6895da24b8c8 . + _:B17608412e8064aae632ddbeb3d03a9d9 . . . - "Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management" . - "BioPortal Browser" . - "BioPortal" . - "TOXPILOT" . - "TOXPILOT" . -_:B26fa9fd66fa771e04fbf6895da24b8c8 "Yuki Yamagata" . -_:B26fa9fd66fa771e04fbf6895da24b8c8 "yuki.yamagata@riken.jp" . "http://purl.obolibrary.org/obo/txpo.owl" . - "Uberon, an integrative multi-species anatomy ontology" . - "Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon" . - "NIH R24-OD011883" . - "NIH R01-HG004838" . - "NIH P41-HG002273" . - "NSF DEB-0956049" . - "Gene Ontology AmiGO 2 Browser" . - "RGD" . - "Gene Ontology AmiGO 2 Browser" . - "AmiGO (SUBSET)" . - "Bgee gene expression queries" . - "Bgee (gene expression)" . - "FANTOM5 Data Portal" . - "FANTOM5" . - "INCF KnowledgeSpace Portal" . - "KnowledgeSpace" . -_:B0562829a56a481f79dde97c00c885675 "Chris Mungall" . -_:B0562829a56a481f79dde97c00c885675 "cjmungall@lbl.gov" . + . + "UBERON" . + "active" . + . + . + . + . + . + . + . + . + . + . + . + . + "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies" . + "Uberon multi-species anatomy ontology" . + . + . + . + "anatomy and development" . + . + . + . + . + "https://github.com/obophenotype/uberon/issues" . + "https://lists.sourceforge.net/lists/listinfo/obo-anatomy" . + . + . + . + . + . + "http://purl.obolibrary.org/obo/uberon.owl" . + _:B167d0f7e2ca9c1974e7cda4cfac468ef . + . + . + . + . + . + . + . + . + . "core ontology" . "Uberon" . . "http://purl.obolibrary.org/obo/uberon.owl" . - "Axioms defined within Uberon and to be used in imports for other ontologies" . - "Uberon base ontology" . - "http://purl.obolibrary.org/obo/uberon/uberon-base.owl" . - . - "Uberon edition that excludes external ontologies and most relations" . - "Uberon basic" . - "obo" . - . - "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo" . - "Metazoa"^^ . + "Metazoa"^^ . "Uberon plus all metazoan ontologies" . "Uberon collected metazoan ontology" . . "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl" . . - "Metazoa"^^ . + "Metazoa"^^ . "Uberon and all metazoan ontologies with redundant species-specific terms removed" . "Uberon composite metazoan ontology" . . "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl" . . - "Vertebrata"^^ . + "Vertebrata"^^ . "Uberon composite vertebrate ontology" . . "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl" . . - "The Units Ontology: a tool for integrating units of measurement in science" . -_:Bafc7ede9eae9580284d7d5abde4c9e51 "George Gkoutos" . -_:Bafc7ede9eae9580284d7d5abde4c9e51 "g.gkoutos@gmail.com" . - "http://purl.obolibrary.org/obo/uo.owl" . - "http://purl.obolibrary.org/obo/uo.obo" . + "Axioms defined within Uberon and to be used in imports for other ontologies" . + "Uberon base ontology" . + "http://purl.obolibrary.org/obo/uberon/uberon-base.owl" . + . + "Uberon edition that excludes external ontologies and most relations" . + "Uberon basic" . + "obo" . + . + "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo" . + "UO" . + "active" . + "Metrical units for use in conjunction with PATO" . + "Units of measurement ontology" . + . + . + "phenotype" . + "https://github.com/bio-ontology-research-group/unit-ontology/issues" . + "http://purl.obolibrary.org/obo/uo.owl" . + _:B607a3829b7820161fa15b4b65ea188e4 . + . + . + . + . "http://purl.obolibrary.org/obo/uo.json" . - "UPHENO" . - "active" . - "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology." . - "Unified Phenotype Ontology (uPheno)" . - . - . - . - . - "phenotype" . - "https://github.com/obophenotype/upheno/issues" . - "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" . - "http://purl.obolibrary.org/obo/upheno.owl" . - _:B1473adaef204bf5abd60c4d688982887 . + "http://purl.obolibrary.org/obo/uo.obo" . + "http://purl.obolibrary.org/obo/uo.owl" . + "inactive" . + . + "A manually curated resource for the representation and annotation of metabolic pathways" . + "Unipathway" . + . + . + "biological systems" . + "https://github.com/geneontology/unipathway/issues" . + "http://purl.obolibrary.org/obo/upa.owl" . + _:B1d72c5f4d7a0c6358975df9b34ba33f6 . + . + . + . + "http://purl.obolibrary.org/obo/upa.obo" . + "http://purl.obolibrary.org/obo/upa.owl" . + "UPHENO" . + "active" . + "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology." . + "Unified Phenotype Ontology (uPheno)" . + . + . + . + . + "phenotype" . + "https://github.com/obophenotype/upheno/issues" . + "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" . + "http://purl.obolibrary.org/obo/upheno.owl" . + _:B86df2e95e5a139d9af2a7489b6c03698 . . . . . - "The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics" . - "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species" . - "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition" . -_:B1473adaef204bf5abd60c4d688982887 "James McLaughlin" . -_:B1473adaef204bf5abd60c4d688982887 "jmcl@ebi.ac.uk" . "uPheno 1 is no longer actively maintained, please start using uPheno 2 (see below)." . "uPheno 1 (inactive)" . "http://purl.obolibrary.org/obo/upheno.owl" . @@ -3877,6 +4584,25 @@ _:B1473adaef204bf5abd60c4d688982887 "jmcl@ebi.a "uPheno 2" . "http://purl.obolibrary.org/obo/upheno/v2/upheno.owl" . . + "VariO" . + "orphaned" . + "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations." . + "Variation Ontology" . + . + . + . + . + "biological systems" . + "http://variationontology.org/instructions.shtml" . + "http://purl.obolibrary.org/obo/vario.owl" . + _:Be723a4cbcc79eab435a51cc0e2980ea1 . + . + . + . + "VariO in OBO format" . + "http://purl.obolibrary.org/obo/vario.obo" . + "VariO main release in OWL" . + "http://purl.obolibrary.org/obo/vario.owl" . "VBO" . "active" . . @@ -3888,7 +4614,7 @@ _:B1473adaef204bf5abd60c4d688982887 "jmcl@ebi.a "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues" . "https://groups.google.com/group/VBO-users" . "http://purl.obolibrary.org/obo/vbo.owl" . - _:B3adf8e860b27baf2dff49dde687f18a9 . + _:B8fc86a7d057b15bd900d84a1a655b038 . . . . @@ -3896,15 +4622,17 @@ _:B1473adaef204bf5abd60c4d688982887 "jmcl@ebi.a . . . - "The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization" . -_:B3adf8e860b27baf2dff49dde687f18a9 "Sabrina Toro" . -_:B3adf8e860b27baf2dff49dde687f18a9 "Sabrina@tislab.org" . - "http://purl.obolibrary.org/obo/vbo.owl" . - "http://purl.obolibrary.org/obo/vbo.obo" . "http://purl.obolibrary.org/obo/vbo.json" . - "http://purl.obolibrary.org/obo/vbo/vbo-base.owl" . - "http://purl.obolibrary.org/obo/vbo/vbo-base.obo" . + "http://purl.obolibrary.org/obo/vbo.obo" . + "http://purl.obolibrary.org/obo/vbo.owl" . "http://purl.obolibrary.org/obo/vbo/vbo-base.json" . + "http://purl.obolibrary.org/obo/vbo/vbo-base.obo" . + "http://purl.obolibrary.org/obo/vbo/vbo-base.owl" . + "inactive" . + "Vertebrate Homologous Ontology Group Ontology" . + "anatomy and development" . + . + "http://purl.obolibrary.org/obo/vhog.owl" . "VO" . "active" . "VO is a biomedical ontology in the domain of vaccine and vaccination." . @@ -3915,14 +4643,20 @@ _:B3adf8e860b27baf2dff49dde687f18a9 "Sabrina@ti "health" . "https://github.com/vaccineontology/VO/issues" . "http://purl.obolibrary.org/obo/vo.owl" . - _:B7882c3fc633b5e8ad951217c1c917d42 . + _:Bd448bf96044fae26ffdc73f31958f10a . . . - "Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses" . - "Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology" . -_:B7882c3fc633b5e8ad951217c1c917d42 "Yongqunh He" . -_:B7882c3fc633b5e8ad951217c1c917d42 "yongqunh@med.umich.edu" . "http://purl.obolibrary.org/obo/vo.owl" . + . + "inactive" . + "Vertebrate skeletal anatomy ontology." . + "Vertebrate Skeletal Anatomy Ontology-" . + "anatomy and development" . + _:B7d7dcde984308a17bcd243b5081ce924 . + . + . + . + "http://purl.obolibrary.org/obo/vsao.owl" . "VT" . "active" . "An ontology of traits covering vertebrates" . @@ -3931,11 +4665,9 @@ _:B7882c3fc633b5e8ad951217c1c917d42 "yongqunh@m "phenotype" . "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues" . "http://purl.obolibrary.org/obo/vt.owl" . - _:B510b35931b1a8c992b574144c760bf80 . + _:B93f71b070477e44d22134c579814af72 . . . -_:B510b35931b1a8c992b574144c760bf80 "Carissa Park" . -_:B510b35931b1a8c992b574144c760bf80 "caripark@iastate.edu" . "http://purl.obolibrary.org/obo/vt.owl" . "VTO" . "active" . @@ -3946,17 +4678,15 @@ _:B510b35931b1a8c992b574144c760bf80 "caripark@i "organisms" . "https://github.com/phenoscape/vertebrate-taxonomy-ontology/issues" . "http://purl.obolibrary.org/obo/vto.owl" . - _:B406b4c2f4a623b17d2ad2aacd2540595 . + _:B47d64f50a484c731b25a8bc9cd9c44a0 . . . . -_:B406b4c2f4a623b17d2ad2aacd2540595 "Jim Balhoff" . -_:B406b4c2f4a623b17d2ad2aacd2540595 "balhoff@renci.org" . - "http://purl.obolibrary.org/obo/vto.owl" . "http://purl.obolibrary.org/obo/vto.obo" . + "http://purl.obolibrary.org/obo/vto.owl" . + . "WBbt" . "active" . - . "A structured controlled vocabulary of the anatomy of Caenorhabditis elegans." . "C. elegans Gross Anatomy Ontology" . . @@ -3964,19 +4694,15 @@ _:B406b4c2f4a623b17d2ad2aacd2540595 "balhoff@re "anatomy and development" . "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/issues" . "http://purl.obolibrary.org/obo/wbbt.owl" . - _:B9c2d6f53706ea8f5d092ea1f8b573d18 . + _:B896bf96f65d1dd7caddfe11d88385805 . . . . - "Caenorhabditis" . - "Building a cell and anatomy ontology of Caenorhabditis elegans" . -_:B9c2d6f53706ea8f5d092ea1f8b573d18 "Raymond Lee" . -_:B9c2d6f53706ea8f5d092ea1f8b573d18 "raymond@caltech.edu" . - "http://purl.obolibrary.org/obo/wbbt.owl" . "http://purl.obolibrary.org/obo/wbbt.obo" . + "http://purl.obolibrary.org/obo/wbbt.owl" . + . "WBls" . "active" . - . "A structured controlled vocabulary of the development of Caenorhabditis elegans." . "C. elegans development ontology" . . @@ -3984,18 +4710,15 @@ _:B9c2d6f53706ea8f5d092ea1f8b573d18 "raymond@ca "anatomy and development" . "https://github.com/obophenotype/c-elegans-development-ontology/issues" . "http://purl.obolibrary.org/obo/wbls.owl" . - _:B3c3908ce59f1276333e878ac57dc2577 . + _:B4efc8eb98ea581c2c27a9e60491720ae . . . . - "WormBase: a modern Model Organism Information Resource" . -_:B3c3908ce59f1276333e878ac57dc2577 "Chris Grove" . -_:B3c3908ce59f1276333e878ac57dc2577 "cgrove@caltech.edu" . - "http://purl.obolibrary.org/obo/wbls.owl" . "http://purl.obolibrary.org/obo/wbls.obo" . + "http://purl.obolibrary.org/obo/wbls.owl" . + . "WBPhenotype" . "active" . - . "A structured controlled vocabulary of Caenorhabditis elegans phenotypes" . "C. elegans phenotype" . . @@ -4003,20 +4726,17 @@ _:B3c3908ce59f1276333e878ac57dc2577 "cgrove@cal "phenotype" . "https://github.com/obophenotype/c-elegans-phenotype-ontology/issues" . "http://purl.obolibrary.org/obo/wbphenotype.owl" . - _:B0e23fdc63aa8a57ca3694ca17672222d . + _:Bccdfc93b18039499dbf7bda584fdd0e7 . . . . . - "Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community." . -_:B0e23fdc63aa8a57ca3694ca17672222d "Chris Grove" . -_:B0e23fdc63aa8a57ca3694ca17672222d "cgrove@caltech.edu" . - "http://purl.obolibrary.org/obo/wbphenotype.owl" . "http://purl.obolibrary.org/obo/wbphenotype.obo" . + "http://purl.obolibrary.org/obo/wbphenotype.owl" . "http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-base.owl" . + . "XAO" . "active" . - . "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis." . "Xenopus Anatomy Ontology" . . @@ -4025,23 +4745,30 @@ _:B0e23fdc63aa8a57ca3694ca17672222d "cgrove@cal "anatomy and development" . "https://github.com/xenopus-anatomy/xao/issues" . "http://purl.obolibrary.org/obo/xao.owl" . - _:Bfb6c105293d98dedb185b931d37130f1 . + _:B155bb05b78dc89183dc1d153ac3627e2 . . . . - "Xenopus" . - "An ontology for Xenopus anatomy and development." . - "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase." . -_:Bfb6c105293d98dedb185b931d37130f1 "Erik Segerdell" . -_:Bfb6c105293d98dedb185b931d37130f1 "Erik.Segerdell@cchmc.org" . - "http://purl.obolibrary.org/obo/xao.owl" . "http://purl.obolibrary.org/obo/xao.obo" . - "RGD Ontology Browser" . - "RGD" . -_:B28a3fc170bd08f717c7951352e0eb0db "Jennifer Smith" . -_:B28a3fc170bd08f717c7951352e0eb0db "jrsmith@mcw.edu" . - "http://purl.obolibrary.org/obo/xco.owl" . + "http://purl.obolibrary.org/obo/xao.owl" . + "XCO" . + "active" . + "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms." . + "Experimental condition ontology" . + . + . + . + "health" . + "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues" . + . + "http://purl.obolibrary.org/obo/xco.owl" . + _:B19890d84add7fdae834acb2d259a1291 . + . + . + . + . "http://purl.obolibrary.org/obo/xco.obo" . + "http://purl.obolibrary.org/obo/xco.owl" . "XLMOD" . "active" . "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry." . @@ -4051,15 +4778,14 @@ _:B28a3fc170bd08f717c7951352e0eb0db "jrsmith@mc "https://github.com/HUPO-PSI/xlmod-CV/issues" . "psidev-ms-vocab@lists.sourceforge.net" . "http://purl.obolibrary.org/obo/xlmod.owl" . - _:Baf83d20e595e5e59d44ca8a29187fa33 . + _:Bf7fe0ba8ed1258d2622eee60437bfaa0 . . . . . -_:Baf83d20e595e5e59d44ca8a29187fa33 "Lutz Fischer" . -_:Baf83d20e595e5e59d44ca8a29187fa33 "lutz.fischer@tu-berlin.de" . "http://purl.obolibrary.org/obo/xlmod.obo" . "http://purl.obolibrary.org/obo/xlmod.owl" . + . "XPO" . "active" . . @@ -4070,7 +4796,6 @@ _:Baf83d20e595e5e59d44ca8a29187fa33 "lutz.fisch . . . - . "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis." . "Xenopus Phenotype Ontology" . . @@ -4078,24 +4803,44 @@ _:Baf83d20e595e5e59d44ca8a29187fa33 "lutz.fisch "phenotype" . "https://github.com/obophenotype/xenopus-phenotype-ontology/issues" . "http://purl.obolibrary.org/obo/xpo.owl" . - _:Ba843d57c3958c2061c0fd72b006186c7 . + _:Bbdbd5a2b960a06f78988722321d7f4e4 . . . . - "The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development." . -_:Ba843d57c3958c2061c0fd72b006186c7 "Erik Segerdell" . -_:Ba843d57c3958c2061c0fd72b006186c7 "Erik.Segerdell@cchmc.org" . - "http://purl.obolibrary.org/obo/xpo.owl" . "http://purl.obolibrary.org/obo/xpo.obo" . - "Danio" . -_:B109eb1901ab3365189d65806ea41c164 "Yvonne Bradford" . -_:B109eb1901ab3365189d65806ea41c164 "ybradford@zfin.org" . + "http://purl.obolibrary.org/obo/xpo.owl" . + . + "inactive" . + "Yeast phenotypes" . + "phenotype" . + _:B2312b9ccf8d91194bdd6d67a242478db . + . + . + "inactive" . + "Maize gross anatomy" . + "anatomy and development" . + _:B30ebe985e46541c8d8dc3486820c4e6f . + . + . + "ZECO" . + "active" . + "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN" . + "Zebrafish Experimental Conditions Ontology" . + . + "environment" . + "https://github.com/ybradford/zebrafish-experimental-conditions-ontology/issues" . + "http://purl.obolibrary.org/obo/zeco.owl" . + _:Bbefeeb481f489a217f6020d474955d05 . + . + . + . + . + "http://purl.obolibrary.org/obo/zeco.json" . "http://purl.obolibrary.org/obo/zeco.obo" . "http://purl.obolibrary.org/obo/zeco.owl" . - "http://purl.obolibrary.org/obo/zeco.json" . + . "ZFA" . "active" . - . "A structured controlled vocabulary of the anatomy and development of the Zebrafish" . "Zebrafish anatomy and development ontology" . . @@ -4103,33 +4848,28 @@ _:B109eb1901ab3365189d65806ea41c164 "ybradford@ "anatomy and development" . "https://github.com/cerivs/zebrafish-anatomical-ontology/issues" . "http://purl.obolibrary.org/obo/zfa.owl" . - _:Bc9086906921809de109c2c32480c794b . + _:B38f948d2e1f8ee10c37c211e4da0dd6f . . . . - "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio." . -_:Bc9086906921809de109c2c32480c794b "Ceri Van Slyke" . -_:Bc9086906921809de109c2c32480c794b "van_slyke@zfin.org" . - "http://purl.obolibrary.org/obo/zfa.owl" . "http://purl.obolibrary.org/obo/zfa.obo" . + "http://purl.obolibrary.org/obo/zfa.owl" . + . "ZFS" . "active" . - . "Developmental stages of the Zebrafish" . "Zebrafish developmental stages ontology" . . "anatomy and development" . "https://github.com/cerivs/zebrafish-anatomical-ontology/issues" . "http://purl.obolibrary.org/obo/zfs.owl" . - _:B3e7f7e0be327f2ce804f39b48edc9bc7 . + _:B172d4399912010b9debe412018bbfe9b . . . . . -_:B3e7f7e0be327f2ce804f39b48edc9bc7 "Ceri Van Slyke" . -_:B3e7f7e0be327f2ce804f39b48edc9bc7 "van_slyke@zfin.org" . - "http://purl.obolibrary.org/obo/zfs.owl" . "http://purl.obolibrary.org/obo/zfs.obo" . + "http://purl.obolibrary.org/obo/zfs.owl" . "ZP" . "active" . . @@ -4145,969 +4885,229 @@ _:B3e7f7e0be327f2ce804f39b48edc9bc7 "van_slyke@ "phenotype" . "https://github.com/obophenotype/zebrafish-phenotype-ontology/issues" . "http://purl.obolibrary.org/obo/zp.owl" . - _:B8c727a1a25feb057128b9039facaf51e . + _:B530bb9f06f40e2fba6808379fac2a078 . . . . -_:B8c727a1a25feb057128b9039facaf51e "Yvonne Bradford" . -_:B8c727a1a25feb057128b9039facaf51e "ybradford@zfin.org" . - "http://purl.obolibrary.org/obo/zp.owl" . "http://purl.obolibrary.org/obo/zp.obo" . + "http://purl.obolibrary.org/obo/zp.owl" . + "RGD Ontology Browser" . + "RGD" . + "RGD Ontology Browser" . + "RGD" . + "RGD Ontology Browser" . + "RGD" . + "RGD Ontology Browser" . + "RGD" . + "Gene Ontology AmiGO 2 Browser" . + "RGD" . + "RGD Ontology Browser" . + "RGD" . "Apache 2.0 License" . -_:B92991893ee3e3f99971dc2d2783afd57 "Clair Kronk" . -_:B92991893ee3e3f99971dc2d2783afd57 "kronkcj@mail.uc.edu" . - "http://purl.obolibrary.org/obo/gsso.owl" . - "http://purl.obolibrary.org/obo/gsso.obo" . - "http://purl.obolibrary.org/obo/gsso.json" . - "hpo" . - "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." . - "The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease." . - "The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data." . - "Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources." . + "EBI CHEBI Browser" . + "CHEBI" . + "NCBI Taxonomy Browser" . + "NCBI" . + "The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments." . + "Virtual Fly Brain" . + "VFB" . + "BioPortal Ontology Browser" . + "BioPortal" . + "BioPortal Browser" . + "BioPortal" . + "BioPortal" . + "BioPortal" . + "BioPortal Ontology Browser" . + "BioPortal" . + "BioPortal Ontology Browser" . + "BioPortal" . + "BioPortal Browser" . + "BioPortal" . + "BioPortal Ontology Browser" . + "BioPortal" . + "BioPortal Ontology Browser" . + "BioPortal" . + "BioPortal Ontology Browser" . + "BioPortal" . + . + "CC BY 2.0" . + . + "CC BY 3.0" . + . + "CC BY 4.0" . + . + "CC0 1.0" . + "DO Browser" . + "DO" . + "DO Browser" . + "DO" . + "The Ontology of Biological Attributes (OBA) - computational traits for the life sciences" . + "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)" . + "An ontology to clarify homology-related concepts" . + "The Teleost Taxonomy Ontology" . + "Ontology for the Avida digital evolution platform" . + "Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)" . + "Mondo: Integrating Disease Terminology Across Communities" . + "ChEBI: re-engineered for a sustainable future" . + "The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics" . + "The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization" . + "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes" . + "The environment ontology: contextualising biological and biomedical entities" . + "Development and application of an Interaction Network Ontology for literature mining of vaccine-associated gene-gene interactions" . + "Toward a standard formal semantic representation of the model card report" . + "An ontology for microbial phenotypes" . + "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation" . + "The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation" . + "Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request" . + "Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies" . + "Extension of Roles in the ChEBI Ontology" . + "Establishing a Common Nutritional Vocabulary - From Food Production to Diet" . + "The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data" . + "Initial Implementation of a Comparative Data Analysis Ontology" . + "OntONeo: The Obstetric and Neonatal Ontology" . + "Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal Domain" . + "EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report" . + "LABO: An Ontology for Laboratory Test Prescription and Reporting" . + "GNOme - Glycan Naming and Subsumption Ontology" . + "Malaria study data integration and information retrieval based on OBO Foundry ontologies." . + "GNOme Glycan Composition Browser" . + "Composition Browser" . + "GNOme Glycan Structure Browser" . + "Structure Browser" . + "NIH R01-HG004838" . + "NIH P41EB023912" . + "NIH R35GM119771" . "JAX HPO Browser" . "HPO" . - "Monarch Phenotype Page" . - "Monarch" . -_:B9135472cdd18c52fa7856953cd9b10f3 "Sebastian Koehler" . -_:B9135472cdd18c52fa7856953cd9b10f3 "dr.sebastian.koehler@gmail.com" . - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format." . - "Official HPO release in obographs JSON format" . - "json" . - "http://purl.obolibrary.org/obo/hp.json" . - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." . - "Official HPO release in OBO format" . - "obo" . - "http://purl.obolibrary.org/obo/hp.obo" . - "Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML)." . - "Official HPO release in OWL" . - "owl" . - "http://purl.obolibrary.org/obo/hp.owl" . - "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format." . - "HPO base release in obographs JSON format" . - "obo" . - "http://purl.obolibrary.org/obo/hp/hp-base.json" . - "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format." . - "HPO base release in OBO format" . - "obo" . - "http://purl.obolibrary.org/obo/hp/hp-base.obo" . - "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format." . - "HPO base release in OWL format" . - "owl" . - "http://purl.obolibrary.org/obo/hp/hp-base.owl" . - "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format." . - "HPO full release in obographs JSON format" . - "json" . - "http://purl.obolibrary.org/obo/hp/hp-full.json" . - "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format." . - "HPO full release in OBO format" . - "obo" . - "http://purl.obolibrary.org/obo/hp/hp-full.obo" . - "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format." . - "HPO full release in OWL format" . - "owl" . - "http://purl.obolibrary.org/obo/hp/hp-full.owl" . - "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format." . - "HPO International Edition in obographs JSON format" . - "json" . - "http://purl.obolibrary.org/obo/hp/hp-international.json" . - "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format." . - "HPO International Edition in OBO format" . - "obo" . - "http://purl.obolibrary.org/obo/hp/hp-international.obo" . - "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format." . - "HPO International Edition in OWL format" . - "owl" . - "http://purl.obolibrary.org/obo/hp/hp-international.owl" . - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format." . - "HPO simple, manually classified, without imports in obographs JSON format" . - "json" . - "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json" . - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." . - "HPO simple, manually classified, without imports in OBO format" . - "obo" . - "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.obo" . - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format." . - "HPO simple, manually classified, without imports in OWL format" . - "owl" . - "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl" . - "https://hpo.jax.org/app/data/annotations" . - "HPO Annotations (Phenotype to Disease)" . - "tsv" . - "http://purl.obolibrary.org/obo/hp/phenotype.hpoa" . - "https://hpo.jax.org/app/data/annotations" . - "HPO phenotype to gene annotations" . - "tsv" . - "http://purl.obolibrary.org/obo/hp/phenotype_to_genes.txt" . - "https://hpo.jax.org/app/data/annotations" . - "HPO gene to phenotype annotations" . - "tsv" . - "http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt" . - "KISAO" . - "active" . - "A classification of algorithms for simulating biology, their parameters, and their outputs" . - "Kinetic Simulation Algorithm Ontology" . - . - . - "simulation" . - . - . - "https://github.com/SED-ML/KiSAO/issues" . - . - . - . - "http://purl.obolibrary.org/obo/kisao.owl" . - _:Bafcf7b96d6eb69d7ff5900cd254551a6 . - . - . - "Artistic License 2.0" . - "Controlled vocabularies and semantics in systems biology" . - "NIH P41EB023912" . - "NIH R35GM119771" . + "hpo" . + "INCF KnowledgeSpace Portal" . + "KnowledgeSpace" . + "Monarch Initiative Disease Browser" . + "Monarch" . + "OntoBee Browser" . + "OntoBee" . + "Ontoavida HTML Browser" . + "Human-readable (HTML)" . + "RGD MP Browser" . + "RGD" . + "NIH P41-HG002273" . + "NIH R24-OD011883" . + "TOXPILOT" . + "TOXPILOT" . "Ontology Lookup Service" . "OLS" . - "BioPortal" . - "BioPortal" . - "OntoBee" . - "OntoBee" . -_:Bafcf7b96d6eb69d7ff5900cd254551a6 "Jonathan Karr" . -_:Bafcf7b96d6eb69d7ff5900cd254551a6 "jonrkarr@gmail.com" . - "http://purl.obolibrary.org/obo/kisao.owl" . -_:B2fbbda2e8e70a0ed218f453d1c7c4417 "Rahuman Sheriff" . -_:B2fbbda2e8e70a0ed218f453d1c7c4417 "sheriff@ebi.ac.uk" . - "http://purl.obolibrary.org/obo/sbo.owl" . - "SCDO" . - "active" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease." . - "Sickle Cell Disease Ontology" . - . - . - . - . - "health" . - "https://github.com/scdodev/scdo-ontology/issues" . - "http://purl.obolibrary.org/obo/scdo.owl" . - _:Bcfcd263477e5d9e22c021396098d6a7c . - . - . - . - "EUPATH" . - "inactive" . - "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org)." . - "VEuPathDB ontology" . - . - . - "organisms" . - "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues" . - "http://purl.obolibrary.org/obo/eupath.owl" . - _:Bb64509173bbb7d674d5eabc93c507e14 . - . - . - "inactive" . - "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it." . - "Malaria Ontology" . - . - "health" . - "http://purl.obolibrary.org/obo/idomal.owl" . - _:Bb8b353cb0a502d9e6f4292db9282c123 . - . - . - . + "ECO Browser" . + "ECO" . "GPL-3.0" . - "The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation." . - "The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications." . + "MGI MP Browser" . + "MGI" . + "Mondo: Unifying diseases for the world, by the world" . + "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium" . + "Using ontologies to describe mouse phenotypes" . + "The Sequence Ontology: a tool for the unification of genome annotations." . + "FlyBase: anatomical data, images and queries" . + "Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study" . + "The foundational model of anatomy in OWL: Experience and perspectives" . + "An anatomy ontology to represent biological knowledge in Dictyostelium discoideum" . + "Building a cell and anatomy ontology of Caenorhabditis elegans" . + "The PSI-MOD community standard for representation of protein modification data" . + "Translating the Foundational Model of Anatomy into OWL" . + "An ontology for Xenopus anatomy and development." . + "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." . + "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database" . + "New mutant phenotype data curation system in the Saccharomyces Genome Database" . + "Evolution of the Sequence Ontology terms and relationships." . + "The teleost anatomy ontology: anatomical representation for the genomics age" . + "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources" . + "A gross anatomy ontology for hymenoptera" . + "Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community." . + "Toward an ontological treatment of disease and diagnosis" . + "The Rat Genome Database pathway portal." . + "Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology" . + "The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web" . + "Controlled vocabularies and semantics in systems biology" . + "UniPathway: a resource for the exploration and annotation of metabolic pathways" . + "The Virtual Fly Brain Browser and Query Interface" . + "Uberon, an integrative multi-species anatomy ontology" . + "A strategy for building neuroanatomy ontologies" . + "Three ontologies to define phenotype measurement data." . + "Ontologies as integrative tools for plant science." . + "The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data" . + "A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20)." . + "The Units Ontology: a tool for integrating units of measurement in science" . + "The plant ontology as a tool for comparative plant anatomy and genomic analyses." . + "Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses" . + "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary." . + "FYPO: The Fission Yeast Phenotype Ontology." . + "EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update" . + "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." . + "The Drosophila phenotype ontology." . + "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase." . + "The Drosophila anatomy ontology" . + "Variation Ontology for annotation of variation effects and mechanisms" . + "Analyzing gene expression data in mice with the Neuro Behavior Ontology" . + "The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data." . + "Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD." . + "The pathway ontology - updates and applications." . + "Variation ontology: annotator guide" . + "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio." . + "Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon" . + "Standardized description of scientific evidence using the Evidence Ontology (ECO)" . + "The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation" . + "Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology." . + "The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology" . + "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data" . + "Types and effects of protein variations" . + "Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens" . + "CLO: The Cell Line Ontology" . + "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations" . + "Biomarkers in the Ontology for General Medical Science" . + "The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease." . + "DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug–Drug Interactions and Their Mechanisms." . + "Mouse Anatomy Ontologies: Enhancements and Tools for Exploring and Integrating Biomedical Data" . + "ChEBI in 2016: Improved services and an expanding collection of metabolites." . + "The Ontology for Biomedical Investigations" . + "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability." . + "The ontology of medically related social entities: recent developments" . + "The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants" . + "Protein Ontology (PRO): enhancing and scaling up the representation of protein entities" . + "The anatomy of phenotype ontologies: principles, properties and applications" . + "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." . + "A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog" . + "ONS: an ontology for a standardized description of interventions and observational studies in nutrition" . + "Victors: a web-based knowledge base of virulence factors in human and animal pathogens" . + "ECO, the Evidence & Conclusion Ontology: community standard for evidence information." . + "Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources." . + "FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration" . + "WormBase: a modern Model Organism Information Resource" . + "CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database." . "The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation." . -_:Bcfcd263477e5d9e22c021396098d6a7c "Jade Hotchkiss" . -_:Bcfcd263477e5d9e22c021396098d6a7c "giant.plankton@gmail.com" . - "http://purl.obolibrary.org/obo/scdo.owl" . - "http://purl.obolibrary.org/obo/scdo.obo" . - "orphaned" . - "An ontology of physico-chemical methods and properties." . - "Physico-chemical methods and properties" . - "chemistry and biochemistry" . - "http://purl.obolibrary.org/obo/fix.owl" . - _:B70d1ec26189f78f4b7a86b1323862fa3 . - . - . - . -_:B70d1ec26189f78f4b7a86b1323862fa3 "chEBI" . - "http://purl.obolibrary.org/obo/fix.owl" . - "http://purl.obolibrary.org/obo/fix.obo" . - "MAMO" . - "orphaned" . - "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features." . - "Mathematical modeling ontology" . - . - "simulation" . - "http://sourceforge.net/p/mamo-ontology/tickets/" . - "http://purl.obolibrary.org/obo/mamo.owl" . - . - . - "http://purl.obolibrary.org/obo/mamo.owl" . - "orphaned" . - "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time." . - "Physico-chemical process" . - "chemistry and biochemistry" . - "http://purl.obolibrary.org/obo/rex.owl" . - . - "http://purl.obolibrary.org/obo/rex.owl" . - "SIBO" . - "orphaned" . - "Social Behavior in insects" . - "Social Insect Behavior Ontology" . - . - "biological systems" . - "https://github.com/obophenotype/sibo/issues" . - "http://purl.obolibrary.org/obo/sibo.owl" . - _:B590f5111bf84b70aa9e8a2062f1693e4 . - . - . - . -_:B590f5111bf84b70aa9e8a2062f1693e4 "Chris Mungall" . -_:B590f5111bf84b70aa9e8a2062f1693e4 "cjmungall@lbl.gov" . - "http://purl.obolibrary.org/obo/sibo.owl" . - "http://purl.obolibrary.org/obo/sibo.obo" . - "VariO" . - "orphaned" . - "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations." . - "Variation Ontology" . - . - . - . - . - "biological systems" . - "http://variationontology.org/instructions.shtml" . - "http://purl.obolibrary.org/obo/vario.owl" . - _:B6002722bfa578abd3629b504a25cefd6 . - . - . - . - "Variation Ontology for annotation of variation effects and mechanisms" . - "Variation ontology: annotator guide" . - "Types and effects of protein variations" . -_:B6002722bfa578abd3629b504a25cefd6 "Mauno Vihinen" . -_:B6002722bfa578abd3629b504a25cefd6 "mauno.vihinen@med.lu.se" . - "VariO main release in OWL" . - "http://purl.obolibrary.org/obo/vario.owl" . - "VariO in OBO format" . - "http://purl.obolibrary.org/obo/vario.obo" . - "Malaria study data integration and information retrieval based on OBO Foundry ontologies." . -_:Bb64509173bbb7d674d5eabc93c507e14 "Jie Zheng" . -_:Bb64509173bbb7d674d5eabc93c507e14 "jiezhen@med.umich.edu" . - "http://purl.obolibrary.org/obo/eupath.owl" . - "MFMO" . - "inactive" . - . - . - "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors." . - "Mammalian Feeding Muscle Ontology" . - . - "anatomy and development" . - "https://github.com/RDruzinsky/feedontology/issues" . - "http://purl.obolibrary.org/obo/mfmo.owl" . - _:B1b8d8c7d7e89179addf917b2a5178403 . - . - . -_:B1b8d8c7d7e89179addf917b2a5178403 "Robert Druzinsky" . -_:B1b8d8c7d7e89179addf917b2a5178403 "druzinsk@uic.edu" . - "http://purl.obolibrary.org/obo/mfmo.owl" . -_:Bac9ebbc4d5964be3d854aa2171c9cfbc "Carrine Blank" . -_:Bac9ebbc4d5964be3d854aa2171c9cfbc "carrine.blank@umontana.edu" . - "http://purl.obolibrary.org/obo/micro.owl" . - "OGSF" . - "inactive" . - "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process." . - "Ontology of Genetic Susceptibility Factor" . - . - "investigations" . - "https://github.com/linikujp/OGSF/issues" . - "http://purl.obolibrary.org/obo/ogsf.owl" . - _:B8373a2bdc0c847daa2274e3abd72a8e9 . - . - . -_:B8373a2bdc0c847daa2274e3abd72a8e9 "Asiyah Yu Lin" . -_:B8373a2bdc0c847daa2274e3abd72a8e9 "linikujp@gmail.com" . - "http://purl.obolibrary.org/obo/ogsf.owl" . - "OlatDv" . - "inactive" . - "Life cycle stages for Medaka" . - "Medaka Developmental Stages" . - . - "anatomy and development" . - "https://github.com/obophenotype/developmental-stage-ontologies/issues" . - "http://purl.obolibrary.org/obo/olatdv.owl" . - _:B525323c4e3f8d04fa368350bcd692d41 . - . - . - . - . -_:B525323c4e3f8d04fa368350bcd692d41 "Frédéric Bastian" . -_:B525323c4e3f8d04fa368350bcd692d41 "frederic.bastian@unil.ch" . - "http://purl.obolibrary.org/obo/olatdv.obo" . - "http://purl.obolibrary.org/obo/olatdv.owl" . - "PdumDv" . - "inactive" . - "Life cycle stages for Platynereis dumerilii" . - "Platynereis Developmental Stages" . - . - "anatomy and development" . - "https://github.com/obophenotype/developmental-stage-ontologies/issues" . - "http://purl.obolibrary.org/obo/pdumdv.owl" . - _:B4dc07fd4f8c54487c91ba986b78fd056 . - . - . - . - . -_:B4dc07fd4f8c54487c91ba986b78fd056 "Frédéric Bastian" . -_:B4dc07fd4f8c54487c91ba986b78fd056 "frederic.bastian@unil.ch" . - "http://purl.obolibrary.org/obo/pdumdv.owl" . - "http://purl.obolibrary.org/obo/pdumdv.obo" . - "AEO" . - "inactive" . - "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology" . - "Anatomical Entity Ontology" . - . - "anatomy and development" . - "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" . - "http://purl.obolibrary.org/obo/aeo.owl" . - _:B0eb4b8fdb770f8eaf67fc0dab6d97e9e . - . - . -_:B0eb4b8fdb770f8eaf67fc0dab6d97e9e "Jonathan Bard" . -_:B0eb4b8fdb770f8eaf67fc0dab6d97e9e "J.Bard@ed.ac.uk" . - "http://purl.obolibrary.org/obo/aeo.owl" . - "inactive" . - . - "An anatomical and developmental ontology for cephalopods" . - "Cephalopod Ontology" . - . - "anatomy and development" . - "https://github.com/obophenotype/cephalopod-ontology/issues" . - "http://purl.obolibrary.org/obo/ceph.owl" . - _:Bf111e05af0092d902a80dec5f8edbc85 . - . - . - . - "Cephalopod" . -_:Bf111e05af0092d902a80dec5f8edbc85 "Chris Mungall" . -_:Bf111e05af0092d902a80dec5f8edbc85 "cjmungall@lbl.gov" . - "main version" . - "http://purl.obolibrary.org/obo/ceph.owl" . - "oboformat edition" . - "http://purl.obolibrary.org/obo/ceph.obo" . - "inactive" . - . - . - . - . - "A structured controlled vocabulary of stage-specific anatomical structures of the developing human." . - "Human developmental anatomy, abstract" . - . - . - "anatomy and development" . - "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" . - "http://purl.obolibrary.org/obo/ehdaa2.owl" . - _:B9c0ecb6b19a7f7cf737c4a8e522f4834 . - . - . - . - "A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20)." . -_:B9c0ecb6b19a7f7cf737c4a8e522f4834 "Jonathan Bard" . -_:B9c0ecb6b19a7f7cf737c4a8e522f4834 "J.Bard@ed.ac.uk" . - "http://purl.obolibrary.org/obo/ehdaa2.owl" . - "http://purl.obolibrary.org/obo/ehdaa2.obo" . - "FMA" . - "inactive" . - . - "This is currently a slimmed down version of FMA" . - "Foundational Model of Anatomy Ontology (subset)" . - . - . - . - . - "anatomy and development" . - "https://bitbucket.org/uwsig/fma/issues" . - "http://purl.obolibrary.org/obo/fma.owl" . - _:B75f24c0f0b37da0efb3e0d52c99fa7a0 . - . - . - . - "Translating the Foundational Model of Anatomy into OWL" . - "The foundational model of anatomy in OWL: Experience and perspectives" . - "Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study" . -_:B75f24c0f0b37da0efb3e0d52c99fa7a0 "Onard Mejino" . -_:B75f24c0f0b37da0efb3e0d52c99fa7a0 "mejino@u.washington.edu" . - "http://purl.obolibrary.org/obo/fma.owl" . -_:Bb8b353cb0a502d9e6f4292db9282c123 "Pantelis Topalis" . -_:Bb8b353cb0a502d9e6f4292db9282c123 "topalis@imbb.forth.gr" . - "http://purl.obolibrary.org/obo/idomal.owl" . - "http://purl.obolibrary.org/obo/idomal.obo" . - "inactive" . - . - "Application ontology for entities related to insecticide resistance in mosquitos" . - "Mosquito insecticide resistance" . - "environment" . - "http://purl.obolibrary.org/obo/miro.owl" . - _:B92ca927923ac48e381e36f4edf549921 . - . - . - "Anopheles" . -_:B92ca927923ac48e381e36f4edf549921 "Christos (Kitsos) Louis" . -_:B92ca927923ac48e381e36f4edf549921 "louis@imbb.forth.gr" . - "http://purl.obolibrary.org/obo/miro.owl" . - "http://purl.obolibrary.org/obo/miro.obo" . - "inactive" . - "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures." . - "RNA ontology" . - . - "chemistry and biochemistry" . - "https://github.com/BGSU-RNA/rnao/issues" . - . - "http://purl.obolibrary.org/obo/rnao.owl" . - _:Bf2906085bfbcc830c338f6147e206f21 . - . - . - . - "RNA Ontology jOWL Browser" . - "RNAO" . -_:Bf2906085bfbcc830c338f6147e206f21 "Colin Batchelor" . -_:Bf2906085bfbcc830c338f6147e206f21 "BatchelorC@rsc.org" . - "http://purl.obolibrary.org/obo/rnao.owl" . - "http://purl.obolibrary.org/obo/rnao.obo" . - "inactive" . - . - "The anatomy of the Tick, Families: Ixodidae, Argassidae" . - "Tick Anatomy Ontology" . - . - "anatomy and development" . - "http://purl.obolibrary.org/obo/tads.owl" . - _:Bea107d995d625f5868d156e8c1ad2715 . - . - . - . - "Ixodidae" . -_:Bea107d995d625f5868d156e8c1ad2715 "Daniel Sonenshine" . -_:Bea107d995d625f5868d156e8c1ad2715 "dsonensh@odu.edu" . - "http://purl.obolibrary.org/obo/tads.owl" . - "http://purl.obolibrary.org/obo/tads.obo" . - "inactive" . - . - "A structured controlled vocabulary of the anatomy of mosquitoes." . - "Mosquito gross anatomy ontology" . - . - "anatomy and development" . - "http://purl.obolibrary.org/obo/tgma.owl" . - _:Be12ee9a9de89efe514e56b08f937ea20 . - . - . - . -_:Be12ee9a9de89efe514e56b08f937ea20 "Pantelis Topalis" . -_:Be12ee9a9de89efe514e56b08f937ea20 "topalis@imbb.forth.gr" . - "http://purl.obolibrary.org/obo/tgma.owl" . - "http://purl.obolibrary.org/obo/tgma.obo" . - "inactive" . - . - "A manually curated resource for the representation and annotation of metabolic pathways" . - "Unipathway" . - . - . - "biological systems" . - "https://github.com/geneontology/unipathway/issues" . - "http://purl.obolibrary.org/obo/upa.owl" . - _:B5a2a3a8934304d02033d4edf9b713b4c . - . - . - . - "UniPathway: a resource for the exploration and annotation of metabolic pathways" . -_:B5a2a3a8934304d02033d4edf9b713b4c "Anne Morgat" . -_:B5a2a3a8934304d02033d4edf9b713b4c "Anne.Morgat@sib.swiss" . - "http://purl.obolibrary.org/obo/upa.owl" . - "http://purl.obolibrary.org/obo/upa.obo" . - "inactive" . - . - "Amphibian gross anatomy" . - "anatomy and development" . - _:B1545b8202023751925f507ececc0d793 . - . - "Amphibia" . -_:B1545b8202023751925f507ececc0d793 "David Blackburn" . -_:B1545b8202023751925f507ececc0d793 "david.c.blackburn@gmail.com" . - "inactive" . - "Animal natural history and life history" . - "organisms" . - _:Ba75382a8d1a2d10bea44525fba49840d . - . -_:Ba75382a8d1a2d10bea44525fba49840d "Animal Diversity Web technical staff" . -_:Ba75382a8d1a2d10bea44525fba49840d "adw_geeks@umich.edu" . - "inactive" . - "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events" . - "Adverse Event Reporting Ontology" . - . - "health" . - _:B07d42d32aa7bb4685a01fbe118f4a264 . - . - . -_:B07d42d32aa7bb4685a01fbe118f4a264 "Melanie Courtot" . -_:B07d42d32aa7bb4685a01fbe118f4a264 "mcourtot@gmail.com" . - "http://purl.obolibrary.org/obo/aero.owl" . - "inactive" . - . - "Amphibian taxonomy" . - "organisms" . - _:B4395e0ea284c8725fbf47c51c6c817eb . - . -_:B4395e0ea284c8725fbf47c51c6c817eb "David Blackburn" . -_:B4395e0ea284c8725fbf47c51c6c817eb "david.c.blackburn@gmail.com" . - "inactive" . - "An application ontology built for beta cell genomics studies." . - "Beta Cell Genomics Ontology" . - . - "anatomy and development" . - "https://github.com/obi-bcgo/bcgo/issues" . - _:B88937e32cc9c5cd35bdbf00420ff6ea4 . - . - . -_:B88937e32cc9c5cd35bdbf00420ff6ea4 "Jie Zheng" . -_:B88937e32cc9c5cd35bdbf00420ff6ea4 "jiezheng@pennmedicine.upenn.edu" . - "http://purl.obolibrary.org/obo/bcgo.owl" . - "inactive" . - . - "Bilateria anatomy" . - "anatomy and development" . - _:B6543ae70429c7f3c664ff3e7c76e50e4 . - . - . - "Bilateria" . -_:B6543ae70429c7f3c664ff3e7c76e50e4 "Thorsten Henrich" . -_:B6543ae70429c7f3c664ff3e7c76e50e4 "henrich@embl.de" . - "http://purl.obolibrary.org/obo/bila.owl" . - "inactive" . - "Gene Regulation Ontology" . - "chemistry and biochemistry" . - _:Bc71ac3beb936b0c4aae2bfc5f792443c . - . -_:Bc71ac3beb936b0c4aae2bfc5f792443c "Vivian Lee" . -_:Bc71ac3beb936b0c4aae2bfc5f792443c "vlee@ebi.ac.uk" . -_:B9115bd49c129de887536f790320165c9 "Melissa Haendel" . -_:B9115bd49c129de887536f790320165c9 "haendel@ohsu.edu" . - "http://purl.obolibrary.org/obo/caro.owl" . - "inactive" . - "CranioMaxilloFacial ontology" . - "health" . - _:B611d364285d0ed75ab8dfc4044060f7b . - . -_:B611d364285d0ed75ab8dfc4044060f7b "Mark Engelstad" . -_:B611d364285d0ed75ab8dfc4044060f7b "engelsta@ohsu.edu" . - "inactive" . - . - "Dendritic cell" . - "anatomy and development" . - _:Be9f709f433879bc25ddc683054758009 . - . -_:Be9f709f433879bc25ddc683054758009 "Lindsay Cowell" . -_:Be9f709f433879bc25ddc683054758009 "Lindsay.Cowell@utsouthwestern.edu" . - "inactive" . - "A formal represention for drug-drug interactions knowledge." . - "The Drug-Drug Interactions Ontology" . - . - . - "health" . - "https://github.com/labda/DINTO/issues" . - _:B621a49e269b52d6a16197b290df6b77e . - . - . - "DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug–Drug Interactions and Their Mechanisms." . -_:B621a49e269b52d6a16197b290df6b77e "Maria Herrero" . -_:B621a49e269b52d6a16197b290df6b77e "maria.herrero@kcl.ac.uk" . - "http://purl.obolibrary.org/obo/dinto.owl" . - "inactive" . - . - "Human developmental anatomy, timed version" . - "anatomy and development" . - _:B593369aa947f845cc153b36c4675b562 . - . -_:B593369aa947f845cc153b36c4675b562 "Jonathan Bard" . -_:B593369aa947f845cc153b36c4675b562 "J.Bard@ed.ac.uk" . - "inactive" . - . - "Human developmental anatomy, abstract version" . - "anatomy and development" . - _:B11a958139ca087d4fdf0433890e3921a . -_:B11a958139ca087d4fdf0433890e3921a "Jonathan Bard" . -_:B11a958139ca087d4fdf0433890e3921a "J.Bard@ed.ac.uk" . - "inactive" . - . - "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)." . - "Mouse gross anatomy and development, timed" . - "anatomy and development" . - _:B3e016aeaae0e158c07747dd1ced52d2d . - . - . - . -_:B3e016aeaae0e158c07747dd1ced52d2d "Terry Hayamizu" . -_:B3e016aeaae0e158c07747dd1ced52d2d "Terry.Hayamizu@jax.org" . - "http://purl.obolibrary.org/obo/emap.owl" . - "Ontologies as integrative tools for plant science." . -_:B7622a31d5e97c6c084951a700545bff5 "Pankaj Jaiswal" . -_:B7622a31d5e97c6c084951a700545bff5 "jaiswalp@science.oregonstate.edu" . - "http://purl.obolibrary.org/obo/eo.owl" . - "http://purl.obolibrary.org/obo/eo.obo" . - "inactive" . - "An ontology designed to support the semantic annotation of epidemiology resources" . - "Epidemiology Ontology" . - "health" . - . - . - "http://purl.obolibrary.org/obo/epo.owl" . - "inactive" . - "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens." . - "eagle-i resource ontology" . - . - "information" . - _:B8670cfa3f1abe84276e3617f00bb2eaf . - . - . -_:B8670cfa3f1abe84276e3617f00bb2eaf "Marc Ciriello" . -_:B8670cfa3f1abe84276e3617f00bb2eaf "Marc_Ciriello@hms.harvard.edu" . - "http://purl.obolibrary.org/obo/ero.owl" . - "inactive" . - "eVOC (Expressed Sequence Annotation for Humans)" . - "anatomy and development" . - _:B6398ddb204ec50307f1f811a09110bda . -_:B6398ddb204ec50307f1f811a09110bda "eVOC mailing list" . -_:B6398ddb204ec50307f1f811a09110bda "evoc@sanbi.ac.za" . - "inactive" . - . - "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase." . - "Fly taxonomy" . - "organisms" . - _:Bd7548016ab7e8f738e378f5466eafa0f . - . - . -_:Bd7548016ab7e8f738e378f5466eafa0f "Clare Pilgrim" . -_:Bd7548016ab7e8f738e378f5466eafa0f "cp390@cam.ac.uk" . - "http://purl.obolibrary.org/obo/fbsp.owl" . - "inactive" . - "Influenza Ontology" . - "health" . - "http://purl.obolibrary.org/obo/flu/tracker" . - _:B97aa3a9af40fe41f16e27de07303773d . - . - . -_:B97aa3a9af40fe41f16e27de07303773d "Burke Squires" . -_:B97aa3a9af40fe41f16e27de07303773d "burkesquires@gmail.com" . - "http://purl.obolibrary.org/obo/flu.owl" . - "inactive" . - "Cereal Plant Gross Anatomy" . - "anatomy and development" . - _:B5d1bb0751b8d52b964d5bae0c621de52 . - . -_:B5d1bb0751b8d52b964d5bae0c621de52 "Plant Ontology Administrators" . -_:B5d1bb0751b8d52b964d5bae0c621de52 "po-discuss@plantontology.org" . - "inactive" . - "Habronattus courtship" . - "organisms" . - _:Bc78cd89e4b9fe5627bf079972dfb46fc . - . -_:Bc78cd89e4b9fe5627bf079972dfb46fc "Peter Midford" . -_:Bc78cd89e4b9fe5627bf079972dfb46fc "peteremidford@yahoo.com" . - "inactive" . - "Event (INOH pathway ontology)" . - "chemistry and biochemistry" . - . - "inactive" . - "Molecule role (INOH Protein name/family name ontology)" . - "chemistry and biochemistry" . - _:B53da502cb414089e9552a89ec99cf4cc . - . -_:B53da502cb414089e9552a89ec99cf4cc "INOH curators" . -_:B53da502cb414089e9552a89ec99cf4cc "curator@inoh.org" . - "inactive" . - "Protein Domains" . - "chemistry and biochemistry" . - _:B8df6aea47b19c5109eb979da97274edc . - . -_:B8df6aea47b19c5109eb979da97274edc "InterPro Help" . -_:B8df6aea47b19c5109eb979da97274edc "interhelp@ebi.ac.uk" . - "inactive" . - "An ontology representation of the LIPIDMAPS nomenclature classification." . - "Lipid Ontology" . - "chemistry and biochemistry" . - _:Be7bf2a52fb534178bb8177daea2d20ad . -_:Be7bf2a52fb534178bb8177daea2d20ad "Christopher Baker" . -_:Be7bf2a52fb534178bb8177daea2d20ad "bakerc@unb.ca" . - "inactive" . - "Loggerhead nesting" . - "organisms" . - _:Bca20dcc92d11e30e186eb06103716295 . - . -_:Bca20dcc92d11e30e186eb06103716295 "Peter Midford" . -_:Bca20dcc92d11e30e186eb06103716295 "peteremidford@yahoo.com" . - "inactive" . - "Multiple alignment" . - "chemistry and biochemistry" . - _:B1ec076d3403b7ddb55c933daf468aa40 . - . -_:B1ec076d3403b7ddb55c933daf468aa40 "Julie Thompson" . -_:B1ec076d3403b7ddb55c933daf468aa40 "julie@igbmc.u-strasbg.fr" . - "inactive" . - "Minimal anatomical terminology" . - "anatomy and development" . - _:B1872f336941a4af859d8f1bd3eec945f . -_:B1872f336941a4af859d8f1bd3eec945f "Jonathan Bard" . -_:B1872f336941a4af859d8f1bd3eec945f "j.bard@ed.ac.uk" . - "inactive" . - . - "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes." . - "Medaka fish anatomy and development" . - "anatomy and development" . - _:B5280b21fd5ddf0297b3e32594eaa75fa . - . - "Oryzias" . -_:B5280b21fd5ddf0297b3e32594eaa75fa "Thorsten Henrich" . -_:B5280b21fd5ddf0297b3e32594eaa75fa "henrich@embl.de" . - "http://purl.obolibrary.org/obo/mfo.owl" . - "inactive" . - "An application ontology for use with miRNA databases." . - "microRNA Ontology" . - . - "chemistry and biochemistry" . - _:Bc26cba21cf5550f24364b388e372b4a0 . - . - . -_:Bc26cba21cf5550f24364b388e372b4a0 "Pantelis Topalis" . -_:Bc26cba21cf5550f24364b388e372b4a0 "topalis@imbb.forth.gr" . - "http://purl.obolibrary.org/obo/mirnao.owl" . - "inactive" . - "A standardized description of a microarray experiment in support of MAGE v.1." . - "Microarray experimental conditions" . - "investigations" . - _:B85dc00ec14cddb05654cf4fbad078e46 . - . - . - . -_:B85dc00ec14cddb05654cf4fbad078e46 "Chris Stoeckert" . -_:B85dc00ec14cddb05654cf4fbad078e46 "stoeckrt@pcbi.upenn.edu" . - "http://purl.obolibrary.org/obo/mo.owl" . - "inactive" . - "Neuronal cell types" . - "NIF Cell" . - "anatomy and development" . - _:B303fa09134c595b183d193bcd1e17d4f . - . -_:B303fa09134c595b183d193bcd1e17d4f "Fahim Imam" . -_:B303fa09134c595b183d193bcd1e17d4f "smtifahim@gmail.com" . - "inactive" . - "NIF Dysfunction" . - "health" . - _:B96fb9d123cdbd2707a73eaed4daeb606 . - . -_:B96fb9d123cdbd2707a73eaed4daeb606 "Fahim Imam" . -_:B96fb9d123cdbd2707a73eaed4daeb606 "smtifahim@gmail.com" . - "inactive" . - "NIF Gross Anatomy" . - "anatomy and development" . - _:Bd550e3df10aea3dff12a36bf31debae4 . - . -_:Bd550e3df10aea3dff12a36bf31debae4 "Fahim Imam" . -_:Bd550e3df10aea3dff12a36bf31debae4 "smtifahim@gmail.com" . - "inactive" . - "Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation." . - "NMR-instrument specific component of metabolomics investigations" . - "investigations" . - _:B8e1c3d8ee14b23eeac69097bd001251b . - . - . - . -_:B8e1c3d8ee14b23eeac69097bd001251b "Schober Daniel" . -_:B8e1c3d8ee14b23eeac69097bd001251b "schober@imbi.uni-freiburg.de" . - "http://purl.obolibrary.org/obo/nmr.owl" . - "inactive" . - "OBO relationship types (legacy)" . - "upper" . - _:B4c5335370a0037fa59c9e274e2b2c135 . - . -_:B4c5335370a0037fa59c9e274e2b2c135 "Chris Mungall" . -_:B4c5335370a0037fa59c9e274e2b2c135 "cjmungall@lbl.gov" . - "inactive" . - "An ontology that formalizes the genomic element by defining an upper class genetic interval" . - "Ontology for genetic interval" . - "chemistry and biochemistry" . - "https://code.google.com/p/ontology-for-genetic-interval/issues/list" . - _:Bef766c0172eb8c8deb0a678c7c958724 . - . - . -_:Bef766c0172eb8c8deb0a678c7c958724 "Asiyah Yu Lin" . -_:Bef766c0172eb8c8deb0a678c7c958724 "linikujp@gmail.com" . - "http://purl.obolibrary.org/obo/ogi.owl" . -_:B6f41a68401dea9a4a06dca1c40912507 "Mathias Brochhausen" . -_:B6f41a68401dea9a4a06dca1c40912507 "mbrochhausen@gmail.com" . - "http://purl.obolibrary.org/obo/omiabis.owl" . - "inactive" . - . - "Plant Anatomy Ontology" . - "anatomy and development" . - _:B8a220232fd5bdf8e509de042403ebd2e . - . -_:B8a220232fd5bdf8e509de042403ebd2e "Pankaj Jaiswal" . -_:B8a220232fd5bdf8e509de042403ebd2e "jaiswalp@science.oregonstate.edu" . - "inactive" . - . - "Platynereis stage ontology" . - "anatomy and development" . - _:B88e73d3802b72e95df2d8ab40bf874d3 . - . - "Platynereis" . -_:B88e73d3802b72e95df2d8ab40bf874d3 "Thorsten Henrich" . -_:B88e73d3802b72e95df2d8ab40bf874d3 "henrich@embl.de" . - "inactive" . - . - "Plant Growth and Development Stage" . - "anatomy and development" . - _:Bed705b7f2325e9b3f6cfba73fc374764 . - . -_:Bed705b7f2325e9b3f6cfba73fc374764 "Plant Ontology Administrators" . -_:Bed705b7f2325e9b3f6cfba73fc374764 "po-discuss@plantontology.org" . - "inactive" . - "Plasmodium life cycle" . - "anatomy and development" . - _:B13dd18a77e2c5f7e804cdcc3829b5b53 . - . -_:B13dd18a77e2c5f7e804cdcc3829b5b53 "Matt Berriman" . -_:B13dd18a77e2c5f7e804cdcc3829b5b53 "mb4@sanger.ac.uk" . - "inactive" . - "Proteomics data and process provenance" . - "chemistry and biochemistry" . - _:Bcc8243bc1aa835f13d26b7dd34c3e9d3 . - . -_:Bcc8243bc1aa835f13d26b7dd34c3e9d3 "Satya S. Sahoo" . -_:Bcc8243bc1aa835f13d26b7dd34c3e9d3 "satya30@uga.edu" . - "inactive" . - "For the description of covalent bonds in proteins." . - "Protein covalent bond" . - "chemistry and biochemistry" . - _:Be01cc0aab48c71b19b91ffbaa6d9f339 . - . -_:Be01cc0aab48c71b19b91ffbaa6d9f339 "John Garavelli" . -_:Be01cc0aab48c71b19b91ffbaa6d9f339 "john.garavelli@ebi.ac.uk" . - "inactive" . - . - "Subcellular anatomy ontology" . - "anatomy and development" . - _:B8bc51cb57b68bc39e88064910779666c . - . -_:B8bc51cb57b68bc39e88064910779666c "Stephen Larson" . -_:B8bc51cb57b68bc39e88064910779666c "slarson@ncmir.ucsd.edu" . - "inactive" . - "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments." . - "Sample processing and separation techniques" . - "investigations" . - _:Bfbbe2d4d6e7c1745d50a39fe7b9199e8 . - . - . - . -_:Bfbbe2d4d6e7c1745d50a39fe7b9199e8 "SEP developers via the PSI and MSI mailing lists" . -_:Bfbbe2d4d6e7c1745d50a39fe7b9199e8 "psidev-gps-dev@lists.sourceforge.net" . - "http://purl.obolibrary.org/obo/sep.owl" . - "inactive" . - . - "Suggested Ontology for Pharmacogenomics" . - "chemistry and biochemistry" . - _:Bfb92d32bf418c3efce2ed4b7dc7910eb . - . -_:Bfb92d32bf418c3efce2ed4b7dc7910eb "Adrien Coulet" . -_:Bfb92d32bf418c3efce2ed4b7dc7910eb "Adrien.Coulet@loria.fr" . - "inactive" . - . - "Terminology of Anatomy of Human Embryology" . - "anatomy and development" . - _:B50b27597aa5f9bee888904978d828cca . -_:B50b27597aa5f9bee888904978d828cca "Pierre Sprumont" . -_:B50b27597aa5f9bee888904978d828cca "pierre.sprumont@unifr.ch" . - "inactive" . - . - "Terminology of Anatomy of Human Histology" . - "health" . - _:B0565230dbe6a41bee6c6ea2ad99b9ce1 . -_:B0565230dbe6a41bee6c6ea2ad99b9ce1 "Pierre Sprumont" . -_:B0565230dbe6a41bee6c6ea2ad99b9ce1 "pierre.sprumont@unifr.ch" . - "inactive" . - . - "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa" . - "Teleost Anatomy Ontology" . - . - . - "anatomy and development" . - _:Bd5d353efb61d4a671f38387896e25435 . - . - . - "The teleost anatomy ontology: anatomical representation for the genomics age" . -_:Bd5d353efb61d4a671f38387896e25435 "Wasila Dahdul" . -_:Bd5d353efb61d4a671f38387896e25435 "wasila.dahdul@usd.edu" . - "http://purl.obolibrary.org/obo/tao.owl" . - "inactive" . - "Vertebrate Homologous Ontology Group Ontology" . - "anatomy and development" . - . - "http://purl.obolibrary.org/obo/vhog.owl" . - "inactive" . - . - "Vertebrate skeletal anatomy ontology." . - "Vertebrate Skeletal Anatomy Ontology-" . - "anatomy and development" . - _:Ba2183f2767682e83b1509ed558a9a222 . - . - . - . - "Vertebrata" . -_:Ba2183f2767682e83b1509ed558a9a222 "Wasila Dahdul" . -_:Ba2183f2767682e83b1509ed558a9a222 "wasila.dahdul@usd.edu" . - "http://purl.obolibrary.org/obo/vsao.owl" . - "inactive" . - . - "Yeast phenotypes" . - "phenotype" . - _:B624245855d71b16d61b04b36802fcfaa . - . - "Saccharomyces cerevisiae" . -_:B624245855d71b16d61b04b36802fcfaa "Mike Cherry" . -_:B624245855d71b16d61b04b36802fcfaa "cherry@genome.stanford.edu" . - "inactive" . - . - "Maize gross anatomy" . - "anatomy and development" . - _:B9423ec8a7deb4c36bb7c487f90eafe82 . - . - "Zea" . -_:B9423ec8a7deb4c36bb7c487f90eafe82 "Leszek Vincent" . -_:B9423ec8a7deb4c36bb7c487f90eafe82 "Leszek@missouri.edu" . + "Experiment design driven FAIRification of omics data matrices, an exemplar" . + "dictyBase and the Dicty Stock Center (version 2.0) - a progress report" . + "Semantic concept schema of the linear mixed model of experimental observations" . + "FOBI: an ontology to represent food intake data and associate it with metabolomic data" . + "Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology" . + "Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management" . + "The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications." . + "The Gene Ontology resource: enriching a GOld mine" . + "The Infectious Disease Ontology in the age of COVID-19" . + "Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms" . + "The fobitools framework: the first steps towards food enrichment analysis" . + "The Human Disease Ontology 2022 update" . + "PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions" . + "The Prescription of Drug Ontology 2.0 (PDRO): More Than the Sum of Its Parts" . + "ECO: the Evidence and Conclusion Ontology, an update for 2022." . + "ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements" . + "The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development." . + "The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation." . + "A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology" . + "Core reference ontology for individualized exercise prescription" . + "Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery" . + "An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature" . + "NSF DEB-0956049" . + "NSF ABI-1356381" . + "NSF ABI-1458400" . + "OntoBee" . + "OntoBee" . + "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species" . + "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition" . diff --git a/registry/ontologies.ttl b/registry/ontologies.ttl index 3c77e08b2..6e5bef7b9 100644 --- a/registry/ontologies.ttl +++ b/registry/ontologies.ttl @@ -1,7332 +1,7302 @@ - - "ADO" ; - "active" ; - ; - "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelated entities that demonstrate the network of the understanding on Alzheimer's disease and can be readily applied for text mining." ; - "Alzheimer's Disease Ontology" ; - ; - "health" ; - "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/issues" ; - "http://purl.obolibrary.org/obo/ado.owl" ; - _:b0 ; - ; - . + "All life" . - - "BFO" ; - "active" ; - "The upper level ontology upon which OBO Foundry ontologies are built." ; - "Basic Formal Ontology" ; - ; - "upper" ; - "https://github.com/BFO-ontology/BFO/issues" ; - "https://groups.google.com/forum/#!forum/bfo-discuss" ; - ; - "http://purl.obolibrary.org/obo/bfo.owl" ; - _:b1 ; - ; - ; - . + "Mus" . - - ; - "CC BY 4.0" . + "Rattus" . -_:b0 "Alpha Tom Kodamullil" ; - "alpha.tom.kodamullil@scai.fraunhofer.de" . + "Ctenophore" . - - "http://purl.obolibrary.org/obo/ado.owl" . + "Teleostei" . - - "AfPO" ; - "active" ; - "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms." ; - "African Population Ontology" ; - ; - "organisms" ; - "https://github.com/h3abionet/afpo/issues" ; - "http://purl.obolibrary.org/obo/afpo.owl" ; - _:b2 ; - ; - ; - ; - . + "Viridiplantae" . -_:b2 "Melek Chaouch" ; - "mcmelek@msn.com" . + "Metazoa" . - - "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies" ; - "AfPO (OWL edition)" ; - "http://purl.obolibrary.org/obo/afpo.owl" . + "Bilateria" . - - "A direct translation of the AfPO (OWL edition) into OBO format" ; - "AfPO (OBO edition)" ; - "http://purl.obolibrary.org/obo/afpo.obo" ; - . + "Mammalia"; + "Mammalian" . - - "A direct translation of the AfPO (OWL edition) into OBOGraph JSON format" ; - "AfPO (obographs JSON edition)" ; - "http://purl.obolibrary.org/obo/afpo.json" ; - . + "Anopheles" . - - "AGRO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments" ; - "Agronomy Ontology" ; - ; - ; - "agriculture" ; - "https://github.com/AgriculturalSemantics/agro/issues/" ; - "http://purl.obolibrary.org/obo/agro.owl" ; - _:b3 ; - ; - . + "Dictyostelium discoideum" . - - "ENVO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - "An ontology of environmental systems, components, and processes." ; - "Environment Ontology" ; - ; - ; - ; - "environment" ; - "https://github.com/EnvironmentOntology/envo/issues/" ; - "http://purl.obolibrary.org/obo/envo.owl" ; - _:b4 ; - ; - ; - ; - ; - ; - ; - ; - . + "Zea" . - - "FOODON" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research" ; - "Food Ontology" ; - ; - ; - "diet, metabolomics, and nutrition" ; - "https://github.com/FoodOntology/foodon/issues/" ; - "http://purl.obolibrary.org/obo/foodon.owl" ; - _:b5 ; - ; - ; - . + "Fungal" . - - "GO" ; - "active" ; - ; - ; - ; - ; - ; - ; - "An ontology for describing the function of genes and gene products" ; - "Gene Ontology" ; - ; - ; - ; - "biological systems" ; - "https://github.com/geneontology/go-ontology/issues/" ; - ; - "http://purl.obolibrary.org/obo/go.owl" ; - _:b6 ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - . + "Ascomycota" . - - "IAO" ; - "active" ; - "An ontology of information entities." ; - "Information Artifact Ontology" ; - ; - "information" ; - "https://github.com/information-artifact-ontology/IAO/issues" ; - "http://purl.obolibrary.org/obo/iao.owl" ; - _:b7 ; - ; - ; - ; - ; - . + "S. pombe" . - - "NCBITaxon" ; - "active" ; - "An ontology representation of the NCBI organismal taxonomy" ; - "NCBI organismal classification" ; - ; - "organisms" ; - "https://github.com/obophenotype/ncbitaxon/issues" ; - ; - "http://purl.obolibrary.org/obo/ncbitaxon.owl" ; - _:b8 ; - ; - ; - ; - ; - ; - ; - . + "Saccharomyces cerevisiae" . - - "OBI" ; - "active" ; - "An integrated ontology for the description of life-science and clinical investigations" ; - "Ontology for Biomedical Investigations" ; - ; - ; - "investigations" ; - "http://purl.obolibrary.org/obo/obi/tracker" ; - "http://groups.google.com/group/obi-users" ; - ; - "http://purl.obolibrary.org/obo/obi.owl" ; - _:b9 ; - ; - ; - ; - ; - . + "Porifera" . - - "PATO" ; - "active" ; - "An ontology of phenotypic qualities (properties, attributes or characteristics)" ; - "Phenotype And Trait Ontology" ; - ; - ; - ; - "phenotype" ; - "https://github.com/pato-ontology/pato/issues" ; - ; - "http://purl.obolibrary.org/obo/pato.owl" ; - _:b10 ; - ; - ; - ; - ; - . + "Caenorhabditis" . - - "PECO" ; - "active" ; - "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." ; - "Plant Experimental Conditions Ontology" ; - ; - ; - "investigations" ; - "https://github.com/Planteome/plant-experimental-conditions-ontology/issues" ; - "http://purl.obolibrary.org/obo/peco.owl" ; - _:b11 ; - ; - ; - ; - . + "Platynereis" . - - "PO" ; - "active" ; - ; - "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data." ; - "Plant Ontology" ; - ; - ; - ; - "anatomy and development" ; - "https://github.com/Planteome/plant-ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/po.owl" ; - _:b12 ; - ; - ; - ; - ; - . + "Cephalopod" . - - "RO" ; - "active" ; - "Relationship types shared across multiple ontologies" ; - "Relation Ontology" ; - ; - "upper" ; - "https://github.com/oborel/obo-relations/issues" ; - "https://groups.google.com/forum/#!forum/obo-relations" ; - "http://purl.obolibrary.org/obo/ro.owl" ; - _:b13 ; - ; - ; - ; - ; - ; - ; - ; - ; - . + "spiders" . - - "TO" ; - "active" ; - ; - "A controlled vocabulary to describe phenotypic traits in plants." ; - "Plant Trait Ontology" ; - ; - ; - "phenotype" ; - "https://github.com/Planteome/plant-trait-ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/to.owl" ; - _:b14 ; - ; - ; - ; - . + "Ixodidae" . - - "UO" ; - "active" ; - "Metrical units for use in conjunction with PATO" ; - "Units of measurement ontology" ; - ; - ; - "phenotype" ; - "https://github.com/bio-ontology-research-group/unit-ontology/issues" ; - "http://purl.obolibrary.org/obo/uo.owl" ; - _:b15 ; - ; - ; - ; - . + "Drosophila" . - - "XCO" ; - "active" ; - "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms." ; - "Experimental condition ontology" ; - ; - ; - ; - "health" ; - "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/xco.owl" ; - _:b16 ; - ; - ; - ; - . + "Hymenoptera" . - - "Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics." . + "Vertebrata" . -_:b3 "Marie-Angélique Laporte" ; - "m.a.laporte@cgiar.org" . + "Danio" . - - "Contains all AgrO terms and links to other relevant ontologies." ; - "AgrO" ; - "http://purl.obolibrary.org/obo/agro.owl" . + "Oryzias" . - - "AISM" ; - "active" ; - ; - ; - ; - ; - ; - ; - "The AISM contains terms used in insect biodiversity research for describing structures of the exoskeleton and the skeletomuscular system. It aims to serve as the basic backbone of generalized terms to be expanded with order-specific terminology." ; - "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)" ; - ; - "anatomy and development" ; - "https://github.com/insect-morphology/aism/issues" ; - "http://purl.obolibrary.org/obo/aism.owl" ; - _:b17 ; - ; - ; - ; - . + "Amphibia" . - - "BSPO" ; - "active" ; - "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces" ; - "Biological Spatial Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/biological-spatial-ontology/issues" ; - "http://purl.obolibrary.org/obo/bspo.owl" ; - _:b18 ; - ; - ; - . + "Xenopus" . - - "CARO" ; - "inactive" ; - "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species" ; - "Common Anatomy Reference Ontology" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/caro/issues" ; - _:b19 ; - ; - . + "Homo sapiens" . - - "UBERON" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies" ; - "Uberon multi-species anatomy ontology" ; - ; - ; - ; - "anatomy and development" ; - ; - ; - ; - ; - "https://github.com/obophenotype/uberon/issues" ; - "https://lists.sourceforge.net/lists/listinfo/obo-anatomy" ; - ; - ; - ; - ; - ; - "http://purl.obolibrary.org/obo/uberon.owl" ; - _:b20 ; - ; - ; - ; - ; - ; - ; - ; - ; - . +_:b0 "Alpha Tom Kodamullil"; + "alpha.tom.kodamullil@scai.fraunhofer.de" . -_:b17 "Jennifer C. Girón" ; - "entiminae@gmail.com" . +_:b1 "Melek Chaouch"; + "mcmelek@msn.com" . - - "http://purl.obolibrary.org/obo/aism.owl" . +_:b2 "Alpha Tom Kodamullil"; + "alpha.tom.kodamullil@scai.fraunhofer.de" . - - "http://purl.obolibrary.org/obo/aism.obo" . +_:b3 "Joshua Klein"; + "joshua.adam.klein@gmail.com" . - - "http://purl.obolibrary.org/obo/aism.json" . +_:b4 "George Gkoutos"; + "g.gkoutos@bham.ac.uk" . - - "AMPHX" ; - "active" ; - ; - "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)." ; - "The Amphioxus Development and Anatomy Ontology" ; - ; - "anatomy and development" ; - "https://github.com/EBISPOT/amphx_ontology/issues" ; - "http://purl.obolibrary.org/obo/amphx.owl" ; - _:b21 ; - ; - ; - . +_:b5 "Frederic Bastian"; + "frederic.bastian@unil.ch" . - - ; - "CC BY 3.0" . +_:b6 "None"; + "noreply@example.com" . -_:b21 "Hector Escriva" ; - "hescriva@obs-banyuls.fr" . +_:b7 "Jingshan Huang"; + "huang@southalabama.edu" . - - "http://purl.obolibrary.org/obo/amphx.owl" . +_:b8 "Dalia Alghamdi"; + "dal.alghamdi92@gmail.com" . - - "http://purl.obolibrary.org/obo/amphx.obo" . +_:b9 "Matt Yoder"; + "diapriid@gmail.com" . - - "APO" ; - "active" ; - ; - "A structured controlled vocabulary for the phenotypes of Ascomycete fungi" ; - "Ascomycete phenotype ontology" ; - ; - ; - "phenotype" ; - "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues" ; - "http://purl.obolibrary.org/obo/apo.owl" ; - _:b22 ; - ; - ; - . +_:b10 "Yongqunh He"; + "yongqunh@med.umich.edu" . - - "Ascomycota" . +_:b11 "Matt Yoder"; + "mjyoder@illinois.edu" . - - "New mutant phenotype data curation system in the Saccharomyces Genome Database" . +_:b12 "Chris Mungall"; + "cjmungall@lbl.gov" . -_:b22 "Stacia R Engel" ; - "stacia@stanford.edu" . +_:b13 "Chris Mungall"; + "cjmungall@lbl.gov" . - - "http://purl.obolibrary.org/obo/apo.owl" . +_:b14 "Jie Zheng"; + "jiezhen@med.umich.edu" . - - "http://purl.obolibrary.org/obo/apo.obo" . +_:b15 "Bjoern Peters"; + "bpeters@lji.org" . - - "APOLLO_SV" ; - "active" ; - "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation." ; - "Apollo Structured Vocabulary" ; - ; - ; - "health" ; - "https://github.com/ApolloDev/apollo-sv/issues" ; - "http://purl.obolibrary.org/obo/apollo_sv.owl" ; - _:b23 ; - ; - . +_:b16 "Justin Whorton"; + "jmwhorton@uams.edu" . - - "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation" . +_:b17 "Jie Zheng"; + "zhengj2007@gmail.com" . -_:b23 "William Hogan" ; - "hoganwr@gmail.com" . +_:b18 "Yongqun Oliver He"; + "yongqunh@med.umich.edu" . - - "http://purl.obolibrary.org/obo/apollo_sv.owl" . +_:b19 "Brian Aevermann"; + "baeverma@jcvi.org" . - - "ARO" ; - "active" ; - "Antibiotic resistance genes and mutations" ; - "Antibiotic Resistance Ontology" ; - ; - ; - "microbiology" ; - "https://github.com/arpcard/aro/issues" ; - "https://mailman.mcmaster.ca/mailman/listinfo/card-l" ; - "http://purl.obolibrary.org/obo/aro.owl" ; - _:b24 ; - ; - . +_:b20 "Bill Duncan"; + "wdduncan@gmail.com" . - - "CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database." . +_:b21 "Yongqun Oliver He"; + "yongqunh@med.umich.edu" . -_:b24 "Andrew G. McArthur" ; - "mcarthua@mcmaster.ca" . +_:b22 "Edison Ong"; + "edong@umich.edu" . - - "http://purl.obolibrary.org/obo/aro.owl" . +_:b23 "Jingshan Huang"; + "huang@southalabama.edu" . - - "BCO" ; - "active" ; - "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys." ; - "Biological Collections Ontology" ; - ; - ; - "organisms" ; - "https://github.com/BiodiversityOntologies/bco/issues" ; - "http://purl.obolibrary.org/obo/bco.owl" ; - _:b25 ; - ; - . +_:b24 "Christian-Alexander Dudek"; + "c.dudek@tu-braunschweig.de" . - - ; - "CC0 1.0" . +_:b25 "Chris Mungall"; + "cjmungall@lbl.gov" . - - "Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies" . +_:b26 "James C. Hu"; + "jimhu@tamu.edu" . -_:b25 "Ramona Walls" ; - "rlwalls2008@gmail.com" . +_:b27 "Bill Hogan"; + "hoganwr@gmail.com" . - - "http://purl.obolibrary.org/obo/bco.owl" . +_:b28 "Chen Yang"; + "chenyangnutrition@gmail.com" . - - ; - "CC BY 4.0" . +_:b29 "Francesco Vitali"; + "francesco.vitali@ibba.cnr.it" . - - "BioPortal Browser" ; - "BioPortal" . +_:b30 "Miguel A. Fortuna"; + "fortuna@ebd.csic.es" . -_:b1 "Barry Smith" ; - "phismith@buffalo.edu" . +_:b31 "Fernanda Farinelli"; + "fernanda.farinelli@gmail.com" . - - "http://purl.obolibrary.org/obo/bfo.owl" . +_:b32 "Mathias Brochhausen"; + "mbrochhausen@gmail.com" . - - "http://purl.obolibrary.org/obo/bfo.obo" . +_:b33 "Jie Zheng"; + "zhengj2007@gmail.com" . - - "BMONT" ; - "active" ; - "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects." ; - "Biomarker Ontology" ; - ; - "health" ; - "https://github.com/SCAI-BIO/BiomarkerOntology/issues" ; - ; - "http://purl.obolibrary.org/obo/bmont.owl" ; - _:b26 ; - ; - . +_:b34 "Yongqun Oliver He"; + "yongqunh@med.umich.edu" . - - "BioPortal Ontology Browser" ; - "BioPortal" . +_:b35 "Jim Balhoff"; + "balhoff@renci.org" . -_:b26 "Alpha Tom Kodamullil" ; - "alpha.tom.kodamullil@scai.fraunhofer.de" . +_:b36 "Stephen Fisher"; + "safisher@upenn.edu" . - - "Includes axioms linking to other ontologies, but no imports of those ontologies" ; - "http://purl.obolibrary.org/obo/BMONT.owl" . +_:b37 "Yongqunh He"; + "yongqunh@med.umich.edu" . - - "Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology." . +_:b38 "George Gkoutos"; + "g.gkoutos@gmail.com" . -_:b18 "Chris Mungall" ; - "cjmungall@lbl.gov" . +_:b39 "Saurav Kumar"; + "saurav.kumar@iispv.cat" . - - "http://purl.obolibrary.org/obo/bspo.owl" . +_:b40 "David Osumi-Sutherland"; + "davidos@ebi.ac.uk" . - - "http://purl.obolibrary.org/obo/bspo.obo" . +_:b41 "Ramona Walls"; + "rlwalls2008@gmail.com" . - - "BTO" ; - "active" ; - "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures." ; - "BRENDA tissue / enzyme source" ; - ; - ; - "anatomy and development" ; - "https://github.com/BRENDA-Enzymes/BTO/issues" ; - "http://purl.obolibrary.org/obo/bto.owl" ; - _:b27 ; - ; - ; - ; - ; - . +_:b42 "Paul Fabry"; + "paul.fabry@usherbrooke.ca" . - - "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources" . +_:b43 "Pankaj Jaiswal"; + "jaiswalp@science.oregonstate.edu" . -_:b27 "Christian-Alexander Dudek" ; - "c.dudek@tu-braunschweig.de" . +_:b44 "Alayne Cuzick"; + "alayne.cuzick@rothamsted.ac.uk" . - - "http://purl.obolibrary.org/obo/bto.owl" . +_:b45 "Sofia Robb"; + "smr@stowers.org" . - - "http://purl.obolibrary.org/obo/bto.obo" . +_:b46 "Liliana Andres Hernandez"; + "landreshdz@gmail.com" . - - "http://purl.obolibrary.org/obo/bto.json" . +_:b47 "Sofia Robb"; + "smr@stowers.org" . - - "CDAO" ; - "active" ; - "a formalization of concepts and relations relevant to evolutionary comparative analysis" ; - "Comparative Data Analysis Ontology" ; - ; - ; - "organisms" ; - "https://github.com/evoinfo/cdao/issues" ; - "http://purl.obolibrary.org/obo/cdao.owl" ; - _:b28 ; - ; - . +_:b48 "Pankaj Jaiswal"; + "jaiswalp@science.oregonstate.edu" . - - "Initial Implementation of a Comparative Data Analysis Ontology" . +_:b49 "Bob Thacker"; + "robert.thacker@stonybrook.edu" . -_:b28 "Jim Balhoff" ; - "balhoff@renci.org" . +_:b50 "Ramona Walls"; + "rlwalls2008@gmail.com" . - - "http://purl.obolibrary.org/obo/cdao.owl" . +_:b51 "Darren Natale"; + "dan5@georgetown.edu" . - - "CDNO" ; - "active" ; - ; - ; - ; - ; - ; - "CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet." ; - "Compositional Dietary Nutrition Ontology" ; - ; - ; - "diet, metabolomics, and nutrition" ; - "https://github.com/CompositionalDietaryNutritionOntology/cdno/issues" ; - "http://purl.obolibrary.org/obo/cdno.owl" ; - _:b29 ; - ; - ; - . +_:b52 "Wes Schafer"; + "wes_schafer@merck.com" . - - "CHEBI" ; - "active" ; - "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds." ; - "Chemical Entities of Biological Interest" ; - ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/ebi-chebi/ChEBI/issues" ; - ; - "http://purl.obolibrary.org/obo/chebi.owl" ; - _:b30 ; - ; - ; - ; - ; - ; - ; - ; - ; - . +_:b53 "Zach Landis-Lewis"; + "zachll@umich.edu" . - - ; - "CC BY 3.0" . +_:b54 "Laurel Cooper"; + "cooperl@oregonstate.edu" . - - "Establishing a Common Nutritional Vocabulary - From Food Production to Diet" . +_:b55 "G. Thomas Hayman"; + "gthayman@mcw.edu" . -_:b29 "Liliana Andres Hernandez" ; - "landreshdz@gmail.com" . +_:b56 "Daniel C. Berrios"; + "daniel.c.berrios@nasa.gov" . - - "http://purl.obolibrary.org/obo/cdno.owl" . +_:b57 "Adnan Malik"; + "amalik@ebi.ac.uk" . - - "http://purl.obolibrary.org/obo/cdno.obo" . +_:b58 "Chris Mungall"; + "cjmungall@lbl.gov" . - - "ChEBI: re-engineered for a sustainable future" . +_:b59 "Shur-Jen Wang"; + "sjwang@mcw.edu" . - - "ChEBI in 2016: Improved services and an expanding collection of metabolites." . +_:b60 "Colin Batchelor"; + "batchelorc@rsc.org" . - - "EBI CHEBI Browser" ; - "CHEBI" . +_:b61 "Matthew Brush"; + "mhb120@gmail.com" . -_:b30 "Adnan Malik" ; - "amalik@ebi.ac.uk" . +_:b62 "Dan Berrios"; + "daniel.c.berrios@nasa.gov" . - - "http://purl.obolibrary.org/obo/chebi.owl" . +_:b63 "Karen Eilbeck"; + "keilbeck@genetics.utah.edu" . - - "http://purl.obolibrary.org/obo/chebi.obo" . +_:b64 "Martin Ramirez"; + "ramirez@macn.gov.ar" . - - "http://purl.obolibrary.org/obo/chebi.json" . +_:b65 "Philippe Rocca-Serra"; + "proccaserra@gmail.com" . - - "chebi, compressed owl" ; - "http://purl.obolibrary.org/obo/chebi.owl.gz" . +_:b66 "Allyson Lister"; + "allyson.lister@oerc.ox.ac.uk" . - - "chebi_lite, no syns or xrefs" ; - "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo" . +_:b67 "Lynn Schriml"; + "lynn.schriml@gmail.com" . - - "chebi_core, no xrefs" ; - "http://purl.obolibrary.org/obo/chebi/chebi_core.obo" . +_:b68 "Egon Willighagen"; + "egon.willighagen@gmail.com" . - - "CHEMINF" ; - "active" ; - "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them." ; - "Chemical Information Ontology" ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/semanticchemistry/semanticchemistry/issues" ; - "https://groups.google.com/forum/#!forum/cheminf-ontology" ; - "http://purl.obolibrary.org/obo/cheminf.owl" ; - _:b31 ; - ; - . +_:b69 "Allyson Lister"; + "allyson.lister@oerc.ox.ac.uk" . - - ; - "CC0 1.0" . +_:b70 "Jim Balhoff"; + "balhoff@renci.org" . - - "The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web" . +_:b71 "Pankaj Jaiswal"; + "jaiswalp@science.oregonstate.edu" . -_:b31 "Egon Willighagen" ; - "egon.willighagen@gmail.com" . +_:b72 "Lynn Schriml"; + "lynn.schriml@gmail.com" . - - "http://purl.obolibrary.org/obo/cheminf.owl" . +_:b73 "Jim Balhoff"; + "balhoff@renci.org" . - - "CHIRO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes." ; - "CHEBI Integrated Role Ontology" ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/obophenotype/chiro/issues" ; - "http://purl.obolibrary.org/obo/chiro.owl" ; - _:b32 ; - ; - ; - . +_:b74 "Yuki Yamagata"; + "yuki.yamagata@riken.jp" . - - "HP" ; - "active" ; - ; - "The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease." ; - "Human Phenotype Ontology (HPO)" ; - ; - ; - ; - ; - ; - "phenotype" ; - "https://github.com/obophenotype/human-phenotype-ontology/issues/" ; - "https://groups.io/g/human-phenotype-ontology" ; - ; - ; - "http://purl.obolibrary.org/obo/hp.owl" ; - _:b33 ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - . +_:b75 "Chris Mungall"; + "cjmungall@lbl.gov" . - - "MP" ; - "active" ; - ; - "Standard terms for annotating mammalian phenotypic data." ; - "Mammalian Phenotype Ontology" ; - ; - ; - ; - ; - "phenotype" ; - "https://github.com/mgijax/mammalian-phenotype-ontology/issues" ; - "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" ; - ; - ; - ; - "http://purl.obolibrary.org/obo/mp.owl" ; - _:b34 ; - ; - ; - ; - ; - ; - . +_:b76 "George Gkoutos"; + "g.gkoutos@gmail.com" . - - "PR" ; - "active" ; - "An ontological representation of protein-related entities" ; - "PRotein Ontology (PRO)" ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/PROconsortium/PRoteinOntology/issues" ; - ; - ; - "http://purl.obolibrary.org/obo/pr.owl" ; - _:b35 ; - ; - ; - ; - ; - . +_:b77 "James McLaughlin"; + "jmcl@ebi.ac.uk" . - - "Extension of Roles in the ChEBI Ontology" . +_:b78 "Sabrina Toro"; + "Sabrina@tislab.org" . -_:b32 "Nicole Vasilevsky" ; +_:b79 "Nicole Vasilevsky"; "vasilevs@ohsu.edu" . - - "http://purl.obolibrary.org/obo/chiro.owl" . +_:b80 "Yongqunh He"; + "yongqunh@med.umich.edu" . - - "http://purl.obolibrary.org/obo/chiro.obo" . +_:b81 "Carissa Park"; + "caripark@iastate.edu" . - - "CHMO" ; - "active" ; - "CHMO, the chemical methods ontology, describes methods used to" ; - "Chemical Methods Ontology" ; - ; - "health" ; - "https://github.com/rsc-ontologies/rsc-cmo/issues" ; - "chemistry-ontologies@googlegroups.com" ; - "http://purl.obolibrary.org/obo/chmo.owl" ; - _:b36 ; - ; - . +_:b82 "Jim Balhoff"; + "balhoff@renci.org" . -_:b36 "Colin Batchelor" ; - "batchelorc@rsc.org" . +_:b83 "Raymond Lee"; + "raymond@caltech.edu" . - - "http://purl.obolibrary.org/obo/chmo.owl" . +_:b84 "Chris Grove"; + "cgrove@caltech.edu" . - - "CIDO" ; - "active" ; - "The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment." ; - "Coronavirus Infectious Disease Ontology" ; - ; - ; - "health" ; - "https://github.com/cido-ontology/cido/issues" ; - "cido-discuss@googlegroups.com" ; - "http://purl.obolibrary.org/obo/cido.owl" ; - _:b37 ; - ; - . +_:b85 "Chris Grove"; + "cgrove@caltech.edu" . - - "A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology" . +_:b86 "Erik Segerdell"; + "Erik.Segerdell@cchmc.org" . -_:b37 "Yongqun Oliver He" ; - "yongqunh@med.umich.edu" . +_:b87 "Jennifer Smith"; + "jrsmith@mcw.edu" . - - "http://purl.obolibrary.org/obo/cido.owl" . +_:b88 "Lutz Fischer"; + "lutz.fischer@tu-berlin.de" . - - "CIO" ; - "active" ; - "An ontology to capture confidence information about annotations." ; - "Confidence Information Ontology" ; - ; - ; - "information" ; - "https://github.com/BgeeDB/confidence-information-ontology" ; - "http://purl.obolibrary.org/obo/cio.owl" ; - _:b38 ; - ; - ; - . +_:b89 "Erik Segerdell"; + "Erik.Segerdell@cchmc.org" . - - "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations" . +_:b90 "Colin Batchelor"; + "batchelorc@rsc.org" . -_:b38 "Frédéric Bastian" ; - "frederic.bastian@unil.ch" . +_:b91 "Yvonne Bradford"; + "ybradford@zfin.org" . - - "http://purl.obolibrary.org/obo/cio.owl" . +_:b92 "Ceri Van Slyke"; + "van_slyke@zfin.org" . - - "http://purl.obolibrary.org/obo/cio.obo" . +_:b93 "Ceri Van Slyke"; + "van_slyke@zfin.org" . - - "CL" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - "The Cell Ontology is a structured controlled vocabulary for cell types in animals." ; - "Cell Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/cell-ontology/issues" ; - "https://groups.google.com/g/cl_edit" ; - "http://purl.obolibrary.org/obo/cl.owl" ; - _:b39 ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - . +_:b94 "Yvonne Bradford"; + "ybradford@zfin.org" . - - "OMO" ; - "active" ; - "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." ; - "OBO Metadata Ontology" ; - ; - "information" ; - "https://github.com/information-artifact-ontology/ontology-metadata/issues" ; - "http://purl.obolibrary.org/obo/omo.owl" ; - _:b40 ; - ; - . +_:b95 "Clair Kronk"; + "kronkcj@mail.uc.edu" . - - "Metazoa" . +_:b96 "Sebastian Koehler"; + "dr.sebastian.koehler@gmail.com" . - - "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability." . +_:b97 "Jonathan Karr"; + "jonrkarr@gmail.com" . -_:b39 "David Osumi-Sutherland" ; - "do12@sanger.ac.uk" . +_:b98 "Rahuman Sheriff"; + "sheriff@ebi.ac.uk" . - - "Complete ontology, plus inter-ontology axioms, and imports modules" ; - "Main CL OWL edition" ; - "owl-rdf/xml" ; - "http://purl.obolibrary.org/obo/cl.owl" . +_:b99 "Jade Hotchkiss"; + "giant.plankton@gmail.com" . - - "Complete ontology, plus inter-ontology axioms, and imports modules merged in" ; - "CL obo format edition" ; - "obo" ; - "http://purl.obolibrary.org/obo/cl.obo" . +_:b100 "chEBI" . - - "Complete ontology, plus inter-ontology axioms, and imports modules merged in" ; - "CL OBOGraph-JSON format edition" ; - "json" ; - "http://purl.obolibrary.org/obo/cl.json" . +_:b101 "Yongqun Oliver He"; + "yongqunh@med.umich.edu" . - - "Basic version, no inter-ontology axioms" ; - "Basic CL" ; - "owl-rdf/xml" ; - "http://purl.obolibrary.org/obo/cl/cl-basic.owl" . +_:b102 "Chris Mungall"; + "cjmungall@lbl.gov" . - - "Basic version, no inter-ontology axioms" ; - "Basic CL (OBO version)" ; - "obo" ; - "http://purl.obolibrary.org/obo/cl/cl-basic.obo" . +_:b103 "Mauno Vihinen"; + "mauno.vihinen@med.lu.se" . - - "Basic version, no inter-ontology axioms" ; - "Basic CL (OBOGraph-JSON version)" ; - "json" ; - "http://purl.obolibrary.org/obo/cl/cl-basic.json" . +_:b104 "Jie Zheng"; + "jiezhen@med.umich.edu" . - - "complete CL but with no imports or external axioms" ; - "CL base module" ; - "owl-rdf/xml" ; - "http://purl.obolibrary.org/obo/cl/cl-base.owl" . +_:b105 "Robert Druzinsky"; + "druzinsk@uic.edu" . - - "complete CL but with no imports or external axioms" ; - "CL base module (OBO version)" ; - "obo" ; - "http://purl.obolibrary.org/obo/cl/cl-base.obo" . +_:b106 "Carrine Blank"; + "carrine.blank@umontana.edu" . - - "complete CL but with no imports or external axioms" ; - "CL base module (OBOGraph-JSON version)" ; - "json" ; - "http://purl.obolibrary.org/obo/cl/cl-base.json" . +_:b107 "Asiyah Yu Lin"; + "linikujp@gmail.com" . - - "CLAO" ; - "active" ; - ; - "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)." ; - "Collembola Anatomy Ontology" ; - ; - "anatomy and development" ; - "https://github.com/luis-gonzalez-m/Collembola/issues" ; - "http://purl.obolibrary.org/obo/clao.owl" ; - _:b41 ; - ; - ; - . +_:b108 "Frédéric Bastian"; + "frederic.bastian@unil.ch" . -_:b41 "Luis González-Montaña" ; - "lagonzalezmo@unal.edu.co" . +_:b109 "Frédéric Bastian"; + "frederic.bastian@unil.ch" . - - "http://purl.obolibrary.org/obo/clao.owl" . +_:b110 "Jonathan Bard"; + "J.Bard@ed.ac.uk" . - - "http://purl.obolibrary.org/obo/clao.obo" . +_:b111 "Chris Mungall"; + "cjmungall@lbl.gov" . - - "CLO" ; - "active" ; - ; - ; - ; - ; - "An ontology to standardize and integrate cell line information and to support computer-assisted reasoning." ; - "Cell Line Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/CLO-Ontology/CLO/issues" ; - "http://purl.obolibrary.org/obo/clo.owl" ; - _:b42 ; - ; - . +_:b112 "Marie-Angélique Laporte"; + "m.a.laporte@cgiar.org" . - - "DOID" ; - "active" ; - ; - "An ontology for describing the classification of human diseases organized by etiology." ; - "Human Disease Ontology" ; - ; - ; - ; - "health" ; - "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues" ; - ; - "http://purl.obolibrary.org/obo/doid.owl" ; - _:b43 ; - ; - ; - ; - . +_:b113 "Frédéric Bastian"; + "frederic.bastian@unil.ch" . - - "CLO: The Cell Line Ontology" . +_:b114 "Jonathan Bard"; + "J.Bard@ed.ac.uk" . -_:b42 "Jie Zheng" ; - "zhengj2007@gmail.com" . +_:b115 "Onard Mejino"; + "mejino@u.washington.edu" . - - "http://purl.obolibrary.org/obo/clo.owl" . +_:b116 "Pantelis Topalis"; + "topalis@imbb.forth.gr" . - - "CLYH" ; - "active" ; - ; - ; - ; - "The Clytia hemisphaerica Development and Anatomy Ontology (CLYH) describes the anatomical and developmental features of the Clytia hemisphaerica life cycle." ; - "Clytia hemisphaerica Development and Anatomy Ontology" ; - ; - "anatomy and development" ; - "https://github.com/EBISPOT/clyh_ontology/issues" ; - "http://purl.obolibrary.org/obo/clyh.owl" ; - _:b44 ; - ; - ; - . +_:b117 "Christos (Kitsos) Louis"; + "louis@imbb.forth.gr" . -_:b44 "Lucas Leclere" ; - "lucas.leclere@obs-banyuls.fr" . +_:b118 "Colin Batchelor"; + "BatchelorC@rsc.org" . - - "http://purl.obolibrary.org/obo/clyh.owl" . +_:b119 "Daniel Sonenshine"; + "dsonensh@odu.edu" . - - "http://purl.obolibrary.org/obo/clyh.obo" . +_:b120 "Pantelis Topalis"; + "topalis@imbb.forth.gr" . - - "CMO" ; - "active" ; - "Morphological and physiological measurement records generated from clinical and model organism research and health programs." ; - "Clinical measurement ontology" ; - ; - ; - ; - "health" ; - "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/cmo.owl" ; - _:b45 ; - ; - ; - ; - . +_:b121 "Anne Morgat"; + "Anne.Morgat@sib.swiss" . - - "Three ontologies to define phenotype measurement data." . +_:b122 "David Blackburn"; + "david.c.blackburn@gmail.com" . - - "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." . +_:b123 "Animal Diversity Web technical staff"; + "adw_geeks@umich.edu" . - - "RGD Ontology Browser" ; - "RGD" . +_:b124 "David Osumi-Sutherland"; + "do12@sanger.ac.uk" . -_:b45 "Jennifer Smith" ; - "jrsmith@mcw.edu" . +_:b125 "Melanie Courtot"; + "mcourtot@gmail.com" . - - "http://purl.obolibrary.org/obo/cmo.owl" . +_:b126 "David Blackburn"; + "david.c.blackburn@gmail.com" . - - "http://purl.obolibrary.org/obo/cmo.obo" . +_:b127 "Jie Zheng"; + "jiezheng@pennmedicine.upenn.edu" . - - "COB" ; - "active" ; - "COB brings together key terms from a wide range of OBO projects to improve interoperability." ; - "Core Ontology for Biology and Biomedicine" ; - ; - "upper" ; - "https://github.com/OBOFoundry/COB/issues" ; - "http://purl.obolibrary.org/obo/cob.owl" ; - _:b46 ; - ; - ; - ; - ; - ; - . +_:b128 "Thorsten Henrich"; + "henrich@embl.de" . -_:b46 "Bjoern Peters" ; - "bpeters@lji.org" . +_:b129 "Vivian Lee"; + "vlee@ebi.ac.uk" . - - "Core Ontology for Biology and Biomedicine, main ontology" ; - "COB" ; - "http://purl.obolibrary.org/obo/cob.owl" . +_:b130 "Melissa Haendel"; + "haendel@ohsu.edu" . - - "base module for COB" ; - "COB base module" ; - "http://purl.obolibrary.org/obo/cob/cob-base.owl" . +_:b131 "Mark Engelstad"; + "engelsta@ohsu.edu" . - - "COB with native IDs preserved rather than rewired to OBO IDs" ; - "COB native module" ; - "http://purl.obolibrary.org/obo/cob/cob-native.owl" . +_:b132 "Lindsay Cowell"; + "Lindsay.Cowell@utsouthwestern.edu" . - - "COB to external" ; - ; - "http://purl.obolibrary.org/obo/cob/cob-to-external.owl" . +_:b133 "Maria Herrero"; + "maria.herrero@kcl.ac.uk" . - - "demo of COB including subsets of other ontologies (Experimental, for demo purposes only)" ; - "COB demo ontology (experimental)" ; - "http://purl.obolibrary.org/obo/cob/products/demo-cob.owl" . +_:b134 "Jonathan Bard"; + "J.Bard@ed.ac.uk" . - - "COLAO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research. It has been built using the Ontology Develoment Kit, with the Ontology for the Anatomy of the Insect Skeleto-Muscular system (AISM) as a backbone." ; - "Coleoptera Anatomy Ontology (COLAO)" ; - ; - "anatomy and development" ; - "https://github.com/insect-morphology/colao/issues" ; - "http://purl.obolibrary.org/obo/colao.owl" ; - _:b47 ; - ; - ; - . +_:b135 "Luis González-Montaña"; + "lagonzalezmo@unal.edu.co" . -_:b47 "Jennifer C. Giron" ; - "entiminae@gmail.com" . +_:b136 "Jonathan Bard"; + "J.Bard@ed.ac.uk" . - - "http://purl.obolibrary.org/obo/colao.owl" . +_:b137 "Terry Hayamizu"; + "Terry.Hayamizu@jax.org" . - - "http://purl.obolibrary.org/obo/colao.obo" . +_:b138 "Pankaj Jaiswal"; + "jaiswalp@science.oregonstate.edu" . - - "CRO" ; - "active" ; - "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability." ; - "Contributor Role Ontology" ; - ; - "information" ; - "https://github.com/data2health/contributor-role-ontology/issues" ; - "http://purl.obolibrary.org/obo/cro.owl" ; - _:b48 ; - ; - . +_:b139 "Marc Ciriello"; + "Marc_Ciriello@hms.harvard.edu" . - - ; - "CC BY 2.0" . +_:b140 "eVOC mailing list"; + "evoc@sanbi.ac.za" . -_:b48 "Marijane White" ; - "whimar@ohsu.edu" . +_:b141 "Clare Pilgrim"; + "cp390@cam.ac.uk" . - - "CRO" ; - "http://purl.obolibrary.org/obo/cro.owl" . +_:b142 "Burke Squires"; + "burkesquires@gmail.com" . - - "CTENO" ; - "active" ; - ; - ; - ; - "An anatomical and developmental ontology for ctenophores (Comb Jellies)" ; - "Ctenophore Ontology" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/ctenophore-ontology/issues" ; - "http://purl.obolibrary.org/obo/cteno.owl" ; - _:b49 ; - ; - . +_:b143 "Plant Ontology Administrators"; + "po-discuss@plantontology.org" . - - "Ctenophore" . +_:b144 "Peter Midford"; + "peteremidford@yahoo.com" . -_:b49 "Chris Mungall" ; - "cjmungall@lbl.gov" . +_:b145 "INOH curators"; + "curator@inoh.org" . - - "http://purl.obolibrary.org/obo/cteno.owl" . +_:b146 "Jie Zheng"; + "zhengj2007@gmail.com" . - - "CTO" ; - "active" ; - "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials." ; - "CTO: Core Ontology of Clinical Trials" ; - ; - "health" ; - "https://github.com/ClinicalTrialOntology/CTO/issues" ; - "http://purl.obolibrary.org/obo/cto.owl" ; - _:b50 ; - ; - . +_:b147 "InterPro Help"; + "interhelp@ebi.ac.uk" . -_:b50 "Dr. Alpha Tom Kodamullil" ; - "alpha.tom.kodamullil@scai.fraunhofer.de" . +_:b148 "Christopher Baker"; + "bakerc@unb.ca" . - - "http://purl.obolibrary.org/obo/cto.owl" . +_:b149 "Peter Midford"; + "peteremidford@yahoo.com" . - - "CVDO" ; - "active" ; - "An ontology to describe entities related to cardiovascular diseases" ; - "Cardiovascular Disease Ontology" ; - ; - "health" ; - "https://github.com/OpenLHS/CVDO/issues" ; - "http://purl.obolibrary.org/obo/cvdo.owl" ; - _:b51 ; - ; - . +_:b150 "Julie Thompson"; + "julie@igbmc.u-strasbg.fr" . -_:b51 "Paul Fabry" ; - "paul.fabry@usherbrooke.ca" . +_:b151 "Jonathan Bard"; + "j.bard@ed.ac.uk" . - - "http://purl.obolibrary.org/obo/cvdo.owl" . +_:b152 "Thorsten Henrich"; + "henrich@embl.de" . - - "DDANAT" ; - "active" ; - ; - "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum" ; - "Dictyostelium discoideum anatomy" ; - ; - ; - "anatomy and development" ; - "https://github.com/dictyBase/migration-data/issues" ; - "http://purl.obolibrary.org/obo/ddanat.owl" ; - _:b52 ; - ; - ; - ; - . +_:b153 "Pantelis Topalis"; + "topalis@imbb.forth.gr" . - - "Dictyostelium discoideum" . +_:b154 "Chris Stoeckert"; + "stoeckrt@pcbi.upenn.edu" . - - "An anatomy ontology to represent biological knowledge in Dictyostelium discoideum" . +_:b155 "Fahim Imam"; + "smtifahim@gmail.com" . -_:b52 "Petra Fey" ; - "pfey@northwestern.edu" . +_:b156 "Fahim Imam"; + "smtifahim@gmail.com" . - - "http://purl.obolibrary.org/obo/ddanat.owl" . +_:b157 "Lucas Leclere"; + "lucas.leclere@obs-banyuls.fr" . - - "http://purl.obolibrary.org/obo/ddanat.obo" . +_:b158 "Fahim Imam"; + "smtifahim@gmail.com" . - - "DDPHENO" ; - "active" ; - ; - "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum." ; - "Dictyostelium discoideum phenotype ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/dicty-phenotype-ontology/issues" ; - "http://purl.obolibrary.org/obo/ddpheno.owl" ; - _:b53 ; - ; - ; - ; - . +_:b159 "Schober Daniel"; + "schober@imbi.uni-freiburg.de" . - - "dictyBase and the Dicty Stock Center (version 2.0) - a progress report" . +_:b160 "Chris Mungall"; + "cjmungall@lbl.gov" . -_:b53 "Petra Fey" ; - "pfey@northwestern.edu" . +_:b161 "Asiyah Yu Lin"; + "linikujp@gmail.com" . - - "http://purl.obolibrary.org/obo/ddpheno.owl" . +_:b162 "Mathias Brochhausen"; + "mbrochhausen@gmail.com" . - - "http://purl.obolibrary.org/obo/ddpheno.obo" . +_:b163 "Pankaj Jaiswal"; + "jaiswalp@science.oregonstate.edu" . - - "DIDEO" ; - "active" ; - "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology" ; - "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/DIDEO/DIDEO/issues" ; - "http://purl.obolibrary.org/obo/dideo.owl" ; - _:b54 ; - ; - . +_:b164 "Thorsten Henrich"; + "henrich@embl.de" . -_:b54 "Mathias Brochhausen" ; - "mbrochhausen@gmail.com" . +_:b165 "Plant Ontology Administrators"; + "po-discuss@plantontology.org" . - - "http://purl.obolibrary.org/obo/dideo.owl" . +_:b166 "Matt Berriman"; + "mb4@sanger.ac.uk" . - - "DISDRIV" ; - "active" ; - ; - "Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI." ; - "Disease Drivers Ontology" ; - ; - "health" ; - "https://github.com/DiseaseOntology/DiseaseDriversOntology/issues" ; - ; - "http://purl.obolibrary.org/obo/disdriv.owl" ; - _:b55 ; - ; - ; - . +_:b167 "Satya S. Sahoo"; + "satya30@uga.edu" . - - "Homo sapiens" . +_:b168 "Jennifer Smith"; + "jrsmith@mcw.edu" . - - "DO Browser" ; - "DO" . +_:b169 "John Garavelli"; + "john.garavelli@ebi.ac.uk" . -_:b55 "Lynn Schriml" ; - "lynn.schriml@gmail.com" . +_:b170 "Stephen Larson"; + "slarson@ncmir.ucsd.edu" . - - "http://purl.obolibrary.org/obo/disdriv.owl" . +_:b171 "SEP developers via the PSI and MSI mailing lists"; + "psidev-gps-dev@lists.sourceforge.net" . - - "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data" . +_:b172 "Adrien Coulet"; + "Adrien.Coulet@loria.fr" . - - "The Human Disease Ontology 2022 update" . +_:b173 "Pierre Sprumont"; + "pierre.sprumont@unifr.ch" . - - "DO Browser" ; - "DO" . +_:b174 "Pierre Sprumont"; + "pierre.sprumont@unifr.ch" . -_:b43 "Lynn Schriml" ; - "lynn.schriml@gmail.com" . +_:b175 "Wasila Dahdul"; + "wasila.dahdul@usd.edu" . - - "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies." ; - "http://purl.obolibrary.org/obo/doid.owl" . +_:b176 "Wasila Dahdul"; + "wasila.dahdul@usd.edu" . - - "Disease Ontology, OBO format. This file omits the equivalent axioms." ; - "http://purl.obolibrary.org/obo/doid.obo" . +_:b177 "Mike Cherry"; + "cherry@genome.stanford.edu" . - - "FBcv" ; - "active" ; - ; - "An ontology of commonly encountered and/or high level Drosophila phenotypes." ; - "Drosophila Phenotype Ontology" ; - ; - ; - "phenotype" ; - "https://github.com/FlyBase/drosophila-phenotype-ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/dpo.owl" ; - _:b56 ; - ; - ; - ; - . +_:b178 "Leszek Vincent"; + "Leszek@missouri.edu" . - - "Drosophila" . +_:b179 "Bjoern Peters"; + "bpeters@lji.org" . - - "The Drosophila phenotype ontology." . +_:b180 "Jennifer C. Giron"; + "entiminae@gmail.com" . - - "FlyBase Browser" ; - "FB" . +_:b181 "Marijane White"; + "whimar@ohsu.edu" . -_:b56 "Clare Pilgrim" ; - "cp390@cam.ac.uk" . +_:b182 "Chris Mungall"; + "cjmungall@lbl.gov" . - - "http://purl.obolibrary.org/obo/dpo.owl" . +_:b183 "Jennifer C. Girón"; + "entiminae@gmail.com" . - - "http://purl.obolibrary.org/obo/dpo.obo" . +_:b184 "Dr. Alpha Tom Kodamullil"; + "alpha.tom.kodamullil@scai.fraunhofer.de" . - - "http://purl.obolibrary.org/obo/dpo.json" . +_:b185 "Paul Fabry"; + "paul.fabry@usherbrooke.ca" . - - "FBcv" ; - "active" ; - "A structured controlled vocabulary used for various aspects of annotation by FlyBase." ; - "FlyBase Controlled Vocabulary" ; - ; - "organisms" ; - "https://github.com/FlyBase/flybase-controlled-vocabulary/issues" ; - ; - "http://purl.obolibrary.org/obo/fbcv.owl" ; - _:b57 ; - ; - ; - ; - . +_:b186 "Petra Fey"; + "pfey@northwestern.edu" . - - "DRON" ; - "active" ; - "An ontology to support comparative effectiveness researchers studying claims data." ; - "The Drug Ontology" ; - ; - ; - "health" ; - "https://github.com/ufbmi/dron/issues" ; - "http://purl.obolibrary.org/obo/dron.owl" ; - _:b58 ; - ; - . +_:b187 "Petra Fey"; + "pfey@northwestern.edu" . - - "Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request" . +_:b188 "Mathias Brochhausen"; + "mbrochhausen@gmail.com" . -_:b58 "William Hogan" ; - "hoganwr@gmail.com" . +_:b189 "Lynn Schriml"; + "lynn.schriml@gmail.com" . - - "http://purl.obolibrary.org/obo/dron.owl" . +_:b190 "Lynn Schriml"; + "lynn.schriml@gmail.com" . - - "DUO" ; - "active" ; - ; - ; - "DUO is an ontology which represent data use conditions." ; - "Data Use Ontology" ; - ; - "information" ; - "https://github.com/EBISPOT/DUO/issues" ; - "http://purl.obolibrary.org/obo/duo.owl" ; - _:b59 ; - ; - . +_:b191 "Clare Pilgrim"; + "cp390@cam.ac.uk" . -_:b59 "Melanie Courtot" ; - "mcourtot@gmail.com" . +_:b192 "William Hogan"; + "hoganwr@gmail.com" . - - "http://purl.obolibrary.org/obo/duo.owl" . +_:b193 "Melanie Courtot"; + "mcourtot@gmail.com" . - - "ECAO" ; - "active" ; - ; - ; - ; - "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586)." ; - "The Echinoderm Anatomy and Development Ontology" ; - ; - "anatomy and development" ; - "https://github.com/echinoderm-ontology/ecao_ontology/issues" ; - "http://purl.obolibrary.org/obo/ecao.owl" ; - _:b60 ; - ; - ; - . +_:b194 "Hector Escriva"; + "hescriva@obs-banyuls.fr" . -_:b60 "Charles Ettensohn" ; +_:b195 "Charles Ettensohn"; "ettensohn@cmu.edu" . - - "http://purl.obolibrary.org/obo/ecao.owl" . +_:b196 "Michelle Giglio"; + "mgiglio@som.umaryland.edu" . - - "http://purl.obolibrary.org/obo/ecao.obo" . +_:b197 "Pier Luigi Buttigieg"; + "p.buttigieg@gmail.com" . - - "ECO" ; - "active" ; - "An ontology for experimental and other evidence statements." ; - "Evidence and Conclusion Ontology" ; - ; - ; - ; - ; - "investigations" ; - ; - "https://github.com/evidenceontology/evidenceontology/issues" ; - ; - "http://purl.obolibrary.org/obo/eco.owl" ; - _:b61 ; - ; - ; - . +_:b198 "Anne Thessen"; + "annethessen@gmail.com" . - - "ECO: the Evidence and Conclusion Ontology, an update for 2022." . +_:b199 "Terry Hayamizu"; + "Terry.Hayamizu@jax.org" . - - "ECO, the Evidence & Conclusion Ontology: community standard for evidence information." . +_:b200 "Pier Luigi Buttigieg"; + "pier.buttigieg@awi.de" . - - "Standardized description of scientific evidence using the Evidence Ontology (ECO)" . +_:b201 "Alpha Tom Kodamullil"; + "alpha.tom.kodamullil@scai.fraunhofer.de" . - - "NSF ABI-1458400" . +_:b202 "Xingyun Liu"; + "xyz19940216@163.com" . - - "ECO Browser" ; - "ECO" . +_:b203 "Anne Thessen"; + "annethessen@gmail.com" . -_:b61 "Michelle Giglio" ; - "mgiglio@som.umaryland.edu" . +_:b204 "Val Wood"; + "vw253@cam.ac.uk" . - - "http://purl.obolibrary.org/obo/eco.owl" . +_:b205 "Stacia R Engel"; + "stacia@stanford.edu" . - - "http://purl.obolibrary.org/obo/eco.obo" . +_:b206 "Damien Goutte-Gattat"; + "damien@gerbi-gmb.de" . - - "ECOCORE" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms." ; - "An ontology of core ecological entities" ; - ; - "environment" ; - "https://github.com/EcologicalSemantics/ecocore/issues" ; - "http://purl.obolibrary.org/obo/ecocore.owl" ; - _:b62 ; - ; - ; - . +_:b207 "Clare Pilgrim"; + "cp390@cam.ac.uk" . - - "PCO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - "An ontology about groups of interacting organisms such as populations and communities" ; - "Population and Community Ontology" ; - ; - "environment" ; - "https://github.com/PopulationAndCommunityOntology/pco/issues" ; - "http://purl.obolibrary.org/obo/pco.owl" ; - _:b63 ; - ; - . +_:b208 "Clare Pilgrim"; + "cp390@cam.ac.uk" . -_:b62 "Pier Luigi Buttigieg" ; - "p.buttigieg@gmail.com" . +_:b209 "Clare Pilgrim"; + "cp390@cam.ac.uk" . - - "http://purl.obolibrary.org/obo/ecocore.owl" . +_:b210 "Georgeta Bordea"; + "georgeta.bordea@u-bordeaux.fr" . - - "http://purl.obolibrary.org/obo/ecocore.obo" . +_:b211 "Robert Hoehndorf"; + "robert.hoehndorf@kaust.edu.sa" . - - "ECTO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)." ; - "Environmental conditions, treatments and exposures ontology" ; - ; - "environment" ; - "https://github.com/EnvironmentOntology/environmental-exposure-ontology/issues" ; - "http://purl.obolibrary.org/obo/ecto.owl" ; - _:b64 ; - ; - ; - ; - ; - ; - ; - . +_:b212 "Pol Castellano Escuder"; + "polcaes@gmail.com" . - - "ExO" ; - "active" ; - "Vocabularies for describing exposure data to inform understanding of environmental health." ; - "Exposure ontology" ; - ; - "health" ; - "https://github.com/CTDbase/exposure-ontology/issues" ; - "http://purl.obolibrary.org/obo/exo.owl" ; - _:b65 ; - ; - ; - . +_:b213 "Damion Dooley"; + "damion_dooley@sfu.ca" . - - "MAXO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations." ; - "Medical Action Ontology" ; - ; - "health" ; - "https://github.com/monarch-initiative/MAxO/issues" ; - "http://purl.obolibrary.org/obo/maxo.owl" ; - _:b66 ; - ; - ; - ; - ; - ; - ; - . +_:b214 "Meghan Balk"; + "meghan.balk@gmail.com" . - - "NBO" ; - "active" ; - "An ontology of human and animal behaviours and behavioural phenotypes" ; - "Neuro Behavior Ontology" ; - ; - ; - "biological systems" ; - "https://github.com/obo-behavior/behavior-ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/nbo.owl" ; - _:b67 ; - ; - . +_:b215 "Val Wood"; + "vw253@cam.ac.uk" . - - "NCIT" ; - "active" ; - "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental." ; - "NCI Thesaurus OBO Edition" ; - ; - "health" ; - "https://github.com/ncit-obo-org/ncit-obo-edition/issues" ; - "http://purl.obolibrary.org/obo/ncit.owl" ; - _:b68 ; - ; - ; - . +_:b216 "William Hogan"; + "hoganwr@gmail.com" . -_:b64 "Anne Thessen" ; - "annethessen@gmail.com" . +_:b217 "Andy Deans"; + "adeans@psu.edu" . - - "http://purl.obolibrary.org/obo/ecto.owl" . +_:b218 "Lynn Schriml"; + "lschriml@som.umaryland.edu" . - - "http://purl.obolibrary.org/obo/ecto.obo" . +_:b219 "Rebecca Jackson"; + "rbca.jackson@gmail.com" . - - "http://purl.obolibrary.org/obo/ecto.json" . +_:b220 "Damion Dooley"; + "damion_dooley@sfu.ca" . - - "http://purl.obolibrary.org/obo/ecto/ecto-base.owl" . +_:b221 "Matthew Brush"; + "mhb120@gmail.com" . - - "http://purl.obolibrary.org/obo/ecto/ecto-base.obo" . +_:b222 "Bill Hogan"; + "hoganwr@gmail.com" . - - "http://purl.obolibrary.org/obo/ecto/ecto-base.json" . +_:b223 "Nathan Edwards"; + "nje5@georgetown.edu" . - - "EMAPA" ; - "active" ; - ; - "An ontology for mouse anatomy covering embryonic development and postnatal stages." ; - "Mouse Developmental Anatomy Ontology" ; - ; - ; - ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/developmental-mouse-anatomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/emapa.owl" ; - _:b69 ; - ; - ; - . +_:b224 "Suzi Aleksander"; + "suzia@stanford.edu" . - - "Mus" . +_:b225 "Danielle Welter"; + "dwelter.ontologist@gmail.com" . - - "An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature" . +_:b226 "Matt Yoder"; + "diapriid@gmail.com" . - - "EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update" . +_:b227 "Andrew G. McArthur"; + "mcarthua@mcmaster.ca" . - - "Mouse Anatomy Ontologies: Enhancements and Tools for Exploring and Integrating Biomedical Data" . +_:b228 "Frederic Bastian"; + "bgee@sib.swiss" . - - "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)" . +_:b229 "Frédéric Bastian"; + "frederic.bastian@unil.ch" . -_:b69 "Terry Hayamizu" ; - "Terry.Hayamizu@jax.org" . +_:b230 "Fernanda Dorea"; + "fernanda.dorea@sva.se" . - - "http://purl.obolibrary.org/obo/emapa.owl" . +_:b231 "Amanda Hicks"; + "aellenhicks@gmail.com" . - - "http://purl.obolibrary.org/obo/emapa.obo" . +_:b232 "Jie Zheng"; + "zhengj2007@gmail.com" . - - "The environment ontology: contextualising biological and biomedical entities" . +_:b233 "Mathias Brochhausen"; + "mbrochhausen@gmail.com" . - - "The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation" . +_:b234 "Meng LIU"; + "liumeng94@sjtu.edu.cn" . -_:b4 "Pier Luigi Buttigieg" ; - "pier.buttigieg@awi.de" . +_:b235 "Yongqun Oliver He"; + "yongqunh@med.umich.edu" . - - "main ENVO OWL release" ; - "http://purl.obolibrary.org/obo/envo.owl" . +_:b236 "Lindsay Cowell"; + "Lindsay.Cowell@utsouthwestern.edu" . - - "ENVO in obographs JSON format" ; - "http://purl.obolibrary.org/obo/envo.json" . +_:b237 "Yongqun Oliver He"; + "yongqunh@med.umich.edu" . - - "ENVO in OBO Format. May be lossy" ; - "http://purl.obolibrary.org/obo/envo.obo" . +_:b238 "Ramona Walls"; + "rlwalls2008@gmail.com" . - - "OBO-Basic edition of ENVO" ; - "http://purl.obolibrary.org/obo/envo/subsets/envo-basic.obo" . +_:b239 "Paul Fabry"; + "paul.fabry@usherbrooke.ca" . - - "Earth Microbiome Project subset" ; - "http://purl.obolibrary.org/obo/envo/subsets/envoEmpo.owl" . +_:b240 "Luis A. Gonzalez-Montana"; + "lagonzalezmo@unal.edu.co" . - - "GSC Lite subset of ENVO" ; - "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo" ; - . +_:b241 "Terry Hayamizu"; + "Terry.Hayamizu@jax.org" . - - "EPIO" ; - "active" ; - ; - "A application driven Epilepsy Ontology with official terms from the ILAE." ; - "Epilepsy Ontology" ; - ; - "health" ; - "https://github.com/SCAI-BIO/EpilepsyOntology/issues" ; - "http://purl.obolibrary.org/obo/epio.owl" ; - _:b70 ; - ; - ; - . +_:b242 "Leigh Carmody"; + "Leigh.Carmody@jax.org" . -_:b70 "Alpha Tom Kodamullil" ; - "alpha.tom.kodamullil@scai.fraunhofer.de" . +_:b243 "Citlalli Mejía-Almonte"; + "citlalli.mejiaalmonte@gmail.com" . - - "http://purl.obolibrary.org/obo/epio.owl" . +_:b244 "Tuan Amith"; + "muamith@utmb.edu" . - - "http://purl.obolibrary.org/obo/EPIO_merged.owl" . +_:b245 "Janna Hastings"; + "janna.hastings@gmail.com" . - - "EXMO" ; - "active" ; - "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise." ; - "Exercise Medicine Ontology" ; - ; - ; - "health" ; - "https://github.com/Exercise-Medicine-Ontology/EXMO/issues" ; - "http://purl.obolibrary.org/obo/exmo.owl" ; - _:b71 ; - ; - . +_:b246 "Janna Hastings"; + "janna.hastings@gmail.com" . - - "Core reference ontology for individualized exercise prescription" . +_:b247 "Janna Hastings"; + "janna.hastings@gmail.com" . -_:b71 "Xingyun Liu" ; - "xyz19940216@163.com" . +_:b248 "Luana Licata"; + "luana.licata@gmail.com" . - - "http://purl.obolibrary.org/obo/exmo.owl" . +_:b249 "Barry Smith"; + "phismith@buffalo.edu" . -_:b65 "Anne Thessen" ; - "annethessen@gmail.com" . +_:b250 "Hilmar Lapp"; + "hilmar.lapp@duke.edu" . - - "http://purl.obolibrary.org/obo/exo.owl" . +_:b251 "Jennifer Smith"; + "jrsmith@mcw.edu" . - - "http://purl.obolibrary.org/obo/exo.obo" . +_:b252 "Frédéric Bastian"; + "frederic.bastian@unil.ch" . - - "FAO" ; - "active" ; - ; - "A structured controlled vocabulary for the anatomy of fungi." ; - "Fungal gross anatomy" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/fungal-anatomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/fao.owl" ; - _:b72 ; - ; - ; - . +_:b253 "Pierre-Alain Binz"; + "pierre-alain.binz@chuv.ch" . - - "Fungal" . +_:b254 "Sabrina Toro"; + "Sabrina@tislab.org" . -_:b72 "Val Wood" ; - "vw253@cam.ac.uk" . +_:b255 "Colin Batchelor"; + "batchelorc@rsc.org" . - - "http://purl.obolibrary.org/obo/fao.owl" . +_:b256 "Sue Bello"; + "pheno@jax.org" . - - "http://purl.obolibrary.org/obo/fao.obo" . +_:b257 "Paul Schofield"; + "pns12@hermes.cam.ac.uk" . - - "FBbi" ; - "active" ; - ; - ; - ; - "An ontology for the description of sample preparation, visualization, and imaging methods used in biomedical research." ; - "Biological Imaging Methods Ontology" ; - ; - "investigations" ; - "https://github.com/foundingGIDE/fbbi/issues" ; - ; - "http://purl.obolibrary.org/obo/fbbi.owl" ; - _:b73 ; - ; - ; - ; - ; - . +_:b258 "Mathias Brochhausen"; + "mbrochhausen@uams.edu" . - - "BioPortal Browser" ; - "BioPortal" . - -_:b73 "Damien Goutte-Gattat" ; - "damien@gerbi-gmb.de" . - - - "http://purl.obolibrary.org/obo/fbbi.owl" . +_:b259 "Bjoern Peters"; + "bpeters@lji.org" . - - "http://purl.obolibrary.org/obo/fbbi.obo" . + + "Gene Ontology AmiGO 2 Browser"; + "AmiGO" . - - "http://purl.obolibrary.org/obo/fbbi/fbbi-base.owl" . + + "Gene Ontology AmiGO 2 Browser"; + "AmiGO (SUBSET)" . - - "http://purl.obolibrary.org/obo/fbbi/fbbi-base.obo" . + + "Bgee gene expression queries"; + "Bgee (gene expression)" . - - "FBbt" ; - "active" ; - ; - "An ontology representing the gross anatomy of Drosophila melanogaster." ; - "Drosophila gross anatomy" ; - ; - ; - ; - ; - ; - "anatomy and development" ; - "http://purl.obolibrary.org/obo/fbbt/tracker" ; - ; - ; - ; - "http://purl.obolibrary.org/obo/fbbt.owl" ; - _:b74 ; - ; - ; - ; - ; - ; - . + + "RNA Ontology jOWL Browser"; + "RNAO" . - - "The Drosophila anatomy ontology" . + + "BioPortal Browser"; + "BioPortal" . - - "A strategy for building neuroanatomy ontologies" . + + "BioPortal Browser"; + "BioPortal" . - - "The Virtual Fly Brain Browser and Query Interface" . + + "BioPortal Browser"; + "BioPortal" . - - "FlyBase: anatomical data, images and queries" . + + "BioPortal Browser"; + "BioPortal" . - - "FlyBase Browser" ; - "FB" . + + "BioPortal Browser"; + "BioPortal" . - - "Virtual Fly Brain" ; - "VFB" . + + "Planteome browser"; + "Planteome" . - - "BioPortal Browser" ; - "BioPortal" . + + "Planteome browser"; + "Planteome" . -_:b74 "Clare Pilgrim" ; - "cp390@cam.ac.uk" . + + "Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics." . - - "http://purl.obolibrary.org/obo/fbbt.owl" . + + ; + "CC BY 3.0" . - - "http://purl.obolibrary.org/obo/fbbt.obo" . + + ; + "CC BY 4.0" . - - "http://purl.obolibrary.org/obo/fbbt.json" . + + ; + "CC0 1.0" . - - "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.owl" . + + "FANTOM5 Data Portal"; + "FANTOM5" . - - "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.obo" . + + "FlyBase Browser"; + "FB" . - "FlyBase Browser" ; + "FlyBase Browser"; "FB" . -_:b57 "Clare Pilgrim" ; - "cp390@cam.ac.uk" . - - - "http://purl.obolibrary.org/obo/fbcv.owl" . - - - "http://purl.obolibrary.org/obo/fbcv.obo" . - - - "http://purl.obolibrary.org/obo/fbcv.json" . - - - "FBdv" ; - "active" ; - ; - "A structured controlled vocabulary of the development of Drosophila melanogaster." ; - "Drosophila development" ; - ; - "anatomy and development" ; - "http://purl.obolibrary.org/obo/fbdv/tracker" ; - ; - "http://purl.obolibrary.org/obo/fbdv.owl" ; - _:b75 ; - ; - ; - ; - ; - ; - . + + "FlyBase Browser"; + "FB" . - "FlyBase Browser" ; + "FlyBase Browser"; "FB" . -_:b75 "Clare Pilgrim" ; - "cp390@cam.ac.uk" . + + "Monarch Phenotype Page"; + "Monarch" . - - "http://purl.obolibrary.org/obo/fbdv.owl" . + + "Monarch Phenotype Page"; + "Monarch" . - - "http://purl.obolibrary.org/obo/fbdv.obo" . + + "Artistic License 2.0" . - - "http://purl.obolibrary.org/obo/fbdv.json" . + + "PRO Home"; + "PRO" . - - "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.owl" . + + "Includes axioms linking to other ontologies, but no imports of those ontologies"; + "http://purl.obolibrary.org/obo/BMONT.owl" . - - "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.obo" . + + "http://purl.obolibrary.org/obo/EPIO_merged.owl" . - - "FIDEO" ; - "active" ; - "Food-Drug interactions automatically extracted from scientific literature" ; - "Food Interactions with Drugs Evidence Ontology" ; - ; - "diet, metabolomics, and nutrition" ; - "https://gitub.u-bordeaux.fr/erias/fideo/issues" ; - "http://purl.obolibrary.org/obo/fideo.owl" ; - _:b76 ; - ; - . + + ; + "inactive"; + "Amphibian gross anatomy"; + "anatomy and development"; + _:b122; + . -_:b76 "Georgeta Bordea" ; - "georgeta.bordea@u-bordeaux.fr" . + + "ADO"; + "active"; + ; + "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelated entities that demonstrate the network of the understanding on Alzheimer's disease and can be readily applied for text mining."; + "Alzheimer's Disease Ontology"; + ; + "health"; + "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO/issues"; + "http://purl.obolibrary.org/obo/ado.owl"; + _:b0; + ; + . - - "http://purl.obolibrary.org/obo/fideo.owl" . + + "http://purl.obolibrary.org/obo/ado.owl" . - - "FLOPO" ; - "active" ; - ; - "Traits and phenotypes of flowering plants occurring in digitized Floras" ; - "Flora Phenotype Ontology" ; - ; - ; - "phenotype" ; - "https://github.com/flora-phenotype-ontology/flopoontology/issues" ; - "http://purl.obolibrary.org/obo/flopo.owl" ; - _:b77 ; - ; - . + + "inactive"; + "Animal natural history and life history"; + "organisms"; + _:b123; + . - - "Viridiplantae" . + + "AEO"; + "inactive"; + "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology"; + "Anatomical Entity Ontology"; + ; + "anatomy and development"; + "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"; + "http://purl.obolibrary.org/obo/aeo.owl"; + _:b110; + ; + . - - "The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants" . + + "http://purl.obolibrary.org/obo/aeo.owl" . -_:b77 "Robert Hoehndorf" ; - "robert.hoehndorf@kaust.edu.sa" . + + "inactive"; + "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events"; + "Adverse Event Reporting Ontology"; + ; + "health"; + _:b125; + ; + . - - "http://purl.obolibrary.org/obo/flopo.owl" . + + "http://purl.obolibrary.org/obo/aero.owl" . - - "FOBI" ; - "active" ; - ; - ; - "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data" ; - "Food-Biomarker Ontology" ; - ; - ; - ; - "diet, metabolomics, and nutrition" ; - "https://github.com/pcastellanoescuder/FoodBiomarkerOntology/issues" ; - "http://purl.obolibrary.org/obo/fobi.owl" ; - _:b78 ; - ; - . + + "AfPO"; + "active"; + "AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic, anthropological and genetic data relating to African people in a standardised and structured format. The AfPO can be employed to classify African study participants comprehensively in prospective research studies. It can also be used to classify past study participants by mapping them using a language or ethnicity identifier or synonyms."; + "African Population Ontology"; + ; + "organisms"; + "https://github.com/h3abionet/afpo/issues"; + "http://purl.obolibrary.org/obo/afpo.owl"; + _:b1; + ; + ; + ; + . - - "FOBI: an ontology to represent food intake data and associate it with metabolomic data" . + + "A direct translation of the AfPO (OWL edition) into OBOGraph JSON format"; + "AfPO (obographs JSON edition)"; + "http://purl.obolibrary.org/obo/afpo.json"; + . - - "The fobitools framework: the first steps towards food enrichment analysis" . + + "A direct translation of the AfPO (OWL edition) into OBO format"; + "AfPO (OBO edition)"; + "http://purl.obolibrary.org/obo/afpo.obo"; + . -_:b78 "Pol Castellano Escuder" ; - "polcaes@gmail.com" . + + "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies"; + "AfPO (OWL edition)"; + "http://purl.obolibrary.org/obo/afpo.owl" . - - "FOBI is an ontology to represent food intake data and associate it with metabolomic data" ; - "owl-rdf/xml" ; - "http://purl.obolibrary.org/obo/fobi.owl" . + + "AGRO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments"; + "Agronomy Ontology"; + ; + ; + "agriculture"; + "https://github.com/AgriculturalSemantics/agro/issues/"; + "http://purl.obolibrary.org/obo/agro.owl"; + _:b112; + ; + . - - "inactive" ; - "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments." ; - "Plant Environment Ontology" ; - ; - ; - "environment" ; - "https://github.com/Planteome/plant-environment-ontology/issues" ; - _:b79 ; - ; - ; - ; - . + + "Contains all AgrO terms and links to other relevant ontologies."; + "AgrO"; + "http://purl.obolibrary.org/obo/agro.owl" . - - "FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration" . + + "AISM"; + "active"; + ; + ; + ; + ; + ; + ; + "The AISM contains terms used in insect biodiversity research for describing structures of the exoskeleton and the skeletomuscular system. It aims to serve as the basic backbone of generalized terms to be expanded with order-specific terminology."; + "Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)"; + ; + "anatomy and development"; + "https://github.com/insect-morphology/aism/issues"; + "http://purl.obolibrary.org/obo/aism.owl"; + _:b183; + ; + ; + ; + . -_:b5 "Damion Dooley" ; - "damion_dooley@sfu.ca" . + + "http://purl.obolibrary.org/obo/aism.json" . - - "FoodOn ontology with import file references and over 9,000 food products" ; - "owl-rdf/xml" ; - "http://purl.obolibrary.org/obo/foodon.owl" . + + "http://purl.obolibrary.org/obo/aism.obo" . - - "FoodOn core ontology (currently the same as foodon.owl)" ; - "owl-rdf/xml" ; - "http://purl.obolibrary.org/obo/foodon_core.owl" . + + "http://purl.obolibrary.org/obo/aism.owl" . - - "FOVT" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA)." ; - "FuTRES Ontology of Vertebrate Traits" ; - ; - "phenotype" ; - "https://github.com/futres/fovt/issues" ; - "http://purl.obolibrary.org/obo/fovt.owl" ; - _:b80 ; - ; - ; - ; - ; - . + + "AMPHX"; + "active"; + ; + "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)."; + "The Amphioxus Development and Anatomy Ontology"; + ; + "anatomy and development"; + "https://github.com/EBISPOT/amphx_ontology/issues"; + "http://purl.obolibrary.org/obo/amphx.owl"; + _:b194; + ; + ; + . - - "OBA" ; - "active" ; - "A collection of biological attributes (traits) covering all kingdoms of life." ; - "Ontology of Biological Attributes" ; - ; - ; - "phenotype" ; - "https://github.com/obophenotype/bio-attribute-ontology/issues" ; - "http://purl.obolibrary.org/obo/oba.owl" ; - _:b81 ; - ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/amphx.obo" . -_:b80 "Meghan Balk" ; - "meghan.balk@gmail.com" . + + "http://purl.obolibrary.org/obo/amphx.owl" . - - "http://purl.obolibrary.org/obo/fovt.owl" . + + ; + "APO"; + "active"; + "A structured controlled vocabulary for the phenotypes of Ascomycete fungi"; + "Ascomycete phenotype ontology"; + ; + ; + "phenotype"; + "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues"; + "http://purl.obolibrary.org/obo/apo.owl"; + _:b205; + ; + ; + . - - "http://purl.obolibrary.org/obo/fovt.obo" . + + "http://purl.obolibrary.org/obo/apo.obo" . - - "http://purl.obolibrary.org/obo/fovt/fovt-base.owl" . + + "http://purl.obolibrary.org/obo/apo.owl" . - - "http://purl.obolibrary.org/obo/fovt/fovt-base.obo" . + + "APOLLO_SV"; + "active"; + "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation."; + "Apollo Structured Vocabulary"; + ; + ; + "health"; + "https://github.com/ApolloDev/apollo-sv/issues"; + "http://purl.obolibrary.org/obo/apollo_sv.owl"; + _:b216; + ; + . - - "FYPO" ; - "active" ; - ; - "FYPO is a formal ontology of phenotypes observed in fission yeast." ; - "Fission Yeast Phenotype Ontology" ; - ; - ; - "phenotype" ; - "https://github.com/pombase/fypo/issues" ; - "http://purl.obolibrary.org/obo/fypo.owl" ; - _:b82 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/apollo_sv.owl" . - - "S. pombe" . + + "ARO"; + "active"; + "Antibiotic resistance genes and mutations"; + "Antibiotic Resistance Ontology"; + ; + ; + "microbiology"; + "https://github.com/arpcard/aro/issues"; + "https://mailman.mcmaster.ca/mailman/listinfo/card-l"; + "http://purl.obolibrary.org/obo/aro.owl"; + _:b227; + ; + . - - "FYPO: The Fission Yeast Phenotype Ontology." . + + "http://purl.obolibrary.org/obo/aro.owl" . -_:b82 "Val Wood" ; - "vw253@cam.ac.uk" . + + ; + "inactive"; + "Amphibian taxonomy"; + "organisms"; + _:b126; + . - - "http://purl.obolibrary.org/obo/fypo.owl" . + + "inactive"; + "An application ontology built for beta cell genomics studies."; + "Beta Cell Genomics Ontology"; + ; + "anatomy and development"; + "https://github.com/obi-bcgo/bcgo/issues"; + _:b127; + ; + . - - "http://purl.obolibrary.org/obo/fypo.obo" . + + "http://purl.obolibrary.org/obo/bcgo.owl" . - - "GALLONT" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls." ; - "Plant Gall Ontology" ; - ; - "phenotype" ; - "https://github.com/adeans/gallont/issues" ; - "http://purl.obolibrary.org/obo/gallont.owl" ; - _:b83 ; - ; - ; - ; - . + + "BCO"; + "active"; + "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys."; + "Biological Collections Ontology"; + ; + ; + "organisms"; + "https://github.com/BiodiversityOntologies/bco/issues"; + "http://purl.obolibrary.org/obo/bco.owl"; + _:b238; + ; + . - - "PORO" ; - "active" ; - ; - ; - ; - "An ontology covering the anatomy of the taxon Porifera (sponges)" ; - "Porifera Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/porifera-ontology/issues" ; - "http://purl.obolibrary.org/obo/poro.owl" ; - _:b84 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/bco.owl" . -_:b83 "Andy Deans" ; - "adeans@psu.edu" . + + "BFO"; + "active"; + "The upper level ontology upon which OBO Foundry ontologies are built."; + "Basic Formal Ontology"; + ; + "upper"; + "https://github.com/BFO-ontology/BFO/issues"; + "https://groups.google.com/forum/#!forum/bfo-discuss"; + ; + "http://purl.obolibrary.org/obo/bfo.owl"; + _:b249; + ; + ; + . - - "http://purl.obolibrary.org/obo/gallont.owl" . + + "http://purl.obolibrary.org/obo/bfo.obo" . - - "http://purl.obolibrary.org/obo/gallont.json" . + + "http://purl.obolibrary.org/obo/bfo.owl" . - - "http://purl.obolibrary.org/obo/gallont.obo" . + + ; + "inactive"; + "Bilateria anatomy"; + "anatomy and development"; + _:b128; + ; + . - - "GAZ" ; - "active" ; - "A gazetteer constructed on ontological principles. The countries are actively maintained." ; - "Gazetteer" ; - ; - "environment" ; - "https://github.com/EnvironmentOntology/gaz/issues" ; - "https://groups.google.com/forum/#!forum/obo-gazetteer" ; - "http://purl.obolibrary.org/obo/gaz.owl" ; - _:b85 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/bila.owl" . -_:b85 "Lynn Schriml" ; - "lschriml@som.umaryland.edu" . + + "BMONT"; + "active"; + "An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects."; + "Biomarker Ontology"; + ; + "health"; + "https://github.com/SCAI-BIO/BiomarkerOntology/issues"; + ; + "http://purl.obolibrary.org/obo/bmont.owl"; + _:b2; + ; + . - - "http://purl.obolibrary.org/obo/gaz.owl" . + + "inactive"; + "Gene Regulation Ontology"; + "chemistry and biochemistry"; + _:b129; + . - - "http://purl.obolibrary.org/obo/gaz.obo" . + + "BSPO"; + "active"; + "An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces"; + "Biological Spatial Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/biological-spatial-ontology/issues"; + "http://purl.obolibrary.org/obo/bspo.owl"; + _:b13; + ; + ; + . - - "A country specific subset of the GAZ." ; - "GAZ countries" ; - "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl" . + + "http://purl.obolibrary.org/obo/bspo.obo" . - - "GECKO" ; - "active" ; - "An ontology to represent genomics cohort attributes" ; - "Genomics Cohorts Knowledge Ontology" ; - ; - "organisms" ; - "https://github.com/IHCC-cohorts/GECKO/issues" ; - "http://purl.obolibrary.org/obo/gecko.owl" ; - _:b86 ; - ; - . + + "http://purl.obolibrary.org/obo/bspo.owl" . -_:b86 "Rebecca Jackson" ; - "rbca.jackson@gmail.com" . + + "BTO"; + "active"; + "A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures."; + "BRENDA tissue / enzyme source"; + ; + ; + "anatomy and development"; + "https://github.com/BRENDA-Enzymes/BTO/issues"; + "http://purl.obolibrary.org/obo/bto.owl"; + _:b24; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/gecko.owl" . + + "http://purl.obolibrary.org/obo/bto.json" . - - "GENEPIO" ; - "active" ; - ; - ; - ; - ; - ; - "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks." ; - "Genomic Epidemiology Ontology" ; - ; - "health" ; - "https://github.com/GenEpiO/genepio/issues/" ; - "http://purl.obolibrary.org/obo/genepio.owl" ; - _:b87 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/bto.obo" . -_:b87 "Damion Dooley" ; - "damion_dooley@sfu.ca" . + + "http://purl.obolibrary.org/obo/bto.owl" . - - "http://purl.obolibrary.org/obo/genepio.owl" ; - . + + "CARO"; + "inactive"; + "An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species"; + "Common Anatomy Reference Ontology"; + ; + "anatomy and development"; + "https://github.com/obophenotype/caro/issues"; + _:b130; + ; + . - - "GENO" ; - "active" ; - "An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases." ; - "Genotype Ontology" ; - ; - "biological systems" ; - "https://github.com/monarch-initiative/GENO-ontology/issues" ; - "http://purl.obolibrary.org/obo/geno.owl" ; - _:b88 ; - ; - . + + "http://purl.obolibrary.org/obo/caro.owl" . -_:b88 "Matthew Brush" ; - "mhb120@gmail.com" . + + "CDAO"; + "active"; + "a formalization of concepts and relations relevant to evolutionary comparative analysis"; + "Comparative Data Analysis Ontology"; + ; + ; + "organisms"; + "https://github.com/evoinfo/cdao/issues"; + "http://purl.obolibrary.org/obo/cdao.owl"; + _:b35; + ; + . - - "GENO" ; - "http://purl.obolibrary.org/obo/geno.owl" . + + "http://purl.obolibrary.org/obo/cdao.owl" . - - "GEO" ; - "active" ; - "An ontology of geographical entities" ; - "Geographical Entity Ontology" ; - ; - "environment" ; - "https://github.com/ufbmi/geographical-entity-ontology/issues" ; - "http://purl.obolibrary.org/obo/geo.owl" ; - _:b89 ; - ; - . + + "CDNO"; + "active"; + ; + ; + ; + ; + ; + "CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet."; + "Compositional Dietary Nutrition Ontology"; + ; + ; + "diet, metabolomics, and nutrition"; + "https://github.com/CompositionalDietaryNutritionOntology/cdno/issues"; + "http://purl.obolibrary.org/obo/cdno.owl"; + _:b46; + ; + ; + . -_:b89 "Bill Hogan" ; - "hoganwr@gmail.com" . + + "http://purl.obolibrary.org/obo/cdno.obo" . - - "http://purl.obolibrary.org/obo/geo.owl" . + + "http://purl.obolibrary.org/obo/cdno.owl" . - - "GNO" ; - "active" ; - "GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels." ; - "Glycan Naming and Subsumption Ontology (GNOme)" ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/glygen-glycan-data/GNOme/issues" ; - ; - ; - "http://purl.obolibrary.org/obo/gno.owl" ; - _:b90 ; - ; - ; - ; - . + + ; + "inactive"; + "An anatomical and developmental ontology for cephalopods"; + "Cephalopod Ontology"; + ; + "anatomy and development"; + "https://github.com/obophenotype/cephalopod-ontology/issues"; + "http://purl.obolibrary.org/obo/ceph.owl"; + _:b111; + ; + ; + . - - "GNOme - Glycan Naming and Subsumption Ontology" . + + "oboformat edition"; + "http://purl.obolibrary.org/obo/ceph.obo" . - - "GNOme Glycan Structure Browser" ; - "Structure Browser" . + + "main version"; + "http://purl.obolibrary.org/obo/ceph.owl" . - - "GNOme Glycan Composition Browser" ; - "Composition Browser" . + + "CHEBI"; + "active"; + "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds."; + "Chemical Entities of Biological Interest"; + ; + ; + ; + "chemistry and biochemistry"; + "https://github.com/ebi-chebi/ChEBI/issues"; + ; + "http://purl.obolibrary.org/obo/chebi.owl"; + _:b57; + ; + ; + ; + ; + ; + ; + ; + ; + . -_:b90 "Nathan Edwards" ; - "nje5@georgetown.edu" . + + "http://purl.obolibrary.org/obo/chebi.json" . - - "Glycan Naming and Subsumption Ontology, OWL format (primary)" ; - "http://purl.obolibrary.org/obo/gno.owl" . + + "http://purl.obolibrary.org/obo/chebi.obo" . - - "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)" ; - "http://purl.obolibrary.org/obo/gno.obo" . + + "http://purl.obolibrary.org/obo/chebi.owl" . - - "Glycan Naming and Subsumption Ontology, JSON format (automated conversion from OWL)" ; - "http://purl.obolibrary.org/obo/gno.json" . + + "chebi, compressed owl"; + "http://purl.obolibrary.org/obo/chebi.owl.gz" . - - "Bridging axioms between nifstd and go" ; - "GO bridge to NIFSTD" ; - ; - . + + "chebi_core, no xrefs"; + "http://purl.obolibrary.org/obo/chebi/chebi_core.obo" . - - "The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments." . + + "chebi_lite, no syns or xrefs"; + "http://purl.obolibrary.org/obo/chebi/chebi_lite.obo" . - - "All life" . + + "CHEMINF"; + "active"; + "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them."; + "Chemical Information Ontology"; + ; + ; + "chemistry and biochemistry"; + "https://github.com/semanticchemistry/semanticchemistry/issues"; + "https://groups.google.com/forum/#!forum/cheminf-ontology"; + "http://purl.obolibrary.org/obo/cheminf.owl"; + _:b68; + ; + . - - "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium" . + + "http://purl.obolibrary.org/obo/cheminf.owl" . - - "The Gene Ontology resource: enriching a GOld mine" . + + "CHIRO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes."; + "CHEBI Integrated Role Ontology"; + ; + ; + "chemistry and biochemistry"; + "https://github.com/obophenotype/chiro/issues"; + "http://purl.obolibrary.org/obo/chiro.owl"; + _:b79; + ; + ; + . - - "Gene Ontology AmiGO 2 Browser" ; - "AmiGO" . + + "http://purl.obolibrary.org/obo/chiro.obo" . -_:b6 "Suzi Aleksander" ; - "suzia@stanford.edu" . + + "http://purl.obolibrary.org/obo/chiro.owl" . - - "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies" ; - "GO (OWL edition)" ; - "http://purl.obolibrary.org/obo/go.owl" ; - . + + "CHMO"; + "active"; + "CHMO, the chemical methods ontology, describes methods used to"; + "Chemical Methods Ontology"; + ; + "health"; + "https://github.com/rsc-ontologies/rsc-cmo/issues"; + "chemistry-ontologies@googlegroups.com"; + "http://purl.obolibrary.org/obo/chmo.owl"; + _:b90; + ; + . - - "Equivalent to go.owl, in obo format" ; - "GO (OBO Format edition)" ; - "http://purl.obolibrary.org/obo/go.obo" ; - . + + "http://purl.obolibrary.org/obo/chmo.owl" . - - "Equivalent to go.owl, in obograph json format" ; - "GO (JSON edition)" ; - "http://purl.obolibrary.org/obo/go.json" ; - . + + "CIDO"; + "active"; + "The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infectious diseases, including their etiology, transmission, epidemiology, pathogenesis, diagnosis, prevention, and treatment."; + "Coronavirus Infectious Disease Ontology"; + ; + ; + "health"; + "https://github.com/cido-ontology/cido/issues"; + "cido-discuss@googlegroups.com"; + "http://purl.obolibrary.org/obo/cido.owl"; + _:b101; + ; + . - - "The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies" ; - "GO-Plus" ; - "http://purl.obolibrary.org/obo/go/extensions/go-plus.owl" ; - . + + "http://purl.obolibrary.org/obo/cido.owl" . - - "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" ; - "GO Base Module" ; - "http://purl.obolibrary.org/obo/go/go-base.owl" ; - . + + "CIO"; + "active"; + "An ontology to capture confidence information about annotations."; + "Confidence Information Ontology"; + ; + ; + "information"; + "https://github.com/BgeeDB/confidence-information-ontology"; + "http://purl.obolibrary.org/obo/cio.owl"; + _:b113; + ; + ; + . - - "As go-plus.owl, in obographs json format" ; - "GO-Plus" ; - "http://purl.obolibrary.org/obo/go/extensions/go-plus.json" ; - . + + "http://purl.obolibrary.org/obo/cio.obo" . - - "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies." ; - "GO-Basic, Filtered, for use with legacy tools" ; - "http://purl.obolibrary.org/obo/go/go-basic.obo" ; - . + + "http://purl.obolibrary.org/obo/cio.owl" . - - "As go-basic.obo, in json format" ; - "GO-Basic, Filtered, for use with legacy tools (JSON)" ; - "http://purl.obolibrary.org/obo/go/go-basic.json" ; - . + + ; + "CL"; + "active"; + ; + ; + ; + ; + ; + ; + ; + "The Cell Ontology is a structured controlled vocabulary for cell types in animals."; + "Cell Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/cell-ontology/issues"; + "https://groups.google.com/g/cl_edit"; + "http://purl.obolibrary.org/obo/cl.owl"; + _:b124; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + . - - "Classes added to ncbitaxon for groupings such as prokaryotes" ; - "GO Taxon Groupings" ; - "http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl" ; - . + + "Complete ontology, plus inter-ontology axioms, and imports modules merged in"; + "CL OBOGraph-JSON format edition"; + "json"; + "http://purl.obolibrary.org/obo/cl.json" . - - "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." ; - "GO (OWL edition), daily snapshot release" ; - "http://purl.obolibrary.org/obo/go/snapshot/go.owl" ; - . + + "Complete ontology, plus inter-ontology axioms, and imports modules merged in"; + "CL obo format edition"; + "obo"; + "http://purl.obolibrary.org/obo/cl.obo" . - - "Equivalent to go.owl, but released daily. Note the snapshot release is not archived." ; - "GO (OBO Format edition), daily snapshot release" ; - "http://purl.obolibrary.org/obo/go/snapshot/go.obo" ; - . + + "Complete ontology, plus inter-ontology axioms, and imports modules"; + "Main CL OWL edition"; + "owl-rdf/xml"; + "http://purl.obolibrary.org/obo/cl.owl" . - - "HANCESTRO" ; - "active" ; - "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies." ; - "Human Ancestry Ontology" ; - ; - ; - "organisms" ; - "https://github.com/EBISPOT/hancestro/issues" ; - "http://purl.obolibrary.org/obo/hancestro.owl" ; - _:b91 ; - ; - ; - . + + "complete CL but with no imports or external axioms"; + "CL base module (OBOGraph-JSON version)"; + "json"; + "http://purl.obolibrary.org/obo/cl/cl-base.json" . - - "A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog" . + + "complete CL but with no imports or external axioms"; + "CL base module (OBO version)"; + "obo"; + "http://purl.obolibrary.org/obo/cl/cl-base.obo" . -_:b91 "Danielle Welter" ; - "dwelter.ontologist@gmail.com" . + + "complete CL but with no imports or external axioms"; + "CL base module"; + "owl-rdf/xml"; + "http://purl.obolibrary.org/obo/cl/cl-base.owl" . - - "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies" ; - "HANCESTRO" ; - "http://purl.obolibrary.org/obo/hancestro.owl" . + + "Basic version, no inter-ontology axioms"; + "Basic CL (OBOGraph-JSON version)"; + "json"; + "http://purl.obolibrary.org/obo/cl/cl-basic.json" . - - "Base version of HANCESTRO" ; - "HANCESTRO Base" ; - "http://purl.obolibrary.org/obo/hancestro-base.owl" . + + "Basic version, no inter-ontology axioms"; + "Basic CL (OBO version)"; + "obo"; + "http://purl.obolibrary.org/obo/cl/cl-basic.obo" . - - "HAO" ; - "active" ; - ; - "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)" ; - "Hymenoptera Anatomy Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/hymao/hao/issues" ; - "http://purl.obolibrary.org/obo/hao.owl" ; - _:b92 ; - ; - ; - ; - . + + "Basic version, no inter-ontology axioms"; + "Basic CL"; + "owl-rdf/xml"; + "http://purl.obolibrary.org/obo/cl/cl-basic.owl" . - - "Hymenoptera" . + + "CLAO"; + "active"; + ; + "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)."; + "Collembola Anatomy Ontology"; + ; + "anatomy and development"; + "https://github.com/luis-gonzalez-m/Collembola/issues"; + "http://purl.obolibrary.org/obo/clao.owl"; + _:b135; + ; + ; + . - - "A gross anatomy ontology for hymenoptera" . + + "http://purl.obolibrary.org/obo/clao.obo" . -_:b92 "Matt Yoder" ; - "diapriid@gmail.com" . + + "http://purl.obolibrary.org/obo/clao.owl" . - - "http://purl.obolibrary.org/obo/hao.owl" . + + "CLO"; + "active"; + ; + ; + ; + ; + "An ontology to standardize and integrate cell line information and to support computer-assisted reasoning."; + "Cell Line Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/CLO-Ontology/CLO/issues"; + "http://purl.obolibrary.org/obo/clo.owl"; + _:b146; + ; + . - - "http://purl.obolibrary.org/obo/hao.obo" . + + "http://purl.obolibrary.org/obo/clo.owl" . - - "http://purl.obolibrary.org/obo/hao/depictions.owl" . + + "CLYH"; + "active"; + ; + ; + ; + "The Clytia hemisphaerica Development and Anatomy Ontology (CLYH) describes the anatomical and developmental features of the Clytia hemisphaerica life cycle."; + "Clytia hemisphaerica Development and Anatomy Ontology"; + ; + "anatomy and development"; + "https://github.com/EBISPOT/clyh_ontology/issues"; + "http://purl.obolibrary.org/obo/clyh.owl"; + _:b157; + ; + ; + . - - "HOM" ; - "active" ; - "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology." ; - "Homology Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/BgeeDB/homology-ontology/issues" ; - "http://purl.obolibrary.org/obo/hom.owl" ; - _:b93 ; - ; - . + + "http://purl.obolibrary.org/obo/clyh.obo" . - - "An ontology to clarify homology-related concepts" . + + "http://purl.obolibrary.org/obo/clyh.owl" . -_:b93 "Frederic Bastian" ; - "bgee@sib.swiss" . + + "inactive"; + "CranioMaxilloFacial ontology"; + "health"; + _:b131; + . - - "http://purl.obolibrary.org/obo/hom.owl" . + + "CMO"; + "active"; + "Morphological and physiological measurement records generated from clinical and model organism research and health programs."; + "Clinical measurement ontology"; + ; + ; + ; + "health"; + "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues"; + ; + "http://purl.obolibrary.org/obo/cmo.owl"; + _:b168; + ; + ; + ; + . - - "HsapDv" ; - "active" ; - "Life cycle stages for Human" ; - "Human Developmental Stages" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; - "http://purl.obolibrary.org/obo/hsapdv.owl" ; - _:b94 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/cmo.obo" . -_:b94 "Frédéric Bastian" ; - "frederic.bastian@unil.ch" . + + "http://purl.obolibrary.org/obo/cmo.owl" . - - "http://purl.obolibrary.org/obo/hsapdv.owl" . + + "COB"; + "active"; + "COB brings together key terms from a wide range of OBO projects to improve interoperability."; + "Core Ontology for Biology and Biomedicine"; + ; + "upper"; + "https://github.com/OBOFoundry/COB/issues"; + "http://purl.obolibrary.org/obo/cob.owl"; + _:b179; + ; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/hsapdv.obo" . + + "Core Ontology for Biology and Biomedicine, main ontology"; + "COB"; + "http://purl.obolibrary.org/obo/cob.owl" . - - "HSO" ; - "active" ; - ; - ; - ; - ; - ; - "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance." ; - "Health Surveillance Ontology" ; - ; - "health" ; - "https://github.com/SVA-SE/HSO/issues/" ; - "http://purl.obolibrary.org/obo/hso.owl" ; - _:b95 ; - ; - ; - . + + "base module for COB"; + "COB base module"; + "http://purl.obolibrary.org/obo/cob/cob-base.owl" . -_:b95 "Fernanda Dorea" ; - "fernanda.dorea@sva.se" . + + "COB with native IDs preserved rather than rewired to OBO IDs"; + "COB native module"; + "http://purl.obolibrary.org/obo/cob/cob-native.owl" . - - "http://purl.obolibrary.org/obo/hso.owl" ; - . + + "COB to external"; + a ; + "http://purl.obolibrary.org/obo/cob/cob-to-external.owl" . - - "HTN" ; - "active" ; - "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines" ; - "Hypertension Ontology" ; - ; - "health" ; - "https://github.com/aellenhicks/htn_owl/issues" ; - "http://purl.obolibrary.org/obo/htn.owl" ; - _:b96 ; - ; - . + + "demo of COB including subsets of other ontologies (Experimental, for demo purposes only)"; + "COB demo ontology (experimental)"; + "http://purl.obolibrary.org/obo/cob/products/demo-cob.owl" . -_:b96 "Amanda Hicks" ; - "aellenhicks@gmail.com" . + + "COLAO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research. It has been built using the Ontology Develoment Kit, with the Ontology for the Anatomy of the Insect Skeleto-Muscular system (AISM) as a backbone."; + "Coleoptera Anatomy Ontology (COLAO)"; + ; + "anatomy and development"; + "https://github.com/insect-morphology/colao/issues"; + "http://purl.obolibrary.org/obo/colao.owl"; + _:b180; + ; + ; + . - - "HTN" ; - "http://purl.obolibrary.org/obo/htn.owl" . + + "http://purl.obolibrary.org/obo/colao.obo" . -_:b7 "Jie Zheng" ; - "zhengj2007@gmail.com" . + + "http://purl.obolibrary.org/obo/colao.owl" . - - "http://purl.obolibrary.org/obo/iao.owl" . - - - "IAO ontology metadata" ; - "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl" ; - . + + "CRO"; + "active"; + "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability."; + "Contributor Role Ontology"; + ; + "information"; + "https://github.com/data2health/contributor-role-ontology/issues"; + "http://purl.obolibrary.org/obo/cro.owl"; + _:b181; + ; + . - - "IAO dev" ; - "http://purl.obolibrary.org/obo/iao/dev/iao.owl" . + + "CRO"; + "http://purl.obolibrary.org/obo/cro.owl" . - - "An ontology based on a theory of document acts describing what people can do with documents" ; - "ontology of document acts" ; - "http://purl.obolibrary.org/obo/iao/d-acts.owl" ; - _:b97 . + + ; + "CTENO"; + "active"; + ; + ; + "An anatomical and developmental ontology for ctenophores (Comb Jellies)"; + "Ctenophore Ontology"; + ; + "anatomy and development"; + "https://github.com/obophenotype/ctenophore-ontology/issues"; + "http://purl.obolibrary.org/obo/cteno.owl"; + _:b182; + ; + . -_:b97 "Mathias Brochhausen" ; - "mbrochhausen@gmail.com" . + + "http://purl.obolibrary.org/obo/cteno.owl" . - - "ICEO" ; - "active" ; - "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs)." ; - "Integrative and Conjugative Element Ontology" ; - ; - ; - "microbiology" ; - "https://github.com/ontoice/ICEO/issues" ; - "http://purl.obolibrary.org/obo/iceo.owl" ; - _:b98 ; - ; - . + + "CTO"; + "active"; + "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials."; + "CTO: Core Ontology of Clinical Trials"; + ; + "health"; + "https://github.com/ClinicalTrialOntology/CTO/issues"; + "http://purl.obolibrary.org/obo/cto.owl"; + _:b184; + ; + . - - "ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements" . + + "http://purl.obolibrary.org/obo/cto.owl" . -_:b98 "Meng LIU" ; - "liumeng94@sjtu.edu.cn" . + + "CVDO"; + "active"; + "An ontology to describe entities related to cardiovascular diseases"; + "Cardiovascular Disease Ontology"; + ; + "health"; + "https://github.com/OpenLHS/CVDO/issues"; + "http://purl.obolibrary.org/obo/cvdo.owl"; + _:b185; + ; + . - - "http://purl.obolibrary.org/obo/iceo.owl" . + + "http://purl.obolibrary.org/obo/cvdo.owl" . - - "ICO" ; - "active" ; - "An ontology of clinical informed consents" ; - "Informed Consent Ontology" ; - ; - "investigations" ; - "https://github.com/ICO-ontology/ICO/issues" ; - "http://purl.obolibrary.org/obo/ico.owl" ; - _:b99 ; - ; - . + + ; + "inactive"; + "Dendritic cell"; + "anatomy and development"; + _:b132; + . -_:b99 "Yongqun Oliver He" ; - "yongqunh@med.umich.edu" . + + ; + "DDANAT"; + "active"; + "A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum"; + "Dictyostelium discoideum anatomy"; + ; + ; + "anatomy and development"; + "https://github.com/dictyBase/migration-data/issues"; + "http://purl.obolibrary.org/obo/ddanat.owl"; + _:b186; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/ico.owl" . + + "http://purl.obolibrary.org/obo/ddanat.obo" . - - "IDO" ; - "active" ; - ; - "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain." ; - "Infectious Disease Ontology" ; - ; - ; - "health" ; - "https://github.com/infectious-disease-ontology/infectious-disease-ontology/issues" ; - "http://purl.obolibrary.org/obo/ido.owl" ; - _:b100 ; - ; - . + + "http://purl.obolibrary.org/obo/ddanat.owl" . - - "The Infectious Disease Ontology in the age of COVID-19" . + + ; + "DDPHENO"; + "active"; + "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum."; + "Dictyostelium discoideum phenotype ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/dicty-phenotype-ontology/issues"; + "http://purl.obolibrary.org/obo/ddpheno.owl"; + _:b187; + ; + ; + ; + . -_:b100 "Lindsay Cowell" ; - "Lindsay.Cowell@utsouthwestern.edu" . + + "http://purl.obolibrary.org/obo/ddpheno.obo" . - - "http://purl.obolibrary.org/obo/ido.owl" . + + "http://purl.obolibrary.org/obo/ddpheno.owl" . - - "INO" ; - "active" ; - "An ontology of interactions and interaction networks" ; - "Interaction Network Ontology" ; - ; - ; - "biological systems" ; - "https://github.com/INO-ontology/ino/issues" ; - "http://purl.obolibrary.org/obo/ino.owl" ; - _:b101 ; - ; - . + + "DIDEO"; + "active"; + "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology"; + "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/DIDEO/DIDEO/issues"; + "http://purl.obolibrary.org/obo/dideo.owl"; + _:b188; + ; + . - - "Development and application of an Interaction Network Ontology for literature mining of vaccine-associated gene-gene interactions" . + + "http://purl.obolibrary.org/obo/dideo.owl" . -_:b101 "Yongqun Oliver He" ; - "yongqunh@med.umich.edu" . + + "inactive"; + "A formal represention for drug-drug interactions knowledge."; + "The Drug-Drug Interactions Ontology"; + ; + ; + "health"; + "https://github.com/labda/DINTO/issues"; + _:b133; + ; + . - - "http://purl.obolibrary.org/obo/ino.owl" . + + "http://purl.obolibrary.org/obo/dinto.owl" . - - "LABO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents." ; - "clinical LABoratory Ontology" ; - ; - ; - "information" ; - "https://github.com/OpenLHS/LABO/issues" ; - "http://purl.obolibrary.org/obo/labo.owl" ; - _:b102 ; - ; - . + + ; + "DISDRIV"; + "active"; + "Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI."; + "Disease Drivers Ontology"; + ; + "health"; + "https://github.com/DiseaseOntology/DiseaseDriversOntology/issues"; + ; + "http://purl.obolibrary.org/obo/disdriv.owl"; + _:b189; + ; + ; + . - - "OGMS" ; - "active" ; - ; - "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities" ; - "Ontology for General Medical Science" ; - ; - ; - ; - "health" ; - "https://github.com/OGMS/ogms/issues" ; - "http://purl.obolibrary.org/obo/ogms.owl" ; - _:b103 ; - ; - . + + "http://purl.obolibrary.org/obo/disdriv.owl" . - - "inactive" ; - "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)" ; - "Ontologized MIABIS" ; - ; - "health" ; - "https://github.com/OMIABIS/omiabis-dev/issues" ; - _:b104 ; - ; - . + + ; + "DOID"; + "active"; + "An ontology for describing the classification of human diseases organized by etiology."; + "Human Disease Ontology"; + ; + ; + ; + "health"; + "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues"; + ; + "http://purl.obolibrary.org/obo/doid.owl"; + _:b190; + ; + ; + ; + . - - "OMRSE" ; - "active" ; - ; - "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations." ; - "Ontology for Modeling and Representation of Social Entities" ; - ; - ; - "health" ; - "https://github.com/mcwdsi/OMRSE/issues" ; - "http://purl.obolibrary.org/obo/omrse.owl" ; - _:b105 ; - ; - . + + "Disease Ontology, OBO format. This file omits the equivalent axioms."; + "http://purl.obolibrary.org/obo/doid.obo" . - - "OPMI" ; - "active" ; - "The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relations associated with precision medicine and related investigations at different conditions." ; - "Ontology of Precision Medicine and Investigation" ; - ; - "investigations" ; - "https://github.com/OPMI/opmi/issues" ; - "http://groups.google.com/group/opmi-discuss" ; - "http://purl.obolibrary.org/obo/opmi.owl" ; - _:b106 ; - ; - . + + "Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy plus equivalent axioms to other OBO Foundry ontologies."; + "http://purl.obolibrary.org/obo/doid.owl" . - - "LABO: An Ontology for Laboratory Test Prescription and Reporting" . + + ; + "FBcv"; + "active"; + "An ontology of commonly encountered and/or high level Drosophila phenotypes."; + "Drosophila Phenotype Ontology"; + ; + ; + "phenotype"; + "https://github.com/FlyBase/drosophila-phenotype-ontology/issues"; + ; + "http://purl.obolibrary.org/obo/dpo.owl"; + _:b191; + ; + ; + ; + . -_:b102 "Paul Fabry" ; - "paul.fabry@usherbrooke.ca" . + + "http://purl.obolibrary.org/obo/dpo.json" . - - "http://purl.obolibrary.org/obo/labo.owl" . + + "http://purl.obolibrary.org/obo/dpo.obo" . - - "LEPAO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research)." ; - "Lepidoptera Anatomy Ontology" ; - ; - "anatomy and development" ; - "https://github.com/insect-morphology/lepao/issues" ; - "http://purl.obolibrary.org/obo/lepao.owl" ; - _:b107 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/dpo.owl" . -_:b107 "Luis A. Gonzalez-Montana" ; - "lagonzalezmo@unal.edu.co" . + + "DRON"; + "active"; + "An ontology to support comparative effectiveness researchers studying claims data."; + "The Drug Ontology"; + ; + ; + "health"; + "https://github.com/ufbmi/dron/issues"; + "http://purl.obolibrary.org/obo/dron.owl"; + _:b192; + ; + . - - "http://purl.obolibrary.org/obo/lepao.owl" . + + "http://purl.obolibrary.org/obo/dron.owl" . - - "http://purl.obolibrary.org/obo/lepao.obo" . + + "DUO"; + "active"; + ; + ; + "DUO is an ontology which represent data use conditions."; + "Data Use Ontology"; + ; + "information"; + "https://github.com/EBISPOT/DUO/issues"; + "http://purl.obolibrary.org/obo/duo.owl"; + _:b193; + ; + . - - "MA" ; - "active" ; - ; - "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)." ; - "Mouse adult gross anatomy" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/adult-mouse-anatomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/ma.owl" ; - _:b108 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/duo.owl" . -_:b108 "Terry Hayamizu" ; - "Terry.Hayamizu@jax.org" . + + "ECAO"; + "active"; + ; + ; + ; + "An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586)."; + "The Echinoderm Anatomy and Development Ontology"; + ; + "anatomy and development"; + "https://github.com/echinoderm-ontology/ecao_ontology/issues"; + "http://purl.obolibrary.org/obo/ecao.owl"; + _:b195; + ; + ; + . - - "http://purl.obolibrary.org/obo/ma.owl" . + + "http://purl.obolibrary.org/obo/ecao.obo" . - - "http://purl.obolibrary.org/obo/ma.obo" . + + "http://purl.obolibrary.org/obo/ecao.owl" . -_:b66 "Leigh Carmody" ; - "Leigh.Carmody@jax.org" . + + "ECO"; + "active"; + "An ontology for experimental and other evidence statements."; + "Evidence and Conclusion Ontology"; + ; + ; + ; + ; + "investigations"; + ; + "https://github.com/evidenceontology/evidenceontology/issues"; + ; + "http://purl.obolibrary.org/obo/eco.owl"; + _:b196; + ; + ; + . - - "http://purl.obolibrary.org/obo/maxo.owl" . + + "http://purl.obolibrary.org/obo/eco.obo" . - - "http://purl.obolibrary.org/obo/maxo.obo" . + + "http://purl.obolibrary.org/obo/eco.owl" . - - "http://purl.obolibrary.org/obo/maxo.json" . + + "ECOCORE"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms."; + "An ontology of core ecological entities"; + ; + "environment"; + "https://github.com/EcologicalSemantics/ecocore/issues"; + "http://purl.obolibrary.org/obo/ecocore.owl"; + _:b197; + ; + ; + . - - "http://purl.obolibrary.org/obo/maxo/maxo-base.owl" . + + "http://purl.obolibrary.org/obo/ecocore.obo" . - - "http://purl.obolibrary.org/obo/maxo/maxo-base.obo" . + + "http://purl.obolibrary.org/obo/ecocore.owl" . - - "http://purl.obolibrary.org/obo/maxo/maxo-base.json" . + + "ECTO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)."; + "Environmental conditions, treatments and exposures ontology"; + ; + "environment"; + "https://github.com/EnvironmentOntology/environmental-exposure-ontology/issues"; + "http://purl.obolibrary.org/obo/ecto.owl"; + _:b198; + ; + ; + ; + ; + ; + ; + . - - "MCO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "Microbial Conditions Ontology is an ontology..." ; - "Microbial Conditions Ontology" ; - ; - "investigations" ; - "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology/issues" ; - "http://purl.obolibrary.org/obo/mco.owl" ; - _:b109 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/ecto.json" . - - "MICRO" ; - "inactive" ; - "An ontology of prokaryotic phenotypic and metabolic characters" ; - "Ontology of Prokaryotic Phenotypic and Metabolic Characters" ; - ; - "phenotype" ; - "https://github.com/carrineblank/MicrO/issues" ; - "http://purl.obolibrary.org/obo/micro.owl" ; - _:b110 ; - ; - . + + "http://purl.obolibrary.org/obo/ecto.obo" . - - "OMIT" ; - "active" ; - "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain" ; - "Ontology for MIRNA Target" ; - ; - "chemistry and biochemistry" ; - "https://github.com/OmniSearch/omit/issues" ; - "http://purl.obolibrary.org/obo/omit.owl" ; - _:b111 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/ecto.owl" . - - "OMP" ; - "active" ; - "An ontology of phenotypes covering microbes" ; - "Ontology of Microbial Phenotypes" ; - ; - ; - "phenotype" ; - "https://github.com/microbialphenotypes/OMP-ontology/issues" ; - "http://purl.obolibrary.org/obo/omp.owl" ; - _:b112 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/ecto/ecto-base.json" . - - "ZECO" ; - "active" ; - ; - "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN" ; - "Zebrafish Experimental Conditions Ontology" ; - ; - "environment" ; - "https://github.com/ybradford/zebrafish-experimental-conditions-ontology/issues" ; - "http://purl.obolibrary.org/obo/zeco.owl" ; - _:b113 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/ecto/ecto-base.obo" . -_:b109 "Citlalli Mejía-Almonte" ; - "citlalli.mejiaalmonte@gmail.com" . + + "http://purl.obolibrary.org/obo/ecto/ecto-base.owl" . - - "http://purl.obolibrary.org/obo/mco.owl" . + + ; + "inactive"; + "Human developmental anatomy, timed version"; + "anatomy and development"; + _:b134; + . - - "http://purl.obolibrary.org/obo/mco.obo" . + + ; + "inactive"; + "Human developmental anatomy, abstract version"; + "anatomy and development"; + _:b136 . - - "MCRO" ; - "active" ; - ; - ; - "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers." ; - "Model Card Report Ontology" ; - ; - ; - "information technology" ; - "https://github.com/UTHealth-Ontology/MCRO/issues" ; - "http://purl.obolibrary.org/obo/mcro.owl" ; - _:b114 ; - ; - . + + ; + "inactive"; + ; + ; + ; + "A structured controlled vocabulary of stage-specific anatomical structures of the developing human."; + "Human developmental anatomy, abstract"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"; + "http://purl.obolibrary.org/obo/ehdaa2.owl"; + _:b114; + ; + ; + . - - "SWO" ; - "active" ; - "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community." ; - "Software ontology" ; - ; - ; - "information technology" ; - "https://github.com/allysonlister/swo/issues" ; - "http://purl.obolibrary.org/obo/swo.owl" ; - _:b115 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/ehdaa2.obo" . - - "Toward a standard formal semantic representation of the model card report" . + + "http://purl.obolibrary.org/obo/ehdaa2.owl" . -_:b114 "Tuan Amith" ; - "muamith@utmb.edu" . + + ; + "inactive"; + "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)."; + "Mouse gross anatomy and development, timed"; + "anatomy and development"; + _:b137; + ; + ; + . - - "http://purl.obolibrary.org/obo/mcro.owl" . + + "http://purl.obolibrary.org/obo/emap.owl" . - - "MF" ; - "active" ; - "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning." ; - "Mental Functioning Ontology" ; - ; - "health" ; - "https://github.com/jannahastings/mental-functioning-ontology/issues" ; - "http://purl.obolibrary.org/obo/mf.owl" ; - _:b116 ; - ; - . + + ; + "EMAPA"; + "active"; + "An ontology for mouse anatomy covering embryonic development and postnatal stages."; + "Mouse Developmental Anatomy Ontology"; + ; + ; + ; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/developmental-mouse-anatomy-ontology/issues"; + "http://purl.obolibrary.org/obo/emapa.owl"; + _:b199; + ; + ; + . -_:b116 "Janna Hastings" ; - "janna.hastings@gmail.com" . + + "http://purl.obolibrary.org/obo/emapa.obo" . - - "http://purl.obolibrary.org/obo/mf.owl" . + + "http://purl.obolibrary.org/obo/emapa.owl" . - - "MFOEM" ; - "active" ; - "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings." ; - "Emotion Ontology" ; - ; - "health" ; - "https://github.com/jannahastings/emotion-ontology/issues" ; - "http://purl.obolibrary.org/obo/mfoem.owl" ; - _:b117 ; - ; - . + + "ENVO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + "An ontology of environmental systems, components, and processes."; + "Environment Ontology"; + ; + ; + ; + "environment"; + "https://github.com/EnvironmentOntology/envo/issues/"; + "http://purl.obolibrary.org/obo/envo.owl"; + _:b200; + ; + ; + ; + ; + ; + ; + ; + . -_:b117 "Janna Hastings" ; - "janna.hastings@gmail.com" . + + "ENVO in obographs JSON format"; + "http://purl.obolibrary.org/obo/envo.json" . - - "http://purl.obolibrary.org/obo/mfoem.owl" . + + "ENVO in OBO Format. May be lossy"; + "http://purl.obolibrary.org/obo/envo.obo" . - - "MFOMD" ; - "active" ; - "An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable" ; - "Mental Disease Ontology" ; - ; - "health" ; - "https://github.com/jannahastings/mental-functioning-ontology/issues" ; - "http://purl.obolibrary.org/obo/mfomd.owl" ; - _:b118 ; - ; - . + + "main ENVO OWL release"; + "http://purl.obolibrary.org/obo/envo.owl" . -_:b118 "Janna Hastings" ; - "janna.hastings@gmail.com" . + + "GSC Lite subset of ENVO"; + "http://purl.obolibrary.org/obo/envo/subsets/EnvO-Lite-GSC.obo"; + . - - "http://purl.obolibrary.org/obo/mfomd.owl" . + + "OBO-Basic edition of ENVO"; + "http://purl.obolibrary.org/obo/envo/subsets/envo-basic.obo" . - - "MI" ; - "active" ; - "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions." ; - "Molecular Interactions Controlled Vocabulary" ; - ; - "investigations" ; - "https://github.com/HUPO-PSI/psi-mi-CV/issues" ; - "http://purl.obolibrary.org/obo/mi.owl" ; - _:b119 ; - ; - ; - ; - . + + "Earth Microbiome Project subset"; + "http://purl.obolibrary.org/obo/envo/subsets/envoEmpo.owl" . -_:b119 "Luana Licata" ; - "luana.licata@gmail.com" . + + "inactive"; + "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments."; + "Plant Environment Ontology"; + ; + ; + "environment"; + "https://github.com/Planteome/plant-environment-ontology/issues"; + _:b138; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/mi.owl" . + + "http://purl.obolibrary.org/obo/eo.obo" . - - "http://purl.obolibrary.org/obo/mi.obo" . + + "http://purl.obolibrary.org/obo/eo.owl" . - - "MIAPA" ; - "active" ; - "An application ontology to formalize annotation of phylogenetic data." ; - "MIAPA Ontology" ; - ; - ; - "information" ; - "https://github.com/evoinfo/miapa/issues" ; - "http://groups.google.com/group/miapa-discuss" ; - "http://purl.obolibrary.org/obo/miapa.owl" ; - _:b120 ; - ; - . - - - "Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)" . + + "EPIO"; + "active"; + ; + "A application driven Epilepsy Ontology with official terms from the ILAE."; + "Epilepsy Ontology"; + ; + "health"; + "https://github.com/SCAI-BIO/EpilepsyOntology/issues"; + "http://purl.obolibrary.org/obo/epio.owl"; + _:b201; + ; + ; + . -_:b120 "Hilmar Lapp" ; - "hilmar.lapp@duke.edu" . + + "http://purl.obolibrary.org/obo/epio.owl" . - - "http://purl.obolibrary.org/obo/miapa.owl" . + + "inactive"; + "An ontology designed to support the semantic annotation of epidemiology resources"; + "Epidemiology Ontology"; + "health"; + ; + . - - "MMO" ; - "active" ; - "A representation of the variety of methods used to make clinical and phenotype measurements. " ; - "Measurement method ontology" ; - ; - ; - ; - "health" ; - "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/mmo.owl" ; - _:b121 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/epo.owl" . - - "RGD Ontology Browser" ; - "RGD" . + + "inactive"; + "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens."; + "eagle-i resource ontology"; + ; + "information"; + _:b139; + ; + . -_:b121 "Jennifer Smith" ; - "jrsmith@mcw.edu" . + + "http://purl.obolibrary.org/obo/ero.owl" . - - "http://purl.obolibrary.org/obo/mmo.owl" . + + "EUPATH"; + "inactive"; + "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org)."; + "VEuPathDB ontology"; + ; + ; + "organisms"; + "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues"; + "http://purl.obolibrary.org/obo/eupath.owl"; + _:b104; + ; + . - - "http://purl.obolibrary.org/obo/mmo.obo" . + + "http://purl.obolibrary.org/obo/eupath.owl" . - - "MmusDv" ; - "active" ; - "Life cycle stages for Mus Musculus" ; - "Mouse Developmental Stages" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; - "http://purl.obolibrary.org/obo/mmusdv.owl" ; - _:b122 ; - ; - ; - ; - . + + "inactive"; + "eVOC (Expressed Sequence Annotation for Humans)"; + "anatomy and development"; + _:b140 . -_:b122 "Frédéric Bastian" ; - "frederic.bastian@unil.ch" . + + "EXMO"; + "active"; + "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise."; + "Exercise Medicine Ontology"; + ; + ; + "health"; + "https://github.com/Exercise-Medicine-Ontology/EXMO/issues"; + "http://purl.obolibrary.org/obo/exmo.owl"; + _:b202; + ; + . - - "http://purl.obolibrary.org/obo/mmusdv.owl" . + + "http://purl.obolibrary.org/obo/exmo.owl" . - - "http://purl.obolibrary.org/obo/mmusdv.obo" . + + "ExO"; + "active"; + "Vocabularies for describing exposure data to inform understanding of environmental health."; + "Exposure ontology"; + ; + "health"; + "https://github.com/CTDbase/exposure-ontology/issues"; + "http://purl.obolibrary.org/obo/exo.owl"; + _:b203; + ; + ; + . - - "MOD" ; - "active" ; - "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications" ; - "Protein modification" ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/HUPO-PSI/psi-mod-CV/issues" ; - "http://purl.obolibrary.org/obo/mod.owl" ; - _:b123 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/exo.obo" . - - "The PSI-MOD community standard for representation of protein modification data" . + + "http://purl.obolibrary.org/obo/exo.owl" . -_:b123 "Pierre-Alain Binz" ; - "pierre-alain.binz@chuv.ch" . + + ; + "FAO"; + "active"; + "A structured controlled vocabulary for the anatomy of fungi."; + "Fungal gross anatomy"; + ; + "anatomy and development"; + "https://github.com/obophenotype/fungal-anatomy-ontology/issues"; + "http://purl.obolibrary.org/obo/fao.owl"; + _:b204; + ; + ; + . - - "PSI-MOD Ontology, OWL format" ; - "PSI-MOD.owl" ; - "http://purl.obolibrary.org/obo/mod.owl" . + + "http://purl.obolibrary.org/obo/fao.obo" . - - "PSI-MOD Ontology, OBO format" ; - "PSI-MOD.obo" ; - "http://purl.obolibrary.org/obo/mod.obo" . + + "http://purl.obolibrary.org/obo/fao.owl" . - - "MONDO" ; - "active" ; - ; - "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology." ; - "Mondo Disease Ontology" ; - ; - ; - ; - "health" ; - "https://github.com/monarch-initiative/mondo/issues" ; - "https://groups.google.com/group/mondo-users" ; - ; - "http://purl.obolibrary.org/obo/mondo.owl" ; - _:b124 ; - ; - ; - ; - ; - ; - . + + "FBbi"; + "active"; + ; + ; + ; + "An ontology for the description of sample preparation, visualization, and imaging methods used in biomedical research."; + "Biological Imaging Methods Ontology"; + ; + "investigations"; + "https://github.com/foundingGIDE/fbbi/issues"; + ; + "http://purl.obolibrary.org/obo/fbbi.owl"; + _:b206; + ; + ; + ; + ; + . - - "Mondo: Integrating Disease Terminology Across Communities" . + + "http://purl.obolibrary.org/obo/fbbi.obo" . - - "Mondo: Unifying diseases for the world, by the world" . + + "http://purl.obolibrary.org/obo/fbbi.owl" . - - "Monarch Initiative Disease Browser" ; - "Monarch" . + + "http://purl.obolibrary.org/obo/fbbi/fbbi-base.obo" . -_:b124 "Sabrina Toro" ; - "Sabrina@tislab.org" . + + "http://purl.obolibrary.org/obo/fbbi/fbbi-base.owl" . - - "Complete ontology with merged imports." ; - "Mondo OWL edition" ; - "owl-rdf/xml" ; - "http://purl.obolibrary.org/obo/mondo.owl" . + + ; + "FBbt"; + "active"; + "An ontology representing the gross anatomy of Drosophila melanogaster."; + "Drosophila gross anatomy"; + ; + ; + ; + ; + ; + "anatomy and development"; + "http://purl.obolibrary.org/obo/fbbt/tracker"; + ; + ; + ; + "http://purl.obolibrary.org/obo/fbbt.owl"; + _:b207; + ; + ; + ; + ; + ; + . - - "OBO serialization of mondo.owl." ; - "Mondo OBO Format edition" ; - "obo" ; - "http://purl.obolibrary.org/obo/mondo.obo" . + + "http://purl.obolibrary.org/obo/fbbt.json" . - - "Obographs serialization of mondo.owl." ; - "Mondo JSON edition" ; - "obo" ; - "http://purl.obolibrary.org/obo/mondo.json" . + + "http://purl.obolibrary.org/obo/fbbt.obo" . - - "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves" ; - "Mondo Base Release" ; - "owl" ; - "http://purl.obolibrary.org/obo/mondo/mondo-base.owl" . + + "http://purl.obolibrary.org/obo/fbbt.owl" . - - "The main ontology classes and their hierarchies, without references to external terms." ; - "Mondo Simple Release" ; - "owl" ; - "http://purl.obolibrary.org/obo/mondo/mondo-simple.owl" . + + "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.obo" . - - "MOP" ; - "active" ; - "Processes at the molecular level" ; - "Molecular Process Ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/rsc-ontologies/rxno/issues" ; - "chemistry-ontologies@googlegroups.com" ; - "http://purl.obolibrary.org/obo/mop.owl" ; - _:b125 ; - ; - . + + "http://purl.obolibrary.org/obo/fbbt/fbbt-simple.owl" . -_:b125 "Colin Batchelor" ; - "batchelorc@rsc.org" . + + "FBcv"; + "active"; + "A structured controlled vocabulary used for various aspects of annotation by FlyBase."; + "FlyBase Controlled Vocabulary"; + ; + "organisms"; + "https://github.com/FlyBase/flybase-controlled-vocabulary/issues"; + ; + "http://purl.obolibrary.org/obo/fbcv.owl"; + _:b208; + ; + ; + ; + . - - "Molecular Process Ontology" ; - "http://purl.obolibrary.org/obo/mop.owl" . + + "http://purl.obolibrary.org/obo/fbcv.json" . - - "Mammalia" ; - "Mammalian" . + + "http://purl.obolibrary.org/obo/fbcv.obo" . - - "Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery" . + + "http://purl.obolibrary.org/obo/fbcv.owl" . - - "The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data" . + + ; + "FBdv"; + "active"; + "A structured controlled vocabulary of the development of Drosophila melanogaster."; + "Drosophila development"; + ; + "anatomy and development"; + "http://purl.obolibrary.org/obo/fbdv/tracker"; + ; + "http://purl.obolibrary.org/obo/fbdv.owl"; + _:b209; + ; + ; + ; + ; + ; + . - - "Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens" . + + "http://purl.obolibrary.org/obo/fbdv.json" . - - "MGI MP Browser" ; - "MGI" . + + "http://purl.obolibrary.org/obo/fbdv.obo" . - - "RGD MP Browser" ; - "RGD" . + + "http://purl.obolibrary.org/obo/fbdv.owl" . - - "Monarch Phenotype Page" ; - "Monarch" . + + "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.obo" . -_:b34 "Sue Bello" ; - "pheno@jax.org" . + + "http://purl.obolibrary.org/obo/fbdv/fbdv-simple.owl" . - - "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies." ; - "MP (OWL edition)" ; - "http://purl.obolibrary.org/obo/mp.owl" ; - . + + ; + "inactive"; + "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase."; + "Fly taxonomy"; + "organisms"; + _:b141; + ; + . - - "A direct translation of the MP (OWL edition) into OBO format." ; - "MP (OBO edition)" ; - "http://purl.obolibrary.org/obo/mp.obo" ; - . + + "http://purl.obolibrary.org/obo/fbsp.owl" . - - "For a description of the format see https://github.com/geneontology/obographs." ; - "MP (obographs JSON edition)" ; - "http://purl.obolibrary.org/obo/mp.json" ; - . + + "FIDEO"; + "active"; + "Food-Drug interactions automatically extracted from scientific literature"; + "Food Interactions with Drugs Evidence Ontology"; + ; + "diet, metabolomics, and nutrition"; + "https://gitub.u-bordeaux.fr/erias/fideo/issues"; + "http://purl.obolibrary.org/obo/fideo.owl"; + _:b210; + ; + . - - "The main ontology plus axioms connecting to select external ontologies, excluding axioms from the the external ontologies themselves." ; - "MP Base Module" ; - "http://purl.obolibrary.org/obo/mp/mp-base.owl" ; - . + + "http://purl.obolibrary.org/obo/fideo.owl" . - - "MPATH" ; - "active" ; - ; - "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes" ; - "Mouse pathology ontology" ; - ; - "health" ; - "https://github.com/PaulNSchofield/mpath/issues" ; - "http://purl.obolibrary.org/obo/mpath.owl" ; - _:b126 ; - ; - . + + "orphaned"; + "An ontology of physico-chemical methods and properties."; + "Physico-chemical methods and properties"; + "chemistry and biochemistry"; + "http://purl.obolibrary.org/obo/fix.owl"; + _:b100; + ; + ; + . -_:b126 "Paul Schofield" ; - "pns12@hermes.cam.ac.uk" . + + "http://purl.obolibrary.org/obo/fix.obo" . - - "http://purl.obolibrary.org/obo/mpath.owl" . + + "http://purl.obolibrary.org/obo/fix.owl" . - - "MPIO" ; - "active" ; - "An ontology of minimum information regarding potential drug-drug interaction information." ; - "Minimum PDDI Information Ontology" ; - ; - "health" ; - "https://github.com/MPIO-Developers/MPIO/issues" ; - "http://purl.obolibrary.org/obo/mpio.owl" ; - _:b127 ; - ; - . + + ; + "FLOPO"; + "active"; + "Traits and phenotypes of flowering plants occurring in digitized Floras"; + "Flora Phenotype Ontology"; + ; + ; + "phenotype"; + "https://github.com/flora-phenotype-ontology/flopoontology/issues"; + "http://purl.obolibrary.org/obo/flopo.owl"; + _:b211; + ; + . -_:b127 "Mathias Brochhausen" ; - "mbrochhausen@uams.edu" . + + "http://purl.obolibrary.org/obo/flopo.owl" . - - "http://purl.obolibrary.org/obo/mpio.owl" . + + "inactive"; + "Influenza Ontology"; + "health"; + "http://purl.obolibrary.org/obo/flu/tracker"; + _:b142; + ; + . - - "MRO" ; - "active" ; - "An ontology for Major Histocompatibility Complex (MHC) restriction in experiments" ; - "MHC Restriction Ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/IEDB/MRO/issues" ; - "http://purl.obolibrary.org/obo/mro.owl" ; - _:b128 ; - ; - . + + "http://purl.obolibrary.org/obo/flu.owl" . -_:b128 "Bjoern Peters" ; - "bpeters@lji.org" . + + ; + "FMA"; + "inactive"; + "This is currently a slimmed down version of FMA"; + "Foundational Model of Anatomy Ontology (subset)"; + ; + ; + ; + ; + "anatomy and development"; + "https://bitbucket.org/uwsig/fma/issues"; + "http://purl.obolibrary.org/obo/fma.owl"; + _:b115; + ; + ; + . - - "http://purl.obolibrary.org/obo/mro.owl" . + + "http://purl.obolibrary.org/obo/fma.owl" . - - "MS" ; - "active" ; - ; - ; - "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry." ; - "Mass spectrometry ontology" ; - ; - ; - "investigations" ; - "https://github.com/HUPO-PSI/psi-ms-CV/issues" ; - "psidev-ms-vocab@lists.sourceforge.net" ; - "http://purl.obolibrary.org/obo/ms.owl" ; - _:b129 ; - ; - ; - ; - . + + "FOBI"; + "active"; + ; + ; + "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data"; + "Food-Biomarker Ontology"; + ; + ; + ; + "diet, metabolomics, and nutrition"; + "https://github.com/pcastellanoescuder/FoodBiomarkerOntology/issues"; + "http://purl.obolibrary.org/obo/fobi.owl"; + _:b212; + ; + . - - "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary." . + + "FOBI is an ontology to represent food intake data and associate it with metabolomic data"; + "owl-rdf/xml"; + "http://purl.obolibrary.org/obo/fobi.owl" . -_:b129 "Joshua Klein" ; - "joshua.adam.klein@gmail.com" . + + "FOODON"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research"; + "Food Ontology"; + ; + ; + "diet, metabolomics, and nutrition"; + "https://github.com/FoodOntology/foodon/issues/"; + "http://purl.obolibrary.org/obo/foodon.owl"; + _:b213; + ; + ; + . - - "http://purl.obolibrary.org/obo/ms.obo" . + + "FoodOn ontology with import file references and over 9,000 food products"; + "owl-rdf/xml"; + "http://purl.obolibrary.org/obo/foodon.owl" . - - "http://purl.obolibrary.org/obo/ms.owl" . + + "FoodOn core ontology (currently the same as foodon.owl)"; + "owl-rdf/xml"; + "http://purl.obolibrary.org/obo/foodon_core.owl" . - - "Analyzing gene expression data in mice with the Neuro Behavior Ontology" . + + "FOVT"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + "FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT leverages the BioCollections Ontology (BCO) to link observations of individual specimens to their trait values. Traits are defined in the Ontology of Biological Attributes (OBA)."; + "FuTRES Ontology of Vertebrate Traits"; + ; + "phenotype"; + "https://github.com/futres/fovt/issues"; + "http://purl.obolibrary.org/obo/fovt.owl"; + _:b214; + ; + ; + ; + ; + . - - "BioPortal Ontology Browser" ; - "BioPortal" . + + "http://purl.obolibrary.org/obo/fovt.obo" . -_:b67 "George Gkoutos" ; - "g.gkoutos@bham.ac.uk" . + + "http://purl.obolibrary.org/obo/fovt.owl" . - - "http://purl.obolibrary.org/obo/nbo.owl" . + + "http://purl.obolibrary.org/obo/fovt/fovt-base.obo" . - - "NCBI Taxonomy Browser" ; - "NCBI" . + + "http://purl.obolibrary.org/obo/fovt/fovt-base.owl" . -_:b8 "Frederic Bastian" ; - "frederic.bastian@unil.ch" . + + ; + "FYPO"; + "active"; + "FYPO is a formal ontology of phenotypes observed in fission yeast."; + "Fission Yeast Phenotype Ontology"; + ; + ; + "phenotype"; + "https://github.com/pombase/fypo/issues"; + "http://purl.obolibrary.org/obo/fypo.owl"; + _:b215; + ; + ; + . - - "Main release" ; - "http://purl.obolibrary.org/obo/ncbitaxon.owl" . + + "http://purl.obolibrary.org/obo/fypo.obo" . - - "OBO Format version of Main release" ; - "http://purl.obolibrary.org/obo/ncbitaxon.obo" . + + "http://purl.obolibrary.org/obo/fypo.owl" . - - "OBOGraphs JSON version of Main release" ; - "http://purl.obolibrary.org/obo/ncbitaxon.json" . + + "GALLONT"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + "Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This ontology is used to annotate gall phenotypes (e.g., their colors, textures, sizes, locations on the plant) in a semantic way, in order to facilitate discoveries about the genetic and physiologic mechanisms responsible for such phenotypes. The ontology can also be used as a controlled vocabulary for natural language descriptions of plant galls."; + "Plant Gall Ontology"; + ; + "phenotype"; + "https://github.com/adeans/gallont/issues"; + "http://purl.obolibrary.org/obo/gallont.owl"; + _:b217; + ; + ; + ; + . - - "taxslim" ; - "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl" ; - . + + "http://purl.obolibrary.org/obo/gallont.json" . - - "taxslim disjointness axioms" ; - "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl" ; - . + + "http://purl.obolibrary.org/obo/gallont.obo" . -_:b68 "None" ; - "noreply@example.com" . + + "http://purl.obolibrary.org/obo/gallont.owl" . - - "A direct transformation of the standard NCIt content using OBO-style term and ontology IRIs and annotation properties." ; - "NCIt OBO Edition OWL format" ; - "http://purl.obolibrary.org/obo/ncit.owl" . + + "GAZ"; + "active"; + "A gazetteer constructed on ontological principles. The countries are actively maintained."; + "Gazetteer"; + ; + "environment"; + "https://github.com/EnvironmentOntology/gaz/issues"; + "https://groups.google.com/forum/#!forum/obo-gazetteer"; + "http://purl.obolibrary.org/obo/gaz.owl"; + _:b218; + ; + ; + ; + . - - "NCIt OBO Edition OBO format" ; - "http://purl.obolibrary.org/obo/ncit.obo" . + + "http://purl.obolibrary.org/obo/gaz.obo" . - - "NCRO" ; - "active" ; - "An ontology for non-coding RNA, both of biological origin, and engineered." ; - "Non-Coding RNA Ontology" ; - ; - "investigations" ; - "https://github.com/OmniSearch/ncro/issues" ; - "ncro-devel@googlegroups.com, ncro-discuss@googlegroups.com" ; - "http://purl.obolibrary.org/obo/ncro.owl" ; - _:b130 ; - ; - . + + "http://purl.obolibrary.org/obo/gaz.owl" . -_:b130 "Jingshan Huang" ; - "huang@southalabama.edu" . + + "A country specific subset of the GAZ."; + "GAZ countries"; + "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl" . - - "NCRO development version" ; - "http://purl.obolibrary.org/obo/ncro/dev/ncro.owl" . + + "GECKO"; + "active"; + "An ontology to represent genomics cohort attributes"; + "Genomics Cohorts Knowledge Ontology"; + ; + "organisms"; + "https://github.com/IHCC-cohorts/GECKO/issues"; + "http://purl.obolibrary.org/obo/gecko.owl"; + _:b219; + ; + . - - "NGBO" ; - "active" ; - "The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management." ; - "Next Generation Biobanking Ontology" ; - ; - "investigations" ; - "https://github.com/Dalalghamdi/NGBO/issues" ; - "http://purl.obolibrary.org/obo/ngbo.owl" ; - _:b131 ; - ; - . + + "http://purl.obolibrary.org/obo/gecko.owl" . -_:b131 "Dalia Alghamdi" ; - "dal.alghamdi92@gmail.com" . + + "GENEPIO"; + "active"; + ; + ; + ; + ; + ; + "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks."; + "Genomic Epidemiology Ontology"; + ; + "health"; + "https://github.com/GenEpiO/genepio/issues/"; + "http://purl.obolibrary.org/obo/genepio.owl"; + _:b220; + ; + ; + . - - "http://purl.obolibrary.org/obo/ngbo.owl" . + + "http://purl.obolibrary.org/obo/genepio.owl"; + . - - "NOMEN" ; - "active" ; - "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature." ; - "NOMEN - A nomenclatural ontology for biological names" ; - ; - "information" ; - ; - "https://github.com/SpeciesFileGroup/nomen/issues" ; - "https://groups.google.com/forum/#!forum/nomen-discuss" ; - "http://purl.obolibrary.org/obo/nomen.owl" ; - _:b132 ; - ; - . + + "GENO"; + "active"; + "An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and diseases."; + "Genotype Ontology"; + ; + "biological systems"; + "https://github.com/monarch-initiative/GENO-ontology/issues"; + "http://purl.obolibrary.org/obo/geno.owl"; + _:b221; + ; + . - - "NSF ABI-1356381" . + + "GENO"; + "http://purl.obolibrary.org/obo/geno.owl" . -_:b132 "Matt Yoder" ; - "diapriid@gmail.com" . + + "GEO"; + "active"; + "An ontology of geographical entities"; + "Geographical Entity Ontology"; + ; + "environment"; + "https://github.com/ufbmi/geographical-entity-ontology/issues"; + "http://purl.obolibrary.org/obo/geo.owl"; + _:b222; + ; + . - - "core ontology" ; - "NOMEN" ; - ; - "http://purl.obolibrary.org/obo/nomen.owl" . + + "http://purl.obolibrary.org/obo/geo.owl" . - - "OAE" ; - "active" ; - "A biomedical ontology in the domain of adverse events" ; - "Ontology of Adverse Events" ; - ; - "health" ; - "https://github.com/OAE-ontology/OAE/issues" ; - "http://purl.obolibrary.org/obo/oae.owl" ; - _:b133 ; - ; - . + + "GNO"; + "active"; + "GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). GNOme organizes these stable accessions for interative browsing, for text-based searching, and for automated reasoning with well-defined characterization levels."; + "Glycan Naming and Subsumption Ontology (GNOme)"; + ; + ; + "chemistry and biochemistry"; + "https://github.com/glygen-glycan-data/GNOme/issues"; + ; + ; + "http://purl.obolibrary.org/obo/gno.owl"; + _:b223; + ; + ; + ; + . -_:b133 "Yongqunh He" ; - "yongqunh@med.umich.edu" . + + "Glycan Naming and Subsumption Ontology, JSON format (automated conversion from OWL)"; + "http://purl.obolibrary.org/obo/gno.json" . - - "http://purl.obolibrary.org/obo/oae.owl" . + + "Glycan Naming and Subsumption Ontology, OBO format (automated conversion from OWL)"; + "http://purl.obolibrary.org/obo/gno.obo" . - - "OARCS" ; - "active" ; - "OArCS is an ontology describing the Arthropod ciruclatory system." ; - "Ontology of Arthropod Circulatory Systems" ; - ; - "anatomy and development" ; - "https://github.com/aszool/oarcs/issues" ; - "http://purl.obolibrary.org/obo/oarcs.owl" ; - _:b134 ; - ; - . + + "Glycan Naming and Subsumption Ontology, OWL format (primary)"; + "http://purl.obolibrary.org/obo/gno.owl" . -_:b134 "Matt Yoder" ; - "mjyoder@illinois.edu" . + + ; + "GO"; + "active"; + ; + ; + ; + ; + ; + "An ontology for describing the function of genes and gene products"; + "Gene Ontology"; + ; + ; + ; + "biological systems"; + "https://github.com/geneontology/go-ontology/issues/"; + ; + "http://purl.obolibrary.org/obo/go.owl"; + _:b224; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/oarcs.owl" . + + "Equivalent to go.owl, in obograph json format"; + "GO (JSON edition)"; + "http://purl.obolibrary.org/obo/go.json"; + . - - "The Ontology of Biological Attributes (OBA) - computational traits for the life sciences" . + + "Equivalent to go.owl, in obo format"; + "GO (OBO Format edition)"; + "http://purl.obolibrary.org/obo/go.obo"; + . -_:b81 "Chris Mungall" ; - "cjmungall@lbl.gov" . + + "The main ontology in OWL. This is self contained and does not have connections to other OBO ontologies"; + "GO (OWL edition)"; + "http://purl.obolibrary.org/obo/go.owl"; + . - - "http://purl.obolibrary.org/obo/oba.owl" . + + "Bridging axioms between nifstd and go"; + "GO bridge to NIFSTD"; + ; + a . - - "http://purl.obolibrary.org/obo/oba.obo" . + + "As go-plus.owl, in obographs json format"; + "GO-Plus"; + "http://purl.obolibrary.org/obo/go/extensions/go-plus.json"; + . - - "http://purl.obolibrary.org/obo/oba/subsets/oba-basic.obo" . + + "The main ontology plus axioms connecting to select external ontologies, with subsets of those ontologies"; + "GO-Plus"; + "http://purl.obolibrary.org/obo/go/extensions/go-plus.owl"; + . - - "OBCS" ; - "active" ; - "A biomedical ontology in the domain of biological and clinical statistics." ; - "Ontology of Biological and Clinical Statistics" ; - ; - "information technology" ; - "https://github.com/obcs/obcs/issues" ; - "http://purl.obolibrary.org/obo/obcs.owl" ; - _:b135 ; - ; - . + + "Classes added to ncbitaxon for groupings such as prokaryotes"; + "GO Taxon Groupings"; + "http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl"; + . -_:b135 "Jie Zheng" ; - "jiezhen@med.umich.edu" . + + "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves"; + "GO Base Module"; + "http://purl.obolibrary.org/obo/go/go-base.owl"; + . - - "http://purl.obolibrary.org/obo/obcs.owl" . + + "As go-basic.obo, in json format"; + "GO-Basic, Filtered, for use with legacy tools (JSON)"; + "http://purl.obolibrary.org/obo/go/go-basic.json"; + . - - "The Ontology for Biomedical Investigations" . + + "Basic version of the GO, filtered such that the graph is guaranteed to be acyclic and annotations can be propagated up the graph. The relations included are is a, part of, regulates, negatively regulates and positively regulates. This version excludes relationships that cross the 3 GO hierarchies."; + "GO-Basic, Filtered, for use with legacy tools"; + "http://purl.obolibrary.org/obo/go/go-basic.obo"; + . - - "BioPortal Browser" ; - "BioPortal" . + + "Equivalent to go.owl, but released daily. Note the snapshot release is not archived."; + "GO (OBO Format edition), daily snapshot release"; + "http://purl.obolibrary.org/obo/go/snapshot/go.obo"; + . -_:b9 "Bjoern Peters" ; - "bpeters@lji.org" . + + "Equivalent to go.owl, but released daily. Note the snapshot release is not archived."; + "GO (OWL edition), daily snapshot release"; + "http://purl.obolibrary.org/obo/go/snapshot/go.owl"; + . - - "The full version of OBI in OWL format" ; - "OBI" ; - "http://purl.obolibrary.org/obo/obi.owl" . + + "inactive"; + "Cereal Plant Gross Anatomy"; + "anatomy and development"; + _:b143; + . - - "The OBO-format version of OBI" ; - "OBI in OBO" ; - "http://purl.obolibrary.org/obo/obi.obo" . + + "GSSO"; + "active"; + "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences."; + "Gender, Sex, and Sexual Orientation (GSSO) ontology"; + ; + "organisms"; + "https://github.com/Superraptor/GSSO/issues"; + "http://purl.obolibrary.org/obo/gsso.owl"; + _:b95; + ; + ; + ; + . - - "A collection of important high-level terms and their relations from OBI and other ontologies" ; - "OBI Core" ; - "http://purl.obolibrary.org/obo/obi/obi_core.owl" . + + "http://purl.obolibrary.org/obo/gsso.json" . - - "Base module for OBI" ; - "OBI Base module" ; - "http://purl.obolibrary.org/obo/obi/obi-base.owl" . + + "http://purl.obolibrary.org/obo/gsso.obo" . - - "OBIB" ; - "active" ; - "An ontology built for annotation and modeling of biobank repository and biobanking administration" ; - "Ontology for Biobanking" ; - ; - "investigations" ; - "https://github.com/biobanking/biobanking/issues" ; - "http://purl.obolibrary.org/obo/obib.owl" ; - _:b136 ; - ; - . + + "http://purl.obolibrary.org/obo/gsso.owl" . -_:b136 "Justin Whorton" ; - "jmwhorton@uams.edu" . + + "inactive"; + "Habronattus courtship"; + "organisms"; + _:b144; + . - - "http://purl.obolibrary.org/obo/obib.owl" . + + "HANCESTRO"; + "active"; + "The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies."; + "Human Ancestry Ontology"; + ; + ; + "organisms"; + "https://github.com/EBISPOT/hancestro/issues"; + "http://purl.obolibrary.org/obo/hancestro.owl"; + _:b225; + ; + ; + . - - "OCCO" ; - "active" ; - "An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau of Labor Statistics Standard Occupational Classification (US SOC), the International Standard Classification of Occupations (ISCO), the UK National Statistics Standard Occupational Classification (UK SOC), and the European Skills, Competences, Qualifications and Occupations (ESCO) of the European Union." ; - "Occupation Ontology" ; - ; - "information" ; - "https://github.com/Occupation-Ontology/OccO/issues" ; - ; - "http://purl.obolibrary.org/obo/occo.owl" ; - _:b137 ; - ; - . + + "Base version of HANCESTRO"; + "HANCESTRO Base"; + "http://purl.obolibrary.org/obo/hancestro-base.owl" . - - "BioPortal Ontology Browser" ; - "BioPortal" . + + "The full version of HANCESTRO in OWL format, with BFO upper hierarchy for easier integration with other ontologies"; + "HANCESTRO"; + "http://purl.obolibrary.org/obo/hancestro.owl" . -_:b137 "Jie Zheng" ; - "zhengj2007@gmail.com" . + + ; + "HAO"; + "active"; + "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)"; + "Hymenoptera Anatomy Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/hymao/hao/issues"; + "http://purl.obolibrary.org/obo/hao.owl"; + _:b226; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/occo.owl" . + + "http://purl.obolibrary.org/obo/hao.obo" . - - "OGG" ; - "active" ; - "A formal ontology of genes and genomes of biological organisms." ; - "The Ontology of Genes and Genomes" ; - ; - "biological systems" ; - "https://bitbucket.org/hegroup/ogg/issues/" ; - "http://purl.obolibrary.org/obo/ogg.owl" ; - _:b138 ; - ; - . + + "http://purl.obolibrary.org/obo/hao.owl" . -_:b138 "Yongqun Oliver He" ; - "yongqunh@med.umich.edu" . + + "http://purl.obolibrary.org/obo/hao/depictions.owl" . - - "http://purl.obolibrary.org/obo/ogg.owl" . + + "HOM"; + "active"; + "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology."; + "Homology Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/BgeeDB/homology-ontology/issues"; + "http://purl.obolibrary.org/obo/hom.owl"; + _:b228; + ; + . - - "Toward an ontological treatment of disease and diagnosis" . + + "http://purl.obolibrary.org/obo/hom.owl" . - - "Biomarkers in the Ontology for General Medical Science" . + + ; + "HP"; + "active"; + "The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary and other disease."; + "Human Phenotype Ontology (HPO)"; + ; + ; + ; + ; + ; + "phenotype"; + "https://github.com/obophenotype/human-phenotype-ontology/issues/"; + "https://groups.io/g/human-phenotype-ontology"; + ; + ; + "http://purl.obolibrary.org/obo/hp.owl"; + _:b96; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + . -_:b103 "Brian Aevermann" ; - "baeverma@jcvi.org" . + + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format."; + "Official HPO release in obographs JSON format"; + "json"; + "http://purl.obolibrary.org/obo/hp.json" . - - "http://purl.obolibrary.org/obo/ogms.owl" . + + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format."; + "Official HPO release in OBO format"; + "obo"; + "http://purl.obolibrary.org/obo/hp.obo" . - - "OHD" ; - "active" ; - "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies." ; - "Oral Health and Disease Ontology" ; - ; - ; - "health" ; - "https://github.com/oral-health-and-disease-ontologies/ohd-ontology/issues" ; - "http://purl.obolibrary.org/obo/ohd.owl" ; - _:b139 ; - ; - . + + "Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML)."; + "Official HPO release in OWL"; + "owl"; + "http://purl.obolibrary.org/obo/hp.owl" . - - "Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology" . + + "https://hpo.jax.org/app/data/annotations"; + "HPO gene to phenotype annotations"; + "tsv"; + "http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt" . -_:b139 "Bill Duncan" ; - "wdduncan@gmail.com" . + + "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format."; + "HPO base release in obographs JSON format"; + "obo"; + "http://purl.obolibrary.org/obo/hp/hp-base.json" . - - "Oral Health and Disease Ontology" ; - "http://purl.obolibrary.org/obo/ohd.owl" . + + "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format."; + "HPO base release in OBO format"; + "obo"; + "http://purl.obolibrary.org/obo/hp/hp-base.obo" . - - "OHMI" ; - "active" ; - "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions." ; - "Ontology of Host-Microbiome Interactions" ; - ; - "organisms" ; - "https://github.com/ohmi-ontology/ohmi/issues" ; - "http://groups.google.com/group/ohmi-discuss" ; - "http://purl.obolibrary.org/obo/ohmi.owl" ; - _:b140 ; - ; - . + + "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format."; + "HPO base release in OWL format"; + "owl"; + "http://purl.obolibrary.org/obo/hp/hp-base.owl" . -_:b140 "Yongqun Oliver He" ; - "yongqunh@med.umich.edu" . + + "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format."; + "HPO full release in obographs JSON format"; + "json"; + "http://purl.obolibrary.org/obo/hp/hp-full.json" . - - "http://purl.obolibrary.org/obo/ohmi.owl" . + + "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format."; + "HPO full release in OBO format"; + "obo"; + "http://purl.obolibrary.org/obo/hp/hp-full.obo" . - - "OHPI" ; - "active" ; - "OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is developed to represent manually curated HPI knowledge available in the PHIDIAS resource." ; - "Ontology of Host Pathogen Interactions" ; - ; - ; - "biological systems" ; - "https://github.com/OHPI/ohpi/issues" ; - "http://groups.google.com/group/ohpi-discuss" ; - "http://purl.obolibrary.org/obo/ohpi.owl" ; - _:b141 ; - ; - . + + "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format."; + "HPO full release in OWL format"; + "owl"; + "http://purl.obolibrary.org/obo/hp/hp-full.owl" . - - "Victors: a web-based knowledge base of virulence factors in human and animal pathogens" . + + "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format."; + "HPO International Edition in obographs JSON format"; + "json"; + "http://purl.obolibrary.org/obo/hp/hp-international.json" . -_:b141 "Edison Ong" ; - "edong@umich.edu" . + + "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format."; + "HPO International Edition in OBO format"; + "obo"; + "http://purl.obolibrary.org/obo/hp/hp-international.obo" . - - "http://purl.obolibrary.org/obo/ohpi.owl" . + + "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format."; + "HPO International Edition in OWL format"; + "owl"; + "http://purl.obolibrary.org/obo/hp/hp-international.owl" . -_:b111 "Jingshan Huang" ; - "huang@southalabama.edu" . + + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format."; + "HPO simple, manually classified, without imports in obographs JSON format"; + "json"; + "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json" . - - "http://purl.obolibrary.org/obo/omit.owl" . + + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format."; + "HPO simple, manually classified, without imports in OBO format"; + "obo"; + "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.obo" . -_:b40 "Chris Mungall" ; - "cjmungall@lbl.gov" . + + "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format."; + "HPO simple, manually classified, without imports in OWL format"; + "owl"; + "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl" . - - "http://purl.obolibrary.org/obo/omo.owl" . + + "https://hpo.jax.org/app/data/annotations"; + "HPO Annotations (Phenotype to Disease)"; + "tsv"; + "http://purl.obolibrary.org/obo/hp/phenotype.hpoa" . - - "An ontology for microbial phenotypes" . + + "https://hpo.jax.org/app/data/annotations"; + "HPO phenotype to gene annotations"; + "tsv"; + "http://purl.obolibrary.org/obo/hp/phenotype_to_genes.txt" . -_:b112 "James C. Hu" ; - "jimhu@tamu.edu" . + + "HsapDv"; + "active"; + "Life cycle stages for Human"; + "Human Developmental Stages"; + ; + "anatomy and development"; + "https://github.com/obophenotype/developmental-stage-ontologies/issues"; + "http://purl.obolibrary.org/obo/hsapdv.owl"; + _:b229; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/omp.owl" . + + "http://purl.obolibrary.org/obo/hsapdv.obo" . - - "http://purl.obolibrary.org/obo/omp.obo" . + + "http://purl.obolibrary.org/obo/hsapdv.owl" . - - "The ontology of medically related social entities: recent developments" . + + "HSO"; + "active"; + ; + ; + ; + ; + ; + "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance."; + "Health Surveillance Ontology"; + ; + "health"; + "https://github.com/SVA-SE/HSO/issues/"; + "http://purl.obolibrary.org/obo/hso.owl"; + _:b230; + ; + ; + . -_:b105 "Bill Hogan" ; - "hoganwr@gmail.com" . + + "http://purl.obolibrary.org/obo/hso.owl"; + . - - "http://purl.obolibrary.org/obo/omrse.owl" . + + "HTN"; + "active"; + "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines"; + "Hypertension Ontology"; + ; + "health"; + "https://github.com/aellenhicks/htn_owl/issues"; + "http://purl.obolibrary.org/obo/htn.owl"; + _:b231; + ; + . - - "ONE" ; - "active" ; - ; - ; - ; - "An ontology to standardize research output of nutritional epidemiologic studies." ; - "Ontology for Nutritional Epidemiology" ; - ; - "diet, metabolomics, and nutrition" ; - "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies/issues" ; - "http://purl.obolibrary.org/obo/one.owl" ; - _:b142 ; - ; - ; - . + + "HTN"; + "http://purl.obolibrary.org/obo/htn.owl" . - - "ONS" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - "An ontology for description of concepts in the nutritional studies domain." ; - "Ontology for Nutritional Studies" ; - ; - ; - "diet, metabolomics, and nutrition" ; - "https://github.com/enpadasi/Ontology-for-Nutritional-Studies/issues" ; - "http://purl.obolibrary.org/obo/ons.owl" ; - _:b143 ; - ; - ; - . + + "IAO"; + "active"; + "An ontology of information entities."; + "Information Artifact Ontology"; + ; + "information"; + "https://github.com/information-artifact-ontology/IAO/issues"; + "http://purl.obolibrary.org/obo/iao.owl"; + _:b232; + ; + ; + ; + ; + . -_:b142 "Chen Yang" ; - "chenyangnutrition@gmail.com" . + + "http://purl.obolibrary.org/obo/iao.owl" . - - "http://purl.obolibrary.org/obo/one.owl" . + + "An ontology based on a theory of document acts describing what people can do with documents"; + "ontology of document acts"; + "http://purl.obolibrary.org/obo/iao/d-acts.owl"; + _:b233 . - - "ONS: an ontology for a standardized description of interventions and observational studies in nutrition" . + + "IAO dev"; + "http://purl.obolibrary.org/obo/iao/dev/iao.owl" . -_:b143 "Francesco Vitali" ; - "francesco.vitali@ibba.cnr.it" . + + "IAO ontology metadata"; + "http://purl.obolibrary.org/obo/iao/ontology-metadata.owl"; + . - - "ONS latest release" ; - "http://purl.obolibrary.org/obo/ons.owl" . + + "ICEO"; + "active"; + "ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs)."; + "Integrative and Conjugative Element Ontology"; + ; + ; + "microbiology"; + "https://github.com/ontoice/ICEO/issues"; + "http://purl.obolibrary.org/obo/iceo.owl"; + _:b234; + ; + . - - "ONTOAVIDA" ; - "active" ; - ; - ; - ; - ; - ; - "OntoAvida develops an integrated vocabulary for the description of the most widely-used computational approach for studying evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment)." ; - "OntoAvida: ontology for Avida digital evolution platform" ; - ; - ; - "simulation" ; - "https://gitlab.com/fortunalab/ontoavida/-/issues" ; - ; - "http://purl.obolibrary.org/obo/ontoavida.owl" ; - _:b144 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/iceo.owl" . - - "GSSO" ; - "active" ; - "The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, and sexual orientation for primary usage in the biomedical and adjacent sciences." ; - "Gender, Sex, and Sexual Orientation (GSSO) ontology" ; - ; - "organisms" ; - "https://github.com/Superraptor/GSSO/issues" ; - "http://purl.obolibrary.org/obo/gsso.owl" ; - _:b145 ; - ; - ; - ; - . + + "ICO"; + "active"; + "An ontology of clinical informed consents"; + "Informed Consent Ontology"; + ; + "investigations"; + "https://github.com/ICO-ontology/ICO/issues"; + "http://purl.obolibrary.org/obo/ico.owl"; + _:b235; + ; + . - - "STATO" ; - "active" ; - "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results." ; - "The Statistical Methods Ontology" ; - ; - ; - ; - "information technology" ; - "https://github.com/ISA-tools/stato/issues" ; - "http://purl.obolibrary.org/obo/stato.owl" ; - _:b146 ; - ; - . + + "http://purl.obolibrary.org/obo/ico.owl" . - - "Ontology for the Avida digital evolution platform" . + + ; + "IDO"; + "active"; + "A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontology that hosts terms of general relevance across the domain, while extension ontologies host terms to specific to a particular part of the domain."; + "Infectious Disease Ontology"; + ; + ; + "health"; + "https://github.com/infectious-disease-ontology/infectious-disease-ontology/issues"; + "http://purl.obolibrary.org/obo/ido.owl"; + _:b236; + ; + . - - "Ontoavida HTML Browser" ; - "Human-readable (HTML)" . + + "http://purl.obolibrary.org/obo/ido.owl" . -_:b144 "Miguel A. Fortuna" ; - "fortuna@ebd.csic.es" . + + "inactive"; + "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it."; + "Malaria Ontology"; + ; + "health"; + "http://purl.obolibrary.org/obo/idomal.owl"; + _:b116; + ; + ; + . - - "The main ontology in OWL" ; - "OWL" ; - "http://purl.obolibrary.org/obo/ontoavida.owl" ; - . + + "http://purl.obolibrary.org/obo/idomal.obo" . - - "Equivalent to ontoavida.owl, in obo format" ; - "OBO" ; - "http://purl.obolibrary.org/obo/ontoavida.obo" ; - . + + "http://purl.obolibrary.org/obo/idomal.owl" . - - "ONTONEO" ; - "active" ; - "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby." ; - "Obstetric and Neonatal Ontology" ; - ; - ; - ; - "health" ; - "https://github.com/ontoneo-project/Ontoneo/issues" ; - "http://groups.google.com/group/ontoneo-discuss" ; - ; - ; - "http://purl.obolibrary.org/obo/ontoneo.owl" ; - _:b147 ; - ; - . + + "inactive"; + "Event (INOH pathway ontology)"; + "chemistry and biochemistry"; + . - - "OntONeo: The Obstetric and Neonatal Ontology" . + + "inactive"; + "Molecule role (INOH Protein name/family name ontology)"; + "chemistry and biochemistry"; + _:b145; + . - - "Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal Domain" . + + "INO"; + "active"; + "An ontology of interactions and interaction networks"; + "Interaction Network Ontology"; + ; + ; + "biological systems"; + "https://github.com/INO-ontology/ino/issues"; + "http://purl.obolibrary.org/obo/ino.owl"; + _:b237; + ; + . - - "BioPortal Browser" ; - "BioPortal" . + + "http://purl.obolibrary.org/obo/ino.owl" . - - "OntoBee Browser" ; - "OntoBee" . + + "inactive"; + "Protein Domains"; + "chemistry and biochemistry"; + _:b147; + . -_:b147 "Fernanda Farinelli" ; - "fernanda.farinelli@gmail.com" . + + "KISAO"; + "active"; + "A classification of algorithms for simulating biology, their parameters, and their outputs"; + "Kinetic Simulation Algorithm Ontology"; + ; + ; + "simulation"; + ; + ; + "https://github.com/SED-ML/KiSAO/issues"; + ; + ; + ; + "http://purl.obolibrary.org/obo/kisao.owl"; + _:b97; + ; + . - - "The full version of ONTONEO in OWL format" ; - "ONTONEO" ; - "http://purl.obolibrary.org/obo/ontoneo.owl" . + + "http://purl.obolibrary.org/obo/kisao.owl" . - - "OOSTT" ; - "active" ; - "An ontology built for representating the organizational components of trauma centers and trauma systems." ; - "Ontology of Organizational Structures of Trauma centers and Trauma systems" ; - ; - "health" ; - "https://github.com/OOSTT/OOSTT/issues" ; - "http://purl.obolibrary.org/obo/oostt.owl" ; - _:b148 ; - ; - . + + ; + "LABO"; + "active"; + ; + ; + ; + ; + ; + ; + "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents."; + "clinical LABoratory Ontology"; + ; + ; + "information"; + "https://github.com/OpenLHS/LABO/issues"; + "http://purl.obolibrary.org/obo/labo.owl"; + _:b239; + ; + . -_:b148 "Mathias Brochhausen" ; - "mbrochhausen@gmail.com" . + + "http://purl.obolibrary.org/obo/labo.owl" . - - "http://purl.obolibrary.org/obo/oostt.owl" . + + "LEPAO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research. LEPAO is developed in part by BIOfid (The Specialised Information Service Biodiversity Research)."; + "Lepidoptera Anatomy Ontology"; + ; + "anatomy and development"; + "https://github.com/insect-morphology/lepao/issues"; + "http://purl.obolibrary.org/obo/lepao.owl"; + _:b240; + ; + ; + . - - "OPL" ; - "active" ; - "A reference ontology for parasite life cycle stages." ; - "Ontology for Parasite LifeCycle" ; - ; - "organisms" ; - "https://github.com/OPL-ontology/OPL/issues" ; - "http://purl.obolibrary.org/obo/opl.owl" ; - _:b149 ; - ; - . + + "http://purl.obolibrary.org/obo/lepao.obo" . -_:b149 "Jie Zheng" ; - "zhengj2007@gmail.com" . + + "http://purl.obolibrary.org/obo/lepao.owl" . - - "http://purl.obolibrary.org/obo/opl.owl" . + + "inactive"; + "An ontology representation of the LIPIDMAPS nomenclature classification."; + "Lipid Ontology"; + "chemistry and biochemistry"; + _:b148 . -_:b106 "Yongqun Oliver He" ; - "yongqunh@med.umich.edu" . + + "inactive"; + "Loggerhead nesting"; + "organisms"; + _:b149; + . - - "http://purl.obolibrary.org/obo/opmi.owl" . + + ; + "MA"; + "active"; + "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)."; + "Mouse adult gross anatomy"; + ; + "anatomy and development"; + "https://github.com/obophenotype/adult-mouse-anatomy-ontology/issues"; + "http://purl.obolibrary.org/obo/ma.owl"; + _:b241; + ; + ; + ; + . - - "ORNASEQ" ; - "active" ; - "An application ontology designed to annotate next-generation sequencing experiments performed on RNA." ; - "Ontology of RNA Sequencing" ; - ; - "investigations" ; - "https://github.com/safisher/ornaseq/issues" ; - "http://purl.obolibrary.org/obo/ornaseq.owl" ; - _:b150 ; - ; - . + + "http://purl.obolibrary.org/obo/ma.obo" . -_:b150 "Stephen Fisher" ; - "safisher@upenn.edu" . + + "http://purl.obolibrary.org/obo/ma.owl" . - - "http://purl.obolibrary.org/obo/ornaseq.owl" . + + "MAMO"; + "orphaned"; + "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features."; + "Mathematical modeling ontology"; + ; + "simulation"; + "http://sourceforge.net/p/mamo-ontology/tickets/"; + "http://purl.obolibrary.org/obo/mamo.owl"; + ; + . - - "OVAE" ; - "active" ; - "A biomedical ontology in the domain of vaccine adverse events." ; - "Ontology of Vaccine Adverse Events" ; - ; - "health" ; - "https://github.com/OVAE-Ontology/ovae/issues" ; - "http://purl.obolibrary.org/obo/ovae.owl" ; - _:b151 ; - ; - . + + "http://purl.obolibrary.org/obo/mamo.owl" . -_:b151 "Yongqunh He" ; - "yongqunh@med.umich.edu" . + + "inactive"; + "Multiple alignment"; + "chemistry and biochemistry"; + _:b150; + . - - "http://purl.obolibrary.org/obo/ovae.owl" . + + "inactive"; + "Minimal anatomical terminology"; + "anatomy and development"; + _:b151 . - - "The anatomy of phenotype ontologies: principles, properties and applications" . + + "MAXO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, therapies, treatments, and recommendations."; + "Medical Action Ontology"; + ; + "health"; + "https://github.com/monarch-initiative/MAxO/issues"; + "http://purl.obolibrary.org/obo/maxo.owl"; + _:b242; + ; + ; + ; + ; + ; + ; + . - - "Using ontologies to describe mouse phenotypes" . + + "http://purl.obolibrary.org/obo/maxo.json" . - - "BioPortal Ontology Browser" ; - "BioPortal" . + + "http://purl.obolibrary.org/obo/maxo.obo" . -_:b10 "George Gkoutos" ; - "g.gkoutos@gmail.com" . + + "http://purl.obolibrary.org/obo/maxo.owl" . - - "http://purl.obolibrary.org/obo/pato.owl" . + + "http://purl.obolibrary.org/obo/maxo/maxo-base.json" . - - "http://purl.obolibrary.org/obo/pato.obo" . + + "http://purl.obolibrary.org/obo/maxo/maxo-base.obo" . - - "http://purl.obolibrary.org/obo/pato.json" . + + "http://purl.obolibrary.org/obo/maxo/maxo-base.owl" . - - "Includes axioms linking to other ontologies, but no imports of those ontologies" ; - "http://purl.obolibrary.org/obo/pato/pato-base.owl" . + + "MCO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "Microbial Conditions Ontology is an ontology..."; + "Microbial Conditions Ontology"; + ; + "investigations"; + "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology/issues"; + "http://purl.obolibrary.org/obo/mco.owl"; + _:b243; + ; + ; + . - - "PBPKO" ; - "active" ; - "An ontology for modeling and understanding of pharmacokinetics in biological systems." ; - "Physiologically-Based Pharmacokinetic Ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/InSilicoVida-Research-Lab/pbpko/issues" ; - ; - "http://purl.obolibrary.org/obo/pbpko.owl" ; - _:b152 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/mco.obo" . - - "BioPortal Ontology Browser" ; - "BioPortal" . + + "http://purl.obolibrary.org/obo/mco.owl" . -_:b152 "Saurav Kumar" ; - "saurav.kumar@iispv.cat" . + + "MCRO"; + "active"; + ; + ; + "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers."; + "Model Card Report Ontology"; + ; + ; + "information technology"; + "https://github.com/UTHealth-Ontology/MCRO/issues"; + "http://purl.obolibrary.org/obo/mcro.owl"; + _:b244; + ; + . - - "http://purl.obolibrary.org/obo/pbpko.owl" . + + "http://purl.obolibrary.org/obo/mcro.owl" . - - "http://purl.obolibrary.org/obo/pbpko.obo" . + + "MF"; + "active"; + "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning."; + "Mental Functioning Ontology"; + ; + "health"; + "https://github.com/jannahastings/mental-functioning-ontology/issues"; + "http://purl.obolibrary.org/obo/mf.owl"; + _:b245; + ; + . - - "http://purl.obolibrary.org/obo/pbpko.json" . + + "http://purl.obolibrary.org/obo/mf.owl" . - - "PCL" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "Cell types that are provisionally defined by experimental techniques such as single cell or single nucleus transcriptomics rather than a straightforward & coherent set of properties." ; - "Provisional Cell Ontology" ; - ; - "phenotype" ; - "https://github.com/obophenotype/provisional_cell_ontology/issues" ; - "http://purl.obolibrary.org/obo/pcl.owl" ; - _:b153 ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - . + + ; + "MFMO"; + "inactive"; + ; + "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors."; + "Mammalian Feeding Muscle Ontology"; + ; + "anatomy and development"; + "https://github.com/RDruzinsky/feedontology/issues"; + "http://purl.obolibrary.org/obo/mfmo.owl"; + _:b105; + ; + . - - "SO" ; - "active" ; - "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases." ; - "Sequence types and features ontology" ; - ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/The-Sequence-Ontology/SO-Ontologies/issues" ; - "https://sourceforge.net/p/song/mailman/song-devel/" ; - "http://purl.obolibrary.org/obo/so.owl" ; - _:b154 ; - ; - ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/mfmo.owl" . -_:b153 "David Osumi-Sutherland" ; - "davidos@ebi.ac.uk" . + + ; + "inactive"; + "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes."; + "Medaka fish anatomy and development"; + "anatomy and development"; + _:b152; + . - - "http://purl.obolibrary.org/obo/pcl.owl" . + + "http://purl.obolibrary.org/obo/mfo.owl" . - - "http://purl.obolibrary.org/obo/pcl.obo" . + + "MFOEM"; + "active"; + "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings."; + "Emotion Ontology"; + ; + "health"; + "https://github.com/jannahastings/emotion-ontology/issues"; + "http://purl.obolibrary.org/obo/mfoem.owl"; + _:b246; + ; + . - - "http://purl.obolibrary.org/obo/pcl.json" . + + "http://purl.obolibrary.org/obo/mfoem.owl" . - - "http://purl.obolibrary.org/obo/pcl-base.owl" . + + "MFOMD"; + "active"; + "An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable"; + "Mental Disease Ontology"; + ; + "health"; + "https://github.com/jannahastings/mental-functioning-ontology/issues"; + "http://purl.obolibrary.org/obo/mfomd.owl"; + _:b247; + ; + . - - "http://purl.obolibrary.org/obo/pcl-base.obo" . + + "http://purl.obolibrary.org/obo/mfomd.owl" . - - "http://purl.obolibrary.org/obo/pcl-base.json" . + + "MI"; + "active"; + "A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions."; + "Molecular Interactions Controlled Vocabulary"; + ; + "investigations"; + "https://github.com/HUPO-PSI/psi-mi-CV/issues"; + "http://purl.obolibrary.org/obo/mi.owl"; + _:b248; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/pcl-full.owl" . + + "http://purl.obolibrary.org/obo/mi.obo" . - - "http://purl.obolibrary.org/obo/pcl-full.obo" . + + "http://purl.obolibrary.org/obo/mi.owl" . - - "http://purl.obolibrary.org/obo/pcl-full.json" . + + "MIAPA"; + "active"; + "An application ontology to formalize annotation of phylogenetic data."; + "MIAPA Ontology"; + ; + ; + "information"; + "https://github.com/evoinfo/miapa/issues"; + "http://groups.google.com/group/miapa-discuss"; + "http://purl.obolibrary.org/obo/miapa.owl"; + _:b250; + ; + . - - "http://purl.obolibrary.org/obo/pcl-simple.owl" . + + "http://purl.obolibrary.org/obo/miapa.owl" . - - "http://purl.obolibrary.org/obo/pcl-simple.obo" . + + "MICRO"; + "inactive"; + "An ontology of prokaryotic phenotypic and metabolic characters"; + "Ontology of Prokaryotic Phenotypic and Metabolic Characters"; + ; + "phenotype"; + "https://github.com/carrineblank/MicrO/issues"; + "http://purl.obolibrary.org/obo/micro.owl"; + _:b106; + ; + . - - "http://purl.obolibrary.org/obo/pcl-simple.json" . + + "http://purl.obolibrary.org/obo/micro.owl" . -_:b63 "Ramona Walls" ; - "rlwalls2008@gmail.com" . + + "inactive"; + "An application ontology for use with miRNA databases."; + "microRNA Ontology"; + ; + "chemistry and biochemistry"; + _:b153; + ; + . - - "http://purl.obolibrary.org/obo/pco.owl" . + + "http://purl.obolibrary.org/obo/mirnao.owl" . - - "PDRO" ; - "active" ; - "An ontology to describe entities related to prescription of drugs" ; - "The Prescription of Drugs Ontology" ; - ; - ; - "information" ; - "https://github.com/OpenLHS/PDRO/issues" ; - "http://purl.obolibrary.org/obo/pdro.owl" ; - _:b155 ; - ; - . + + ; + "inactive"; + "Application ontology for entities related to insecticide resistance in mosquitos"; + "Mosquito insecticide resistance"; + "environment"; + "http://purl.obolibrary.org/obo/miro.owl"; + _:b117; + ; + . - - "The Prescription of Drug Ontology 2.0 (PDRO): More Than the Sum of Its Parts" . + + "http://purl.obolibrary.org/obo/miro.obo" . -_:b155 "Paul Fabry" ; - "paul.fabry@usherbrooke.ca" . + + "http://purl.obolibrary.org/obo/miro.owl" . - - "http://purl.obolibrary.org/obo/pdro.owl" . + + "MMO"; + "active"; + "A representation of the variety of methods used to make clinical and phenotype measurements. "; + "Measurement method ontology"; + ; + ; + ; + "health"; + "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues"; + ; + "http://purl.obolibrary.org/obo/mmo.owl"; + _:b251; + ; + ; + ; + . - - "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." . + + "http://purl.obolibrary.org/obo/mmo.obo" . -_:b11 "Pankaj Jaiswal" ; - "jaiswalp@science.oregonstate.edu" . + + "http://purl.obolibrary.org/obo/mmo.owl" . - - "http://purl.obolibrary.org/obo/peco.owl" . + + "MmusDv"; + "active"; + "Life cycle stages for Mus Musculus"; + "Mouse Developmental Stages"; + ; + "anatomy and development"; + "https://github.com/obophenotype/developmental-stage-ontologies/issues"; + "http://purl.obolibrary.org/obo/mmusdv.owl"; + _:b252; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/peco.obo" . + + "http://purl.obolibrary.org/obo/mmusdv.obo" . - - "PHIPO" ; - "active" ; - ; - "PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions." ; - "Pathogen Host Interaction Phenotype Ontology" ; - ; - ; - "phenotype" ; - "https://github.com/PHI-base/phipo/issues" ; - "http://purl.obolibrary.org/obo/phipo.owl" ; - _:b156 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/mmusdv.owl" . - - "PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions" . + + "inactive"; + "A standardized description of a microarray experiment in support of MAGE v.1."; + "Microarray experimental conditions"; + "investigations"; + _:b154; + ; + ; + . -_:b156 "Alayne Cuzick" ; - "alayne.cuzick@rothamsted.ac.uk" . + + "http://purl.obolibrary.org/obo/mo.owl" . - - "http://purl.obolibrary.org/obo/phipo.owl" . + + "MOD"; + "active"; + "PSI-MOD is an ontology consisting of terms that describe protein chemical modifications"; + "Protein modification"; + ; + ; + "chemistry and biochemistry"; + "https://github.com/HUPO-PSI/psi-mod-CV/issues"; + "http://purl.obolibrary.org/obo/mod.owl"; + _:b253; + ; + ; + . - - "http://purl.obolibrary.org/obo/phipo.obo" . + + "PSI-MOD Ontology, OBO format"; + "PSI-MOD.obo"; + "http://purl.obolibrary.org/obo/mod.obo" . - - "PLANA" ; - "active" ; - ; - ; - "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes." ; - "planaria-ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/planaria-ontology/issues" ; - "http://purl.obolibrary.org/obo/plana.owl" ; - _:b157 ; - ; - ; - . + + "PSI-MOD Ontology, OWL format"; + "PSI-MOD.owl"; + "http://purl.obolibrary.org/obo/mod.owl" . - - "Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms" . + + ; + "MONDO"; + "active"; + "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology."; + "Mondo Disease Ontology"; + ; + ; + ; + "health"; + "https://github.com/monarch-initiative/mondo/issues"; + "https://groups.google.com/group/mondo-users"; + ; + "http://purl.obolibrary.org/obo/mondo.owl"; + _:b254; + ; + ; + ; + ; + ; + . -_:b157 "Sofia Robb" ; - "smr@stowers.org" . + + "Obographs serialization of mondo.owl."; + "Mondo JSON edition"; + "obo"; + "http://purl.obolibrary.org/obo/mondo.json" . - - "http://purl.obolibrary.org/obo/plana.owl" . + + "OBO serialization of mondo.owl."; + "Mondo OBO Format edition"; + "obo"; + "http://purl.obolibrary.org/obo/mondo.obo" . - - "http://purl.obolibrary.org/obo/plana.obo" . + + "Complete ontology with merged imports."; + "Mondo OWL edition"; + "owl-rdf/xml"; + "http://purl.obolibrary.org/obo/mondo.owl" . - - "PLANP" ; - "active" ; - ; - ; - ; - ; - "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea." ; - "Planarian Phenotype Ontology" ; - ; - "phenotype" ; - "https://github.com/obophenotype/planarian-phenotype-ontology/issues" ; - "http://purl.obolibrary.org/obo/planp.owl" ; - _:b158 ; - ; - ; - . + + "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves"; + "Mondo Base Release"; + "owl"; + "http://purl.obolibrary.org/obo/mondo/mondo-base.owl" . -_:b158 "Sofia Robb" ; - "smr@stowers.org" . + + "The main ontology classes and their hierarchies, without references to external terms."; + "Mondo Simple Release"; + "owl"; + "http://purl.obolibrary.org/obo/mondo/mondo-simple.owl" . - - "http://purl.obolibrary.org/obo/planp.owl" . + + "MOP"; + "active"; + "Processes at the molecular level"; + "Molecular Process Ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/rsc-ontologies/rxno/issues"; + "chemistry-ontologies@googlegroups.com"; + "http://purl.obolibrary.org/obo/mop.owl"; + _:b255; + ; + . - - "http://purl.obolibrary.org/obo/planp.obo" . + + "Molecular Process Ontology"; + "http://purl.obolibrary.org/obo/mop.owl" . - - "The plant ontology as a tool for comparative plant anatomy and genomic analyses." . + + ; + "MP"; + "active"; + "Standard terms for annotating mammalian phenotypic data."; + "Mammalian Phenotype Ontology"; + ; + ; + ; + ; + "phenotype"; + "https://github.com/mgijax/mammalian-phenotype-ontology/issues"; + "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors"; + ; + ; + ; + "http://purl.obolibrary.org/obo/mp.owl"; + _:b256; + ; + ; + ; + ; + ; + . - - "Planteome browser" ; - "Planteome" . + + "For a description of the format see https://github.com/geneontology/obographs."; + "MP (obographs JSON edition)"; + "http://purl.obolibrary.org/obo/mp.json"; + . -_:b12 "Pankaj Jaiswal" ; - "jaiswalp@science.oregonstate.edu" . + + "A direct translation of the MP (OWL edition) into OBO format."; + "MP (OBO edition)"; + "http://purl.obolibrary.org/obo/mp.obo"; + . - - "http://purl.obolibrary.org/obo/po.owl" . + + "The main ontology in OWL. Contains all MP terms and links to other OBO ontologies."; + "MP (OWL edition)"; + "http://purl.obolibrary.org/obo/mp.owl"; + . - - "http://purl.obolibrary.org/obo/po.obo" . + + "The main ontology plus axioms connecting to select external ontologies, excluding axioms from the the external ontologies themselves."; + "MP Base Module"; + "http://purl.obolibrary.org/obo/mp/mp-base.owl"; + . - - "Porifera" . + + ; + "MPATH"; + "active"; + "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes"; + "Mouse pathology ontology"; + ; + "health"; + "https://github.com/PaulNSchofield/mpath/issues"; + "http://purl.obolibrary.org/obo/mpath.owl"; + _:b257; + ; + . - - "The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology" . + + "http://purl.obolibrary.org/obo/mpath.owl" . -_:b84 "Bob Thacker" ; - "robert.thacker@stonybrook.edu" . + + "MPIO"; + "active"; + "An ontology of minimum information regarding potential drug-drug interaction information."; + "Minimum PDDI Information Ontology"; + ; + "health"; + "https://github.com/MPIO-Developers/MPIO/issues"; + "http://purl.obolibrary.org/obo/mpio.owl"; + _:b258; + ; + . - - "http://purl.obolibrary.org/obo/poro.owl" . + + "http://purl.obolibrary.org/obo/mpio.owl" . - - "http://purl.obolibrary.org/obo/poro.obo" . + + "MRO"; + "active"; + "An ontology for Major Histocompatibility Complex (MHC) restriction in experiments"; + "MHC Restriction Ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/IEDB/MRO/issues"; + "http://purl.obolibrary.org/obo/mro.owl"; + _:b259; + ; + . - - "PPO" ; - "active" ; - ; - "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales." ; - "Plant Phenology Ontology" ; - ; - "phenotype" ; - "https://github.com/PlantPhenoOntology/PPO/issues" ; - "ppo-discuss@googlegroups.com" ; - "http://purl.obolibrary.org/obo/ppo.owl" ; - _:b159 ; - ; - . + + "http://purl.obolibrary.org/obo/mro.owl" . -_:b159 "Ramona Walls" ; - "rlwalls2008@gmail.com" . + + "MS"; + "active"; + ; + ; + "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry."; + "Mass spectrometry ontology"; + ; + ; + "investigations"; + "https://github.com/HUPO-PSI/psi-ms-CV/issues"; + "psidev-ms-vocab@lists.sourceforge.net"; + "http://purl.obolibrary.org/obo/ms.owl"; + _:b3; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/ppo.owl" . + + "http://purl.obolibrary.org/obo/ms.obo" . - - "Protein Ontology (PRO): enhancing and scaling up the representation of protein entities" . + + "http://purl.obolibrary.org/obo/ms.owl" . - - "BioPortal Browser" ; - "BioPortal" . + + "NBO"; + "active"; + "An ontology of human and animal behaviours and behavioural phenotypes"; + "Neuro Behavior Ontology"; + ; + ; + "biological systems"; + "https://github.com/obo-behavior/behavior-ontology/issues"; + ; + "http://purl.obolibrary.org/obo/nbo.owl"; + _:b4; + ; + . - - "PRO Home" ; - "PRO" . + + "http://purl.obolibrary.org/obo/nbo.owl" . -_:b35 "Darren Natale" ; - "dan5@georgetown.edu" . + + "NCBITaxon"; + "active"; + "An ontology representation of the NCBI organismal taxonomy"; + "NCBI organismal classification"; + ; + "organisms"; + "https://github.com/obophenotype/ncbitaxon/issues"; + ; + "http://purl.obolibrary.org/obo/ncbitaxon.owl"; + _:b5; + ; + ; + ; + ; + ; + ; + . - - "PRO after reasoning has been applied, OWL format. Add '.gz' for compressed." ; - "pro_reasoned.owl" ; - "http://purl.obolibrary.org/obo/pr.owl" . + + "OBOGraphs JSON version of Main release"; + "http://purl.obolibrary.org/obo/ncbitaxon.json" . - - "PRO after reasoning has been applied, OBO format." ; - "pro_reasoned.obo" ; - "http://purl.obolibrary.org/obo/pr.obo" . + + "OBO Format version of Main release"; + "http://purl.obolibrary.org/obo/ncbitaxon.obo" . - - "PRO without reasoning applied, OWL format. Add '.gz' for compressed." ; - "pro_nonreasoned.owl" ; - "http://purl.obolibrary.org/obo/pr-asserted.owl" . + + "Main release"; + "http://purl.obolibrary.org/obo/ncbitaxon.owl" . - - "PRO without reasoning applied, OBO format." ; - "pro_nonreasoned.obo" ; - "http://purl.obolibrary.org/obo/pr-asserted.obo" . + + "taxslim disjointness axioms"; + "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl"; + . - - "PROCO" ; - "active" ; - ; - ; - ; - ; - ; - ; - "PROCO covers process chemistry, the chemical field concerned with scaling up laboratory syntheses to commercially viable processes." ; - "Process Chemistry Ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/proco-ontology/PROCO/issues" ; - "http://purl.obolibrary.org/obo/proco.owl" ; - _:b160 ; - ; - . + + "taxslim"; + "http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl"; + . - - "SBO" ; - "active" ; - "Terms commonly used in Systems Biology, and in particular in computational modeling." ; - "Systems Biology Ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/EBI-BioModels/SBO/issues" ; - "http://purl.obolibrary.org/obo/sbo.owl" ; - _:b161 ; - ; - . + + "NCIT"; + "active"; + "NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, findings and abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with OBO Library ontologies. NCIt OBO Edition releases should be considered experimental."; + "NCI Thesaurus OBO Edition"; + ; + "health"; + "https://github.com/ncit-obo-org/ncit-obo-edition/issues"; + "http://purl.obolibrary.org/obo/ncit.owl"; + _:b6; + ; + ; + . -_:b160 "Wes Schafer" ; - "wes_schafer@merck.com" . + + "NCIt OBO Edition OBO format"; + "http://purl.obolibrary.org/obo/ncit.obo" . - - "http://purl.obolibrary.org/obo/proco.owl" . + + "A direct transformation of the standard NCIt content using OBO-style term and ontology IRIs and annotation properties."; + "NCIt OBO Edition OWL format"; + "http://purl.obolibrary.org/obo/ncit.owl" . - - "PSDO" ; - "active" ; - ; - ; - ; - ; - "Ontology to reproducibly study visualizations of clinical performance" ; - "Performance Summary Display Ontology" ; - ; - "information" ; - "https://github.com/Display-Lab/psdo/issues" ; - "http://purl.obolibrary.org/obo/psdo.owl" ; - _:b162 ; - ; - . + + "NCRO"; + "active"; + "An ontology for non-coding RNA, both of biological origin, and engineered."; + "Non-Coding RNA Ontology"; + ; + "investigations"; + "https://github.com/OmniSearch/ncro/issues"; + "ncro-devel@googlegroups.com, ncro-discuss@googlegroups.com"; + "http://purl.obolibrary.org/obo/ncro.owl"; + _:b7; + ; + . -_:b162 "Zach Landis-Lewis" ; - "zachll@umich.edu" . + + "NCRO development version"; + "http://purl.obolibrary.org/obo/ncro/dev/ncro.owl" . - - "http://purl.obolibrary.org/obo/psdo.owl" . + + "NGBO"; + "active"; + "The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management."; + "Next Generation Biobanking Ontology"; + ; + "investigations"; + "https://github.com/Dalalghamdi/NGBO/issues"; + "http://purl.obolibrary.org/obo/ngbo.owl"; + _:b8; + ; + . - - "PSO" ; - "active" ; - ; - "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter." ; - "Plant Stress Ontology" ; - ; - ; - "agriculture" ; - "https://github.com/Planteome/plant-stress-ontology/issues" ; - "http://purl.obolibrary.org/obo/pso.owl" ; - _:b163 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/ngbo.owl" . -_:b163 "Laurel Cooper" ; - "cooperl@oregonstate.edu" . + + "inactive"; + "Neuronal cell types"; + "NIF Cell"; + "anatomy and development"; + _:b155; + . - - "http://purl.obolibrary.org/obo/pso.owl" . + + "inactive"; + "NIF Dysfunction"; + "health"; + _:b156; + . - - "http://purl.obolibrary.org/obo/pso.obo" . + + "inactive"; + "NIF Gross Anatomy"; + "anatomy and development"; + _:b158; + . - - "PW" ; - "active" ; - "A controlled vocabulary for annotating gene products to pathways." ; - "Pathway ontology" ; - ; - ; - ; - "biological systems" ; - "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/pw.owl" ; - _:b164 ; - ; - ; - ; - . + + "inactive"; + "Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation."; + "NMR-instrument specific component of metabolomics investigations"; + "investigations"; + _:b159; + ; + ; + . - - "The Rat Genome Database pathway portal." . + + "http://purl.obolibrary.org/obo/nmr.owl" . - - "The pathway ontology - updates and applications." . + + "NOMEN"; + "active"; + "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature."; + "NOMEN - A nomenclatural ontology for biological names"; + ; + "information"; + ; + "https://github.com/SpeciesFileGroup/nomen/issues"; + "https://groups.google.com/forum/#!forum/nomen-discuss"; + "http://purl.obolibrary.org/obo/nomen.owl"; + _:b9; + ; + . - - "RGD Ontology Browser" ; - "RGD" . + + "core ontology"; + "NOMEN"; + a ; + "http://purl.obolibrary.org/obo/nomen.owl" . -_:b164 "G. Thomas Hayman" ; - "gthayman@mcw.edu" . + + "OAE"; + "active"; + "A biomedical ontology in the domain of adverse events"; + "Ontology of Adverse Events"; + ; + "health"; + "https://github.com/OAE-ontology/OAE/issues"; + "http://purl.obolibrary.org/obo/oae.owl"; + _:b10; + ; + . - - "http://purl.obolibrary.org/obo/pw.owl" . + + "http://purl.obolibrary.org/obo/oae.owl" . - - "http://purl.obolibrary.org/obo/pw.obo" . + + "OARCS"; + "active"; + "OArCS is an ontology describing the Arthropod ciruclatory system."; + "Ontology of Arthropod Circulatory Systems"; + ; + "anatomy and development"; + "https://github.com/aszool/oarcs/issues"; + "http://purl.obolibrary.org/obo/oarcs.owl"; + _:b11; + ; + . - - "RBO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments." ; - "Radiation Biology Ontology" ; - ; - "environment" ; - "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues" ; - "http://purl.obolibrary.org/obo/rbo.owl" ; - _:b165 ; - ; - ; - ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/oarcs.owl" . -_:b165 "Daniel C. Berrios" ; - "daniel.c.berrios@nasa.gov" . + + "OBA"; + "active"; + "A collection of biological attributes (traits) covering all kingdoms of life."; + "Ontology of Biological Attributes"; + ; + ; + "phenotype"; + "https://github.com/obophenotype/bio-attribute-ontology/issues"; + "http://purl.obolibrary.org/obo/oba.owl"; + _:b12; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/rbo.owl" . + + "http://purl.obolibrary.org/obo/oba.obo" . - - "http://purl.obolibrary.org/obo/rbo.obo" . + + "http://purl.obolibrary.org/obo/oba.owl" . - - "http://purl.obolibrary.org/obo/rbo.json" . + + "http://purl.obolibrary.org/obo/oba/subsets/oba-basic.obo" . - - "http://purl.obolibrary.org/obo/rbo/rbo-base.owl" . + + "OBCS"; + "active"; + "A biomedical ontology in the domain of biological and clinical statistics."; + "Ontology of Biological and Clinical Statistics"; + ; + "information technology"; + "https://github.com/obcs/obcs/issues"; + "http://purl.obolibrary.org/obo/obcs.owl"; + _:b14; + ; + . - - "http://purl.obolibrary.org/obo/rbo/rbo-base.obo" . + + "http://purl.obolibrary.org/obo/obcs.owl" . - - "http://purl.obolibrary.org/obo/rbo/rbo-base.json" . + + "OBI"; + "active"; + "An integrated ontology for the description of life-science and clinical investigations"; + "Ontology for Biomedical Investigations"; + ; + ; + "investigations"; + "http://purl.obolibrary.org/obo/obi/tracker"; + "http://groups.google.com/group/obi-users"; + ; + "http://purl.obolibrary.org/obo/obi.owl"; + _:b15; + ; + ; + ; + ; + . -_:b13 "Chris Mungall" ; - "cjmungall@lbl.gov" . + + "The OBO-format version of OBI"; + "OBI in OBO"; + "http://purl.obolibrary.org/obo/obi.obo" . - - "Canonical edition" ; - "Relation Ontology" ; - "http://purl.obolibrary.org/obo/ro.owl" . + + "The full version of OBI in OWL format"; + "OBI"; + "http://purl.obolibrary.org/obo/obi.owl" . - - "The obo edition is less expressive than the OWL, and has imports merged in" ; - "Relation Ontology in obo format" ; - "http://purl.obolibrary.org/obo/ro.obo" . + + "Base module for OBI"; + "OBI Base module"; + "http://purl.obolibrary.org/obo/obi/obi-base.owl" . - - "Relation Ontology in obojson format" ; - "http://purl.obolibrary.org/obo/ro.json" . + + "A collection of important high-level terms and their relations from OBI and other ontologies"; + "OBI Core"; + "http://purl.obolibrary.org/obo/obi/obi_core.owl" . - - "Minimal subset intended to work with BFO-classes" ; - "RO Core relations" ; - "http://purl.obolibrary.org/obo/ro/core.owl" ; - . + + "OBIB"; + "active"; + "An ontology built for annotation and modeling of biobank repository and biobanking administration"; + "Ontology for Biobanking"; + ; + "investigations"; + "https://github.com/biobanking/biobanking/issues"; + "http://purl.obolibrary.org/obo/obib.owl"; + _:b16; + ; + . - - "Axioms defined within RO and to be used in imports for other ontologies" ; - "RO base ontology" ; - "http://purl.obolibrary.org/obo/ro/ro-base.owl" ; - . + + "http://purl.obolibrary.org/obo/obib.owl" . - - "For use in ecology and environmental science" ; - "Interaction relations" ; - "http://purl.obolibrary.org/obo/ro/subsets/ro-interaction.owl" . + + "inactive"; + "OBO relationship types (legacy)"; + "upper"; + _:b160; + . - - "Ecology subset" ; - "http://purl.obolibrary.org/obo/ro/subsets/ro-eco.owl" . + + "OCCO"; + "active"; + "An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau of Labor Statistics Standard Occupational Classification (US SOC), the International Standard Classification of Occupations (ISCO), the UK National Statistics Standard Occupational Classification (UK SOC), and the European Skills, Competences, Qualifications and Occupations (ESCO) of the European Union."; + "Occupation Ontology"; + ; + "information"; + "https://github.com/Occupation-Ontology/OccO/issues"; + ; + "http://purl.obolibrary.org/obo/occo.owl"; + _:b17; + ; + . - - "For use in neuroscience" ; - "Neuroscience subset" ; - "http://purl.obolibrary.org/obo/ro/subsets/ro-neuro.owl" ; - . + + "http://purl.obolibrary.org/obo/occo.owl" . - - "RS" ; - "active" ; - ; - "Ontology of rat strains" ; - "Rat Strain Ontology" ; - ; - ; - "organisms" ; - "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues" ; - ; - "http://purl.obolibrary.org/obo/rs.owl" ; - _:b166 ; - ; - ; - ; - . + + "OGG"; + "active"; + "A formal ontology of genes and genomes of biological organisms."; + "The Ontology of Genes and Genomes"; + ; + "biological systems"; + "https://bitbucket.org/hegroup/ogg/issues/"; + "http://purl.obolibrary.org/obo/ogg.owl"; + _:b18; + ; + . - - "Rattus" . + + "http://purl.obolibrary.org/obo/ogg.owl" . - - "Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD." . + + "inactive"; + "An ontology that formalizes the genomic element by defining an upper class genetic interval"; + "Ontology for genetic interval"; + "chemistry and biochemistry"; + "https://code.google.com/p/ontology-for-genetic-interval/issues/list"; + _:b161; + ; + . - - "RGD Ontology Browser" ; - "RGD" . + + "http://purl.obolibrary.org/obo/ogi.owl" . -_:b166 "Shur-Jen Wang" ; - "sjwang@mcw.edu" . + + ; + "OGMS"; + "active"; + "An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities"; + "Ontology for General Medical Science"; + ; + ; + ; + "health"; + "https://github.com/OGMS/ogms/issues"; + "http://purl.obolibrary.org/obo/ogms.owl"; + _:b19; + ; + . - - "http://purl.obolibrary.org/obo/rs.owl" . + + "http://purl.obolibrary.org/obo/ogms.owl" . - - "http://purl.obolibrary.org/obo/rs.obo" . + + "OGSF"; + "inactive"; + "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process."; + "Ontology of Genetic Susceptibility Factor"; + ; + "investigations"; + "https://github.com/linikujp/OGSF/issues"; + "http://purl.obolibrary.org/obo/ogsf.owl"; + _:b107; + ; + . - - "RXNO" ; - "active" ; - "Connects organic name reactions to their roles in an organic synthesis and to processes in MOP" ; - "Name Reaction Ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/rsc-ontologies/rxno/issues" ; - "chemistry-ontologies@googlegroups.com" ; - "http://purl.obolibrary.org/obo/rxno.owl" ; - _:b167 ; - ; - . + + "http://purl.obolibrary.org/obo/ogsf.owl" . -_:b167 "Colin Batchelor" ; - "batchelorc@rsc.org" . + + "OHD"; + "active"; + "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies."; + "Oral Health and Disease Ontology"; + ; + ; + "health"; + "https://github.com/oral-health-and-disease-ontologies/ohd-ontology/issues"; + "http://purl.obolibrary.org/obo/ohd.owl"; + _:b20; + ; + . - - "Name Reaction Ontology" ; - "http://purl.obolibrary.org/obo/rxno.owl" . + + "Oral Health and Disease Ontology"; + "http://purl.obolibrary.org/obo/ohd.owl" . - - "SEPIO" ; - "active" ; - "An ontology for representing the provenance of scientific claims and the evidence that supports them." ; - "Scientific Evidence and Provenance Information Ontology" ; - ; - "investigations" ; - "https://github.com/monarch-initiative/SEPIO-ontology/issues" ; - "http://purl.obolibrary.org/obo/sepio.owl" ; - _:b168 ; - ; - . + + "OHMI"; + "active"; + "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions."; + "Ontology of Host-Microbiome Interactions"; + ; + "organisms"; + "https://github.com/ohmi-ontology/ohmi/issues"; + "http://groups.google.com/group/ohmi-discuss"; + "http://purl.obolibrary.org/obo/ohmi.owl"; + _:b21; + ; + . -_:b168 "Matthew Brush" ; - "mhb120@gmail.com" . + + "http://purl.obolibrary.org/obo/ohmi.owl" . - - "SEPIO" ; - "http://purl.obolibrary.org/obo/sepio.owl" . + + "OHPI"; + "active"; + "OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is developed to represent manually curated HPI knowledge available in the PHIDIAS resource."; + "Ontology of Host Pathogen Interactions"; + ; + ; + "biological systems"; + "https://github.com/OHPI/ohpi/issues"; + "http://groups.google.com/group/ohpi-discuss"; + "http://purl.obolibrary.org/obo/ohpi.owl"; + _:b22; + ; + . - - "SLSO" ; - "active" ; - "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data." ; - "Space Life Sciences Ontology" ; - ; - "investigations" ; - "https://github.com/nasa/LSDAO/issues" ; - ; - "http://purl.obolibrary.org/obo/slso.owl" ; - _:b169 ; - ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/ohpi.owl" . - - "BioPortal Ontology Browser" ; - "BioPortal" . + + "OlatDv"; + "inactive"; + "Life cycle stages for Medaka"; + "Medaka Developmental Stages"; + ; + "anatomy and development"; + "https://github.com/obophenotype/developmental-stage-ontologies/issues"; + "http://purl.obolibrary.org/obo/olatdv.owl"; + _:b108; + ; + ; + ; + . -_:b169 "Dan Berrios" ; - "daniel.c.berrios@nasa.gov" . + + "http://purl.obolibrary.org/obo/olatdv.obo" . - - "http://purl.obolibrary.org/obo/slso.owl" . + + "http://purl.obolibrary.org/obo/olatdv.owl" . - - "http://purl.obolibrary.org/obo/slso.obo" . + + "inactive"; + "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)"; + "Ontologized MIABIS"; + ; + "health"; + "https://github.com/OMIABIS/omiabis-dev/issues"; + _:b162; + ; + . - - "http://purl.obolibrary.org/obo/slso.json" . + + "http://purl.obolibrary.org/obo/omiabis.owl" . - - "Includes axioms linking to other ontologies, but no imports of those ontologies" ; - "http://purl.obolibrary.org/obo/slso-base.owl" . + + "OMIT"; + "active"; + "Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain"; + "Ontology for MIRNA Target"; + ; + "chemistry and biochemistry"; + "https://github.com/OmniSearch/omit/issues"; + "http://purl.obolibrary.org/obo/omit.owl"; + _:b23; + ; + ; + . - - "The Sequence Ontology: a tool for the unification of genome annotations." . + + "http://purl.obolibrary.org/obo/omit.owl" . - - "Evolution of the Sequence Ontology terms and relationships." . + + "OMO"; + "active"; + "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)."; + "OBO Metadata Ontology"; + ; + "information"; + "https://github.com/information-artifact-ontology/ontology-metadata/issues"; + "http://purl.obolibrary.org/obo/omo.owl"; + _:b25; + ; + . -_:b154 "Karen Eilbeck" ; - "keilbeck@genetics.utah.edu" . + + "http://purl.obolibrary.org/obo/omo.owl" . - - "Main SO OWL release" ; - "http://purl.obolibrary.org/obo/so.owl" . + + "OMP"; + "active"; + "An ontology of phenotypes covering microbes"; + "Ontology of Microbial Phenotypes"; + ; + ; + "phenotype"; + "https://github.com/microbialphenotypes/OMP-ontology/issues"; + "http://purl.obolibrary.org/obo/omp.owl"; + _:b26; + ; + ; + . - - "Main SO release in OBO Format" ; - "http://purl.obolibrary.org/obo/so.obo" . + + "http://purl.obolibrary.org/obo/omp.obo" . - - "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" ; - "Sequence Ontology Feature Annotation (SOFA) subset (OWL)" ; - "http://purl.obolibrary.org/obo/so/subsets/SOFA.owl" . + + "http://purl.obolibrary.org/obo/omp.owl" . - - "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3" ; - "Sequence Ontology Feature Annotation (SOFA) subset (OBO Format)" ; - "http://purl.obolibrary.org/obo/so/subsets/SOFA.obo" . + + ; + "OMRSE"; + "active"; + "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations."; + "Ontology for Modeling and Representation of Social Entities"; + ; + ; + "health"; + "https://github.com/mcwdsi/OMRSE/issues"; + "http://purl.obolibrary.org/obo/omrse.owl"; + _:b27; + ; + . - - "SPD" ; - "active" ; - ; - "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)." ; - "Spider Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/spider-ontology/issues" ; - "http://purl.obolibrary.org/obo/spd.owl" ; - _:b170 ; - ; - . + + "http://purl.obolibrary.org/obo/omrse.owl" . - - "spiders" . + + "ONE"; + "active"; + ; + ; + ; + "An ontology to standardize research output of nutritional epidemiologic studies."; + "Ontology for Nutritional Epidemiology"; + ; + "diet, metabolomics, and nutrition"; + "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies/issues"; + "http://purl.obolibrary.org/obo/one.owl"; + _:b28; + ; + ; + . - - "The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data" . + + "http://purl.obolibrary.org/obo/one.owl" . -_:b170 "Martin Ramirez" ; - "ramirez@macn.gov.ar" . + + "ONS"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + "An ontology for description of concepts in the nutritional studies domain."; + "Ontology for Nutritional Studies"; + ; + ; + "diet, metabolomics, and nutrition"; + "https://github.com/enpadasi/Ontology-for-Nutritional-Studies/issues"; + "http://purl.obolibrary.org/obo/ons.owl"; + _:b29; + ; + ; + . - - "http://purl.obolibrary.org/obo/spd.owl" . + + "ONS latest release"; + "http://purl.obolibrary.org/obo/ons.owl" . - - "Experiment design driven FAIRification of omics data matrices, an exemplar" . + + "ONTOAVIDA"; + "active"; + ; + ; + ; + ; + ; + "OntoAvida develops an integrated vocabulary for the description of the most widely-used computational approach for studying evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment)."; + "OntoAvida: ontology for Avida digital evolution platform"; + ; + ; + "simulation"; + "https://gitlab.com/fortunalab/ontoavida/-/issues"; + ; + "http://purl.obolibrary.org/obo/ontoavida.owl"; + _:b30; + ; + ; + . - - "Semantic concept schema of the linear mixed model of experimental observations" . + + "Equivalent to ontoavida.owl, in obo format"; + "OBO"; + "http://purl.obolibrary.org/obo/ontoavida.obo"; + . -_:b146 "Philippe Rocca-Serra" ; - "proccaserra@gmail.com" . + + "The main ontology in OWL"; + "OWL"; + "http://purl.obolibrary.org/obo/ontoavida.owl"; + . - - "http://purl.obolibrary.org/obo/stato.owl" . + + "ONTONEO"; + "active"; + "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby."; + "Obstetric and Neonatal Ontology"; + ; + ; + ; + "health"; + "https://github.com/ontoneo-project/Ontoneo/issues"; + "http://groups.google.com/group/ontoneo-discuss"; + ; + ; + "http://purl.obolibrary.org/obo/ontoneo.owl"; + _:b31; + ; + . - - "The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation" . + + "The full version of ONTONEO in OWL format"; + "ONTONEO"; + "http://purl.obolibrary.org/obo/ontoneo.owl" . -_:b115 "Allyson Lister" ; - "allyson.lister@oerc.ox.ac.uk" . + + "OOSTT"; + "active"; + "An ontology built for representating the organizational components of trauma centers and trauma systems."; + "Ontology of Organizational Structures of Trauma centers and Trauma systems"; + ; + "health"; + "https://github.com/OOSTT/OOSTT/issues"; + "http://purl.obolibrary.org/obo/oostt.owl"; + _:b32; + ; + . - - "http://purl.obolibrary.org/obo/swo.owl" . + + "http://purl.obolibrary.org/obo/oostt.owl" . - - "http://purl.obolibrary.org/obo/swo.json" . + + "OPL"; + "active"; + "A reference ontology for parasite life cycle stages."; + "Ontology for Parasite LifeCycle"; + ; + "organisms"; + "https://github.com/OPL-ontology/OPL/issues"; + "http://purl.obolibrary.org/obo/opl.owl"; + _:b33; + ; + . - - "SYMP" ; - "active" ; - ; - "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease." ; - "Symptom Ontology" ; - ; - ; - ; - "health" ; - "https://github.com/DiseaseOntology/SymptomOntology/issues" ; - "http://purl.obolibrary.org/obo/symp.owl" ; - _:b171 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/opl.owl" . - - "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database" . + + "OPMI"; + "active"; + "The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relations associated with precision medicine and related investigations at different conditions."; + "Ontology of Precision Medicine and Investigation"; + ; + "investigations"; + "https://github.com/OPMI/opmi/issues"; + "http://groups.google.com/group/opmi-discuss"; + "http://purl.obolibrary.org/obo/opmi.owl"; + _:b34; + ; + . -_:b171 "Lynn Schriml" ; - "lynn.schriml@gmail.com" . + + "http://purl.obolibrary.org/obo/opmi.owl" . - - "http://purl.obolibrary.org/obo/symp.owl" . + + "ORNASEQ"; + "active"; + "An application ontology designed to annotate next-generation sequencing experiments performed on RNA."; + "Ontology of RNA Sequencing"; + ; + "investigations"; + "https://github.com/safisher/ornaseq/issues"; + "http://purl.obolibrary.org/obo/ornaseq.owl"; + _:b36; + ; + . - - "http://purl.obolibrary.org/obo/symp.obo" . + + "http://purl.obolibrary.org/obo/ornaseq.owl" . - - "T4FS" ; - "active" ; - "A terminology for the skills necessary to make data FAIR and to keep it FAIR." ; - "terms4FAIRskills" ; - ; - ; - "information" ; - "https://github.com/terms4fairskills/FAIRterminology/issues" ; - "http://purl.obolibrary.org/obo/t4fs.owl" ; - _:b172 ; - ; - ; - ; - ; - ; - ; - . + + "OVAE"; + "active"; + "A biomedical ontology in the domain of vaccine adverse events."; + "Ontology of Vaccine Adverse Events"; + ; + "health"; + "https://github.com/OVAE-Ontology/ovae/issues"; + "http://purl.obolibrary.org/obo/ovae.owl"; + _:b37; + ; + . - - "EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report" . + + "http://purl.obolibrary.org/obo/ovae.owl" . -_:b172 "Allyson Lister" ; - "allyson.lister@oerc.ox.ac.uk" . + + ; + "inactive"; + "Plant Anatomy Ontology"; + "anatomy and development"; + _:b163; + . - - "http://purl.obolibrary.org/obo/t4fs.owl" . + + "PATO"; + "active"; + "An ontology of phenotypic qualities (properties, attributes or characteristics)"; + "Phenotype And Trait Ontology"; + ; + ; + ; + "phenotype"; + "https://github.com/pato-ontology/pato/issues"; + ; + "http://purl.obolibrary.org/obo/pato.owl"; + _:b38; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/t4fs.obo" . + + "http://purl.obolibrary.org/obo/pato.json" . - - "http://purl.obolibrary.org/obo/t4fs.json" . + + "http://purl.obolibrary.org/obo/pato.obo" . - - "This community view of T4FS makes the ontology available in OWL without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." ; - "http://purl.obolibrary.org/obo/t4fs-community.owl" . + + "http://purl.obolibrary.org/obo/pato.owl" . - - "This community view of T4FS makes the ontology available in OBO format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." ; - "http://purl.obolibrary.org/obo/t4fs-community.obo" . + + "Includes axioms linking to other ontologies, but no imports of those ontologies"; + "http://purl.obolibrary.org/obo/pato/pato-base.owl" . - - "This community view of T4FS makes the ontology available in JSON format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy." ; - "http://purl.obolibrary.org/obo/t4fs-community.json" . + + "PBPKO"; + "active"; + "An ontology for modeling and understanding of pharmacokinetics in biological systems."; + "Physiologically-Based Pharmacokinetic Ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/InSilicoVida-Research-Lab/pbpko/issues"; + ; + "http://purl.obolibrary.org/obo/pbpko.owl"; + _:b39; + ; + ; + ; + . - - "TAXRANK" ; - "active" ; - "A vocabulary of taxonomic ranks (species, family, phylum, etc)" ; - "Taxonomic rank vocabulary" ; - ; - ; - "organisms" ; - "https://github.com/phenoscape/taxrank/issues" ; - "http://purl.obolibrary.org/obo/taxrank.owl" ; - _:b173 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/pbpko.json" . - - "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes" . + + "http://purl.obolibrary.org/obo/pbpko.obo" . -_:b173 "Jim Balhoff" ; - "balhoff@renci.org" . + + "http://purl.obolibrary.org/obo/pbpko.owl" . - - "http://purl.obolibrary.org/obo/taxrank.owl" . + + "PCL"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "Cell types that are provisionally defined by experimental techniques such as single cell or single nucleus transcriptomics rather than a straightforward & coherent set of properties."; + "Provisional Cell Ontology"; + ; + "phenotype"; + "https://github.com/obophenotype/provisional_cell_ontology/issues"; + "http://purl.obolibrary.org/obo/pcl.owl"; + _:b40; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/taxrank.obo" . + + "http://purl.obolibrary.org/obo/pcl-base.json" . - - "Planteome browser" ; - "Planteome" . + + "http://purl.obolibrary.org/obo/pcl-base.obo" . -_:b14 "Pankaj Jaiswal" ; - "jaiswalp@science.oregonstate.edu" . + + "http://purl.obolibrary.org/obo/pcl-base.owl" . - - "http://purl.obolibrary.org/obo/to.owl" . + + "http://purl.obolibrary.org/obo/pcl-full.json" . - - "http://purl.obolibrary.org/obo/to.obo" . + + "http://purl.obolibrary.org/obo/pcl-full.obo" . - - "TRANS" ; - "active" ; - "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host." ; - "Pathogen Transmission Ontology" ; - ; - ; - ; - "health" ; - "https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues" ; - "http://purl.obolibrary.org/obo/trans.owl" ; - _:b174 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/pcl-full.owl" . -_:b174 "Lynn Schriml" ; - "lynn.schriml@gmail.com" . + + "http://purl.obolibrary.org/obo/pcl-simple.json" . - - "http://purl.obolibrary.org/obo/trans.owl" . + + "http://purl.obolibrary.org/obo/pcl-simple.obo" . - - "http://purl.obolibrary.org/obo/trans.obo" . + + "http://purl.obolibrary.org/obo/pcl-simple.owl" . - - "TTO" ; - "active" ; - ; - "An ontology covering the taxonomy of teleosts (bony fish)" ; - "Teleost taxonomy ontology" ; - ; - ; - "organisms" ; - "https://github.com/phenoscape/teleost-taxonomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/tto.owl" ; - _:b175 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/pcl.json" . - - "Teleostei" . + + "http://purl.obolibrary.org/obo/pcl.obo" . - - "The Teleost Taxonomy Ontology" . + + "http://purl.obolibrary.org/obo/pcl.owl" . -_:b175 "Jim Balhoff" ; - "balhoff@renci.org" . + + "PCO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + "An ontology about groups of interacting organisms such as populations and communities"; + "Population and Community Ontology"; + ; + "environment"; + "https://github.com/PopulationAndCommunityOntology/pco/issues"; + "http://purl.obolibrary.org/obo/pco.owl"; + _:b41; + ; + . - - "http://purl.obolibrary.org/obo/tto.obo" . + + "http://purl.obolibrary.org/obo/pco.owl" . - - "http://purl.obolibrary.org/obo/tto.owl" . + + ; + "inactive"; + "Platynereis stage ontology"; + "anatomy and development"; + _:b164; + . - - "TXPO" ; - "active" ; - "TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity." ; - "Toxic Process Ontology" ; - ; - ; - "chemistry and biochemistry" ; - "https://github.com/txpo-ontology/TXPO/issues" ; - ; - ; - "http://purl.obolibrary.org/obo/txpo.owl" ; - _:b176 ; - ; - . + + "PDRO"; + "active"; + "An ontology to describe entities related to prescription of drugs"; + "The Prescription of Drugs Ontology"; + ; + ; + "information"; + "https://github.com/OpenLHS/PDRO/issues"; + "http://purl.obolibrary.org/obo/pdro.owl"; + _:b42; + ; + . - - "Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management" . + + "http://purl.obolibrary.org/obo/pdro.owl" . - - "BioPortal Browser" ; - "BioPortal" . + + "PdumDv"; + "inactive"; + "Life cycle stages for Platynereis dumerilii"; + "Platynereis Developmental Stages"; + ; + "anatomy and development"; + "https://github.com/obophenotype/developmental-stage-ontologies/issues"; + "http://purl.obolibrary.org/obo/pdumdv.owl"; + _:b109; + ; + ; + ; + . - - "TOXPILOT" ; - "TOXPILOT" . + + "http://purl.obolibrary.org/obo/pdumdv.obo" . -_:b176 "Yuki Yamagata" ; - "yuki.yamagata@riken.jp" . + + "http://purl.obolibrary.org/obo/pdumdv.owl" . - - "http://purl.obolibrary.org/obo/txpo.owl" . + + "PECO"; + "active"; + "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments."; + "Plant Experimental Conditions Ontology"; + ; + ; + "investigations"; + "https://github.com/Planteome/plant-experimental-conditions-ontology/issues"; + "http://purl.obolibrary.org/obo/peco.owl"; + _:b43; + ; + ; + ; + . - - "Uberon, an integrative multi-species anatomy ontology" . + + "http://purl.obolibrary.org/obo/peco.obo" . - - "Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon" . + + "http://purl.obolibrary.org/obo/peco.owl" . - - "NIH R24-OD011883" . + + ; + "inactive"; + "Plant Growth and Development Stage"; + "anatomy and development"; + _:b165; + . - - "NIH R01-HG004838" . + + "PHIPO"; + "active"; + ; + "PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions."; + "Pathogen Host Interaction Phenotype Ontology"; + ; + ; + "phenotype"; + "https://github.com/PHI-base/phipo/issues"; + "http://purl.obolibrary.org/obo/phipo.owl"; + _:b44; + ; + ; + . - - "NIH P41-HG002273" . + + "http://purl.obolibrary.org/obo/phipo.obo" . - - "NSF DEB-0956049" . + + "http://purl.obolibrary.org/obo/phipo.owl" . - - "Gene Ontology AmiGO 2 Browser" ; - "RGD" . + + "PLANA"; + "active"; + ; + ; + "PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes."; + "planaria-ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/planaria-ontology/issues"; + "http://purl.obolibrary.org/obo/plana.owl"; + _:b45; + ; + ; + . - - "Gene Ontology AmiGO 2 Browser" ; - "AmiGO (SUBSET)" . + + "http://purl.obolibrary.org/obo/plana.obo" . - - "Bgee gene expression queries" ; - "Bgee (gene expression)" . + + "http://purl.obolibrary.org/obo/plana.owl" . - - "FANTOM5 Data Portal" ; - "FANTOM5" . + + "PLANP"; + "active"; + ; + ; + ; + ; + "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea."; + "Planarian Phenotype Ontology"; + ; + "phenotype"; + "https://github.com/obophenotype/planarian-phenotype-ontology/issues"; + "http://purl.obolibrary.org/obo/planp.owl"; + _:b47; + ; + ; + . - - "INCF KnowledgeSpace Portal" ; - "KnowledgeSpace" . + + "http://purl.obolibrary.org/obo/planp.obo" . -_:b20 "Chris Mungall" ; - "cjmungall@lbl.gov" . + + "http://purl.obolibrary.org/obo/planp.owl" . - - "core ontology" ; - "Uberon" ; - ; - "http://purl.obolibrary.org/obo/uberon.owl" . + + "inactive"; + "Plasmodium life cycle"; + "anatomy and development"; + _:b166; + . - - "Axioms defined within Uberon and to be used in imports for other ontologies" ; - "Uberon base ontology" ; - "http://purl.obolibrary.org/obo/uberon/uberon-base.owl" ; - . + + ; + "PO"; + "active"; + "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data."; + "Plant Ontology"; + ; + ; + ; + "anatomy and development"; + "https://github.com/Planteome/plant-ontology/issues"; + ; + "http://purl.obolibrary.org/obo/po.owl"; + _:b48; + ; + ; + ; + ; + . - - "Uberon edition that excludes external ontologies and most relations" ; - "Uberon basic" ; - "obo" ; - ; - "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo" . + + "http://purl.obolibrary.org/obo/po.obo" . - - "Metazoa"^^ ; - "Uberon plus all metazoan ontologies" ; - "Uberon collected metazoan ontology" ; - ; - "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl" ; - . + + "http://purl.obolibrary.org/obo/po.owl" . - - "Metazoa"^^ ; - "Uberon and all metazoan ontologies with redundant species-specific terms removed" ; - "Uberon composite metazoan ontology" ; - ; - "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl" ; - . + + ; + "PORO"; + "active"; + ; + ; + "An ontology covering the anatomy of the taxon Porifera (sponges)"; + "Porifera Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/porifera-ontology/issues"; + "http://purl.obolibrary.org/obo/poro.owl"; + _:b49; + ; + ; + . - - "Vertebrata"^^ ; - "Uberon composite vertebrate ontology" ; - ; - "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl" ; - . + + "http://purl.obolibrary.org/obo/poro.obo" . - - "The Units Ontology: a tool for integrating units of measurement in science" . + + "http://purl.obolibrary.org/obo/poro.owl" . -_:b15 "George Gkoutos" ; - "g.gkoutos@gmail.com" . + + ; + "PPO"; + "active"; + "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales."; + "Plant Phenology Ontology"; + ; + "phenotype"; + "https://github.com/PlantPhenoOntology/PPO/issues"; + "ppo-discuss@googlegroups.com"; + "http://purl.obolibrary.org/obo/ppo.owl"; + _:b50; + ; + . - - "http://purl.obolibrary.org/obo/uo.owl" . + + "http://purl.obolibrary.org/obo/ppo.owl" . - - "http://purl.obolibrary.org/obo/uo.obo" . + + "PR"; + "active"; + "An ontological representation of protein-related entities"; + "PRotein Ontology (PRO)"; + ; + ; + "chemistry and biochemistry"; + "https://github.com/PROconsortium/PRoteinOntology/issues"; + ; + ; + "http://purl.obolibrary.org/obo/pr.owl"; + _:b51; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/uo.json" . + + "PRO without reasoning applied, OBO format."; + "pro_nonreasoned.obo"; + "http://purl.obolibrary.org/obo/pr-asserted.obo" . - - "UPHENO" ; - "active" ; - "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology." ; - "Unified Phenotype Ontology (uPheno)" ; - ; - ; - ; - ; - "phenotype" ; - "https://github.com/obophenotype/upheno/issues" ; - "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors" ; - "http://purl.obolibrary.org/obo/upheno.owl" ; - _:b177 ; - ; - ; - ; - . + + "PRO without reasoning applied, OWL format. Add '.gz' for compressed."; + "pro_nonreasoned.owl"; + "http://purl.obolibrary.org/obo/pr-asserted.owl" . - - "The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics" . + + "PRO after reasoning has been applied, OBO format."; + "pro_reasoned.obo"; + "http://purl.obolibrary.org/obo/pr.obo" . - - "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species" . + + "PRO after reasoning has been applied, OWL format. Add '.gz' for compressed."; + "pro_reasoned.owl"; + "http://purl.obolibrary.org/obo/pr.owl" . - - "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition" . + + "PROCO"; + "active"; + ; + ; + ; + ; + ; + ; + "PROCO covers process chemistry, the chemical field concerned with scaling up laboratory syntheses to commercially viable processes."; + "Process Chemistry Ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/proco-ontology/PROCO/issues"; + "http://purl.obolibrary.org/obo/proco.owl"; + _:b52; + ; + . -_:b177 "James McLaughlin" ; - "jmcl@ebi.ac.uk" . + + "http://purl.obolibrary.org/obo/proco.owl" . - - "uPheno 1 is no longer actively maintained, please start using uPheno 2 (see below)." ; - "uPheno 1 (inactive)" ; - "http://purl.obolibrary.org/obo/upheno.owl" ; - . + + "inactive"; + "Proteomics data and process provenance"; + "chemistry and biochemistry"; + _:b167; + . - - "No longer actively maintained." ; - "uPheno MP-HP equivalence axioms" ; - "http://purl.obolibrary.org/obo/upheno/mp-hp-view.owl" ; - . + + "PSDO"; + "active"; + ; + ; + ; + ; + "Ontology to reproducibly study visualizations of clinical performance"; + "Performance Summary Display Ontology"; + ; + "information"; + "https://github.com/Display-Lab/psdo/issues"; + "http://purl.obolibrary.org/obo/psdo.owl"; + _:b53; + ; + . - - "The new version of uPheno, along with species independent phenotypes and additional phenotype relations. The ontology is still in Beta status, but we recommend users to migrate their infrastructures to uPheno 2 as uPheno 1 is no longer actively maintained." ; - "uPheno 2" ; - "http://purl.obolibrary.org/obo/upheno/v2/upheno.owl" ; - . + + "http://purl.obolibrary.org/obo/psdo.owl" . - - "VBO" ; - "active" ; - ; - "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names." ; - "Vertebrate Breed Ontology" ; - ; - ; - "organisms" ; - "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues" ; - "https://groups.google.com/group/VBO-users" ; - "http://purl.obolibrary.org/obo/vbo.owl" ; - _:b178 ; - ; - ; - ; - ; - ; - ; - . + + "PSO"; + "active"; + ; + "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter."; + "Plant Stress Ontology"; + ; + ; + "agriculture"; + "https://github.com/Planteome/plant-stress-ontology/issues"; + "http://purl.obolibrary.org/obo/pso.owl"; + _:b54; + ; + ; + . - - "The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization" . + + "http://purl.obolibrary.org/obo/pso.obo" . -_:b178 "Sabrina Toro" ; - "Sabrina@tislab.org" . + + "http://purl.obolibrary.org/obo/pso.owl" . - - "http://purl.obolibrary.org/obo/vbo.owl" . + + "PW"; + "active"; + "A controlled vocabulary for annotating gene products to pathways."; + "Pathway ontology"; + ; + ; + ; + "biological systems"; + "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues"; + ; + "http://purl.obolibrary.org/obo/pw.owl"; + _:b55; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/vbo.obo" . + + "http://purl.obolibrary.org/obo/pw.obo" . - - "http://purl.obolibrary.org/obo/vbo.json" . + + "http://purl.obolibrary.org/obo/pw.owl" . - - "http://purl.obolibrary.org/obo/vbo/vbo-base.owl" . + + "RBO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments."; + "Radiation Biology Ontology"; + ; + "environment"; + "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues"; + "http://purl.obolibrary.org/obo/rbo.owl"; + _:b56; + ; + ; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/vbo/vbo-base.obo" . + + "http://purl.obolibrary.org/obo/rbo.json" . - - "http://purl.obolibrary.org/obo/vbo/vbo-base.json" . + + "http://purl.obolibrary.org/obo/rbo.obo" . - - "VO" ; - "active" ; - "VO is a biomedical ontology in the domain of vaccine and vaccination." ; - "Vaccine Ontology" ; - ; - ; - ; - "health" ; - "https://github.com/vaccineontology/VO/issues" ; - "http://purl.obolibrary.org/obo/vo.owl" ; - _:b179 ; - ; - . + + "http://purl.obolibrary.org/obo/rbo.owl" . - - "Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses" . + + "http://purl.obolibrary.org/obo/rbo/rbo-base.json" . - - "Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology" . + + "http://purl.obolibrary.org/obo/rbo/rbo-base.obo" . -_:b179 "Yongqunh He" ; - "yongqunh@med.umich.edu" . + + "http://purl.obolibrary.org/obo/rbo/rbo-base.owl" . - - "http://purl.obolibrary.org/obo/vo.owl" . + + "inactive"; + "For the description of covalent bonds in proteins."; + "Protein covalent bond"; + "chemistry and biochemistry"; + _:b169; + . - - "VT" ; - "active" ; - "An ontology of traits covering vertebrates" ; - "Vertebrate trait ontology" ; - ; - "phenotype" ; - "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues" ; - "http://purl.obolibrary.org/obo/vt.owl" ; - _:b180 ; - ; - . + + "orphaned"; + "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time."; + "Physico-chemical process"; + "chemistry and biochemistry"; + "http://purl.obolibrary.org/obo/rex.owl"; + . -_:b180 "Carissa Park" ; - "caripark@iastate.edu" . + + "http://purl.obolibrary.org/obo/rex.owl" . - - "http://purl.obolibrary.org/obo/vt.owl" . + + "inactive"; + "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures."; + "RNA ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/BGSU-RNA/rnao/issues"; + ; + "http://purl.obolibrary.org/obo/rnao.owl"; + _:b118; + ; + ; + . - - "VTO" ; - "active" ; - "Comprehensive hierarchy of extinct and extant vertebrate taxa." ; - "Vertebrate Taxonomy Ontology" ; - ; - ; - "organisms" ; - "https://github.com/phenoscape/vertebrate-taxonomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/vto.owl" ; - _:b181 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/rnao.obo" . -_:b181 "Jim Balhoff" ; - "balhoff@renci.org" . + + "http://purl.obolibrary.org/obo/rnao.owl" . - - "http://purl.obolibrary.org/obo/vto.owl" . + + "RO"; + "active"; + "Relationship types shared across multiple ontologies"; + "Relation Ontology"; + ; + "upper"; + "https://github.com/oborel/obo-relations/issues"; + "https://groups.google.com/forum/#!forum/obo-relations"; + "http://purl.obolibrary.org/obo/ro.owl"; + _:b58; + ; + ; + ; + ; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/vto.obo" . + + "Relation Ontology in obojson format"; + "http://purl.obolibrary.org/obo/ro.json" . - - "WBbt" ; - "active" ; - ; - "A structured controlled vocabulary of the anatomy of Caenorhabditis elegans." ; - "C. elegans Gross Anatomy Ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/wbbt.owl" ; - _:b182 ; - ; - ; - . + + "The obo edition is less expressive than the OWL, and has imports merged in"; + "Relation Ontology in obo format"; + "http://purl.obolibrary.org/obo/ro.obo" . - - "Caenorhabditis" . + + "Canonical edition"; + "Relation Ontology"; + "http://purl.obolibrary.org/obo/ro.owl" . - - "Building a cell and anatomy ontology of Caenorhabditis elegans" . + + "Minimal subset intended to work with BFO-classes"; + "RO Core relations"; + "http://purl.obolibrary.org/obo/ro/core.owl"; + . -_:b182 "Raymond Lee" ; - "raymond@caltech.edu" . + + "Axioms defined within RO and to be used in imports for other ontologies"; + "RO base ontology"; + "http://purl.obolibrary.org/obo/ro/ro-base.owl"; + . - - "http://purl.obolibrary.org/obo/wbbt.owl" . + + "Ecology subset"; + "http://purl.obolibrary.org/obo/ro/subsets/ro-eco.owl" . - - "http://purl.obolibrary.org/obo/wbbt.obo" . + + "For use in ecology and environmental science"; + "Interaction relations"; + "http://purl.obolibrary.org/obo/ro/subsets/ro-interaction.owl" . - - "WBls" ; - "active" ; - ; - "A structured controlled vocabulary of the development of Caenorhabditis elegans." ; - "C. elegans development ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/c-elegans-development-ontology/issues" ; - "http://purl.obolibrary.org/obo/wbls.owl" ; - _:b183 ; - ; - ; - . + + "For use in neuroscience"; + "Neuroscience subset"; + "http://purl.obolibrary.org/obo/ro/subsets/ro-neuro.owl"; + . - - "WormBase: a modern Model Organism Information Resource" . + + ; + "RS"; + "active"; + "Ontology of rat strains"; + "Rat Strain Ontology"; + ; + ; + "organisms"; + "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues"; + ; + "http://purl.obolibrary.org/obo/rs.owl"; + _:b59; + ; + ; + ; + . -_:b183 "Chris Grove" ; - "cgrove@caltech.edu" . + + "http://purl.obolibrary.org/obo/rs.obo" . - - "http://purl.obolibrary.org/obo/wbls.owl" . + + "http://purl.obolibrary.org/obo/rs.owl" . - - "http://purl.obolibrary.org/obo/wbls.obo" . + + "RXNO"; + "active"; + "Connects organic name reactions to their roles in an organic synthesis and to processes in MOP"; + "Name Reaction Ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/rsc-ontologies/rxno/issues"; + "chemistry-ontologies@googlegroups.com"; + "http://purl.obolibrary.org/obo/rxno.owl"; + _:b60; + ; + . - - "WBPhenotype" ; - "active" ; - ; - "A structured controlled vocabulary of Caenorhabditis elegans phenotypes" ; - "C. elegans phenotype" ; - ; - ; - "phenotype" ; - "https://github.com/obophenotype/c-elegans-phenotype-ontology/issues" ; - "http://purl.obolibrary.org/obo/wbphenotype.owl" ; - _:b184 ; - ; - ; - ; - . + + "Name Reaction Ontology"; + "http://purl.obolibrary.org/obo/rxno.owl" . - - "Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community." . + + ; + "inactive"; + "Subcellular anatomy ontology"; + "anatomy and development"; + _:b170; + . -_:b184 "Chris Grove" ; - "cgrove@caltech.edu" . + + "SBO"; + "active"; + "Terms commonly used in Systems Biology, and in particular in computational modeling."; + "Systems Biology Ontology"; + ; + "chemistry and biochemistry"; + "https://github.com/EBI-BioModels/SBO/issues"; + "http://purl.obolibrary.org/obo/sbo.owl"; + _:b98; + ; + . - - "http://purl.obolibrary.org/obo/wbphenotype.owl" . + + "http://purl.obolibrary.org/obo/sbo.owl" . - - "http://purl.obolibrary.org/obo/wbphenotype.obo" . + + "SCDO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease."; + "Sickle Cell Disease Ontology"; + ; + ; + ; + ; + "health"; + "https://github.com/scdodev/scdo-ontology/issues"; + "http://purl.obolibrary.org/obo/scdo.owl"; + _:b99; + ; + ; + . - - "http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-base.owl" . + + "http://purl.obolibrary.org/obo/scdo.obo" . - - "XAO" ; - "active" ; - ; - "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis." ; - "Xenopus Anatomy Ontology" ; - ; - ; - ; - "anatomy and development" ; - "https://github.com/xenopus-anatomy/xao/issues" ; - "http://purl.obolibrary.org/obo/xao.owl" ; - _:b185 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/scdo.owl" . - - "Xenopus" . + + "inactive"; + "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments."; + "Sample processing and separation techniques"; + "investigations"; + _:b171; + ; + ; + . - - "An ontology for Xenopus anatomy and development." . + + "http://purl.obolibrary.org/obo/sep.owl" . - - "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase." . + + "SEPIO"; + "active"; + "An ontology for representing the provenance of scientific claims and the evidence that supports them."; + "Scientific Evidence and Provenance Information Ontology"; + ; + "investigations"; + "https://github.com/monarch-initiative/SEPIO-ontology/issues"; + "http://purl.obolibrary.org/obo/sepio.owl"; + _:b61; + ; + . -_:b185 "Erik Segerdell" ; - "Erik.Segerdell@cchmc.org" . + + "SEPIO"; + "http://purl.obolibrary.org/obo/sepio.owl" . - - "http://purl.obolibrary.org/obo/xao.owl" . + + "SIBO"; + "orphaned"; + "Social Behavior in insects"; + "Social Insect Behavior Ontology"; + ; + "biological systems"; + "https://github.com/obophenotype/sibo/issues"; + "http://purl.obolibrary.org/obo/sibo.owl"; + _:b102; + ; + ; + . - - "http://purl.obolibrary.org/obo/xao.obo" . + + "http://purl.obolibrary.org/obo/sibo.obo" . - - "RGD Ontology Browser" ; - "RGD" . + + "http://purl.obolibrary.org/obo/sibo.owl" . -_:b16 "Jennifer Smith" ; - "jrsmith@mcw.edu" . + + "SLSO"; + "active"; + "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data."; + "Space Life Sciences Ontology"; + ; + "investigations"; + "https://github.com/nasa/LSDAO/issues"; + ; + "http://purl.obolibrary.org/obo/slso.owl"; + _:b62; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/xco.owl" . + + "Includes axioms linking to other ontologies, but no imports of those ontologies"; + "http://purl.obolibrary.org/obo/slso-base.owl" . - - "http://purl.obolibrary.org/obo/xco.obo" . + + "http://purl.obolibrary.org/obo/slso.json" . - - "XLMOD" ; - "active" ; - "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry." ; - "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" ; - ; - "chemistry and biochemistry" ; - "https://github.com/HUPO-PSI/xlmod-CV/issues" ; - "psidev-ms-vocab@lists.sourceforge.net" ; - "http://purl.obolibrary.org/obo/xlmod.owl" ; - _:b186 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/slso.obo" . -_:b186 "Lutz Fischer" ; - "lutz.fischer@tu-berlin.de" . + + "http://purl.obolibrary.org/obo/slso.owl" . - - "http://purl.obolibrary.org/obo/xlmod.obo" . + + "SO"; + "active"; + "A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases."; + "Sequence types and features ontology"; + ; + ; + ; + "chemistry and biochemistry"; + "https://github.com/The-Sequence-Ontology/SO-Ontologies/issues"; + "https://sourceforge.net/p/song/mailman/song-devel/"; + "http://purl.obolibrary.org/obo/so.owl"; + _:b63; + ; + ; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/xlmod.owl" . + + "Main SO release in OBO Format"; + "http://purl.obolibrary.org/obo/so.obo" . - - "XPO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis." ; - "Xenopus Phenotype Ontology" ; - ; - ; - "phenotype" ; - "https://github.com/obophenotype/xenopus-phenotype-ontology/issues" ; - "http://purl.obolibrary.org/obo/xpo.owl" ; - _:b187 ; - ; - ; - . + + "Main SO OWL release"; + "http://purl.obolibrary.org/obo/so.owl" . - - "The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development." . + + "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3"; + "Sequence Ontology Feature Annotation (SOFA) subset (OBO Format)"; + "http://purl.obolibrary.org/obo/so/subsets/SOFA.obo" . -_:b187 "Erik Segerdell" ; - "Erik.Segerdell@cchmc.org" . + + "This subset includes only locatable sequence features and is designed for use in such outputs as GFF3"; + "Sequence Ontology Feature Annotation (SOFA) subset (OWL)"; + "http://purl.obolibrary.org/obo/so/subsets/SOFA.owl" . - - "http://purl.obolibrary.org/obo/xpo.owl" . + + ; + "inactive"; + "Suggested Ontology for Pharmacogenomics"; + "chemistry and biochemistry"; + _:b172; + . - - "http://purl.obolibrary.org/obo/xpo.obo" . + + ; + "SPD"; + "active"; + "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)."; + "Spider Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/spider-ontology/issues"; + "http://purl.obolibrary.org/obo/spd.owl"; + _:b64; + ; + . - - "Danio" . + + "http://purl.obolibrary.org/obo/spd.owl" . -_:b113 "Yvonne Bradford" ; - "ybradford@zfin.org" . + + "STATO"; + "active"; + "STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions of application, and information needed or resulting from statistical methods, such as probability distributions, variables, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results."; + "The Statistical Methods Ontology"; + ; + ; + ; + "information technology"; + "https://github.com/ISA-tools/stato/issues"; + "http://purl.obolibrary.org/obo/stato.owl"; + _:b65; + ; + . - - "http://purl.obolibrary.org/obo/zeco.obo" . + + "http://purl.obolibrary.org/obo/stato.owl" . - - "http://purl.obolibrary.org/obo/zeco.owl" . + + "SWO"; + "active"; + "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community."; + "Software ontology"; + ; + ; + "information technology"; + "https://github.com/allysonlister/swo/issues"; + "http://purl.obolibrary.org/obo/swo.owl"; + _:b66; + ; + ; + . - - "http://purl.obolibrary.org/obo/zeco.json" . + + "http://purl.obolibrary.org/obo/swo.json" . - - "ZFA" ; - "active" ; - ; - "A structured controlled vocabulary of the anatomy and development of the Zebrafish" ; - "Zebrafish anatomy and development ontology" ; - ; - ; - "anatomy and development" ; - "https://github.com/cerivs/zebrafish-anatomical-ontology/issues" ; - "http://purl.obolibrary.org/obo/zfa.owl" ; - _:b188 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/swo.owl" . - - "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio." . + + ; + "SYMP"; + "active"; + "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease."; + "Symptom Ontology"; + ; + ; + ; + "health"; + "https://github.com/DiseaseOntology/SymptomOntology/issues"; + "http://purl.obolibrary.org/obo/symp.owl"; + _:b67; + ; + ; + . -_:b188 "Ceri Van Slyke" ; - "van_slyke@zfin.org" . + + "http://purl.obolibrary.org/obo/symp.obo" . - - "http://purl.obolibrary.org/obo/zfa.owl" . + + "http://purl.obolibrary.org/obo/symp.owl" . - - "http://purl.obolibrary.org/obo/zfa.obo" . + + "T4FS"; + "active"; + "A terminology for the skills necessary to make data FAIR and to keep it FAIR."; + "terms4FAIRskills"; + ; + ; + "information"; + "https://github.com/terms4fairskills/FAIRterminology/issues"; + "http://purl.obolibrary.org/obo/t4fs.owl"; + _:b69; + ; + ; + ; + ; + ; + ; + . - - "ZFS" ; - "active" ; - ; - "Developmental stages of the Zebrafish" ; - "Zebrafish developmental stages ontology" ; - ; - "anatomy and development" ; - "https://github.com/cerivs/zebrafish-anatomical-ontology/issues" ; - "http://purl.obolibrary.org/obo/zfs.owl" ; - _:b189 ; - ; - ; - ; - . + + "This community view of T4FS makes the ontology available in JSON format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy."; + "http://purl.obolibrary.org/obo/t4fs-community.json" . -_:b189 "Ceri Van Slyke" ; - "van_slyke@zfin.org" . + + "This community view of T4FS makes the ontology available in OBO format without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy."; + "http://purl.obolibrary.org/obo/t4fs-community.obo" . - - "http://purl.obolibrary.org/obo/zfs.owl" . + + "This community view of T4FS makes the ontology available in OWL without upper-level ontology (ULO) terms to give the user community a simpler view of the term hierarchy."; + "http://purl.obolibrary.org/obo/t4fs-community.owl" . - - "http://purl.obolibrary.org/obo/zfs.obo" . + + "http://purl.obolibrary.org/obo/t4fs.json" . - - "ZP" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism." ; - "Zebrafish Phenotype Ontology" ; - ; - "phenotype" ; - "https://github.com/obophenotype/zebrafish-phenotype-ontology/issues" ; - "http://purl.obolibrary.org/obo/zp.owl" ; - _:b190 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/t4fs.obo" . -_:b190 "Yvonne Bradford" ; - "ybradford@zfin.org" . + + "http://purl.obolibrary.org/obo/t4fs.owl" . - - "http://purl.obolibrary.org/obo/zp.owl" . + + ; + "inactive"; + "The anatomy of the Tick, Families: Ixodidae, Argassidae"; + "Tick Anatomy Ontology"; + ; + "anatomy and development"; + "http://purl.obolibrary.org/obo/tads.owl"; + _:b119; + ; + ; + . - - "http://purl.obolibrary.org/obo/zp.obo" . + + "http://purl.obolibrary.org/obo/tads.obo" . - - "Apache 2.0 License" . + + "http://purl.obolibrary.org/obo/tads.owl" . -_:b145 "Clair Kronk" ; - "kronkcj@mail.uc.edu" . + + ; + "inactive"; + "Terminology of Anatomy of Human Embryology"; + "anatomy and development"; + _:b173 . - - "http://purl.obolibrary.org/obo/gsso.owl" . + + ; + "inactive"; + "Terminology of Anatomy of Human Histology"; + "health"; + _:b174 . - - "http://purl.obolibrary.org/obo/gsso.obo" . + + ; + "inactive"; + "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa"; + "Teleost Anatomy Ontology"; + ; + ; + "anatomy and development"; + _:b175; + ; + . - - "http://purl.obolibrary.org/obo/gsso.json" . + + "http://purl.obolibrary.org/obo/tao.owl" . - - "hpo" . + + "TAXRANK"; + "active"; + "A vocabulary of taxonomic ranks (species, family, phylum, etc)"; + "Taxonomic rank vocabulary"; + ; + ; + "organisms"; + "https://github.com/phenoscape/taxrank/issues"; + "http://purl.obolibrary.org/obo/taxrank.owl"; + _:b70; + ; + ; + . - - "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." . + + "http://purl.obolibrary.org/obo/taxrank.obo" . - - "The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease." . + + "http://purl.obolibrary.org/obo/taxrank.owl" . - - "The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data." . + + ; + "inactive"; + "A structured controlled vocabulary of the anatomy of mosquitoes."; + "Mosquito gross anatomy ontology"; + ; + "anatomy and development"; + "http://purl.obolibrary.org/obo/tgma.owl"; + _:b120; + ; + ; + . - - "Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources." . + + "http://purl.obolibrary.org/obo/tgma.obo" . - - "JAX HPO Browser" ; - "HPO" . + + "http://purl.obolibrary.org/obo/tgma.owl" . - - "Monarch Phenotype Page" ; - "Monarch" . + + ; + "TO"; + "active"; + "A controlled vocabulary to describe phenotypic traits in plants."; + "Plant Trait Ontology"; + ; + ; + "phenotype"; + "https://github.com/Planteome/plant-trait-ontology/issues"; + ; + "http://purl.obolibrary.org/obo/to.owl"; + _:b71; + ; + ; + ; + . -_:b33 "Sebastian Koehler" ; - "dr.sebastian.koehler@gmail.com" . + + "http://purl.obolibrary.org/obo/to.obo" . - - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON format." ; - "Official HPO release in obographs JSON format" ; - "json" ; - "http://purl.obolibrary.org/obo/hp.json" . + + "http://purl.obolibrary.org/obo/to.owl" . - - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." ; - "Official HPO release in OBO format" ; - "obo" ; - "http://purl.obolibrary.org/obo/hp.obo" . + + "TRANS"; + "active"; + "An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natural reservoir, a susceptible host or source to a new host."; + "Pathogen Transmission Ontology"; + ; + ; + ; + "health"; + "https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues"; + "http://purl.obolibrary.org/obo/trans.owl"; + _:b72; + ; + ; + . - - "Manually classified version of the ontology without the use of a reasoner, with imported terms, in OWL format (RDF/XML)." ; - "Official HPO release in OWL" ; - "owl" ; - "http://purl.obolibrary.org/obo/hp.owl" . + + "http://purl.obolibrary.org/obo/trans.obo" . - - "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in obographs JSON file format." ; - "HPO base release in obographs JSON format" ; - "obo" ; - "http://purl.obolibrary.org/obo/hp/hp-base.json" . + + "http://purl.obolibrary.org/obo/trans.owl" . - - "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OBO file format." ; - "HPO base release in OBO format" ; - "obo" ; - "http://purl.obolibrary.org/obo/hp/hp-base.obo" . + + ; + "TTO"; + "active"; + "An ontology covering the taxonomy of teleosts (bony fish)"; + "Teleost taxonomy ontology"; + ; + ; + "organisms"; + "https://github.com/phenoscape/teleost-taxonomy-ontology/issues"; + "http://purl.obolibrary.org/obo/tto.owl"; + _:b73; + ; + ; + . - - "Manually curated version of the ontology without the use of a reasoner, with references to imported terms, in OWL (RDF/XML) file format." ; - "HPO base release in OWL format" ; - "owl" ; - "http://purl.obolibrary.org/obo/hp/hp-base.owl" . + + "http://purl.obolibrary.org/obo/tto.obo" . - - "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in obographs JSON file format." ; - "HPO full release in obographs JSON format" ; - "json" ; - "http://purl.obolibrary.org/obo/hp/hp-full.json" . + + "http://purl.obolibrary.org/obo/tto.owl" . - - "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OBO file format." ; - "HPO full release in OBO format" ; - "obo" ; - "http://purl.obolibrary.org/obo/hp/hp-full.obo" . + + "TXPO"; + "active"; + "TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity."; + "Toxic Process Ontology"; + ; + ; + "chemistry and biochemistry"; + "https://github.com/txpo-ontology/TXPO/issues"; + ; + ; + "http://purl.obolibrary.org/obo/txpo.owl"; + _:b74; + ; + . - - "Version of the ontology automatically classified with the use of a reasoner, including all imported terms, in OWL (RDF/XML) file format." ; - "HPO full release in OWL format" ; - "owl" ; - "http://purl.obolibrary.org/obo/hp/hp-full.owl" . + + "http://purl.obolibrary.org/obo/txpo.owl" . - - "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in obographs JSON file format." ; - "HPO International Edition in obographs JSON format" ; - "json" ; - "http://purl.obolibrary.org/obo/hp/hp-international.json" . + + ; + "UBERON"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + ; + "An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies"; + "Uberon multi-species anatomy ontology"; + ; + ; + ; + "anatomy and development"; + ; + ; + ; + ; + "https://github.com/obophenotype/uberon/issues"; + "https://lists.sourceforge.net/lists/listinfo/obo-anatomy"; + ; + ; + ; + ; + ; + "http://purl.obolibrary.org/obo/uberon.owl"; + _:b75; + ; + ; + ; + ; + ; + ; + ; + ; + . - - "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OBO file format." ; - "HPO International Edition in OBO format" ; - "obo" ; - "http://purl.obolibrary.org/obo/hp/hp-international.obo" . + + "core ontology"; + "Uberon"; + a ; + "http://purl.obolibrary.org/obo/uberon.owl" . - - "Version of the ontology corresponding to the primary release (hp.owl), with translated labels, synonyms, and definitions, in OWL (RDF/XML) file format." ; - "HPO International Edition in OWL format" ; - "owl" ; - "http://purl.obolibrary.org/obo/hp/hp-international.owl" . + + "Metazoa"^^; + "Uberon plus all metazoan ontologies"; + "Uberon collected metazoan ontology"; + a ; + "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl"; + . - - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in obographs JSON file format." ; - "HPO simple, manually classified, without imports in obographs JSON format" ; - "json" ; - "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.json" . + + "Metazoa"^^; + "Uberon and all metazoan ontologies with redundant species-specific terms removed"; + "Uberon composite metazoan ontology"; + a ; + "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl"; + . - - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OBO file format." ; - "HPO simple, manually classified, without imports in OBO format" ; - "obo" ; - "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.obo" . + + "Vertebrata"^^; + "Uberon composite vertebrate ontology"; + a ; + "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl"; + . - - "Simple, manually curated version of the ontology without the use of a reasoner, and without any imported terms, in OWL (RDF/XML) file format." ; - "HPO simple, manually classified, without imports in OWL format" ; - "owl" ; - "http://purl.obolibrary.org/obo/hp/hp-simple-non-classified.owl" . + + "Axioms defined within Uberon and to be used in imports for other ontologies"; + "Uberon base ontology"; + "http://purl.obolibrary.org/obo/uberon/uberon-base.owl"; + . - - "https://hpo.jax.org/app/data/annotations" ; - "HPO Annotations (Phenotype to Disease)" ; - "tsv" ; - "http://purl.obolibrary.org/obo/hp/phenotype.hpoa" . + + "Uberon edition that excludes external ontologies and most relations"; + "Uberon basic"; + "obo"; + a ; + "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo" . - - "https://hpo.jax.org/app/data/annotations" ; - "HPO phenotype to gene annotations" ; - "tsv" ; - "http://purl.obolibrary.org/obo/hp/phenotype_to_genes.txt" . + + "UO"; + "active"; + "Metrical units for use in conjunction with PATO"; + "Units of measurement ontology"; + ; + ; + "phenotype"; + "https://github.com/bio-ontology-research-group/unit-ontology/issues"; + "http://purl.obolibrary.org/obo/uo.owl"; + _:b76; + ; + ; + ; + . - - "https://hpo.jax.org/app/data/annotations" ; - "HPO gene to phenotype annotations" ; - "tsv" ; - "http://purl.obolibrary.org/obo/hp/genes_to_phenotype.txt" . + + "http://purl.obolibrary.org/obo/uo.json" . - - "KISAO" ; - "active" ; - "A classification of algorithms for simulating biology, their parameters, and their outputs" ; - "Kinetic Simulation Algorithm Ontology" ; - ; - ; - "simulation" ; - ; - ; - "https://github.com/SED-ML/KiSAO/issues" ; - ; - ; - ; - "http://purl.obolibrary.org/obo/kisao.owl" ; - _:b191 ; - ; - . + + "http://purl.obolibrary.org/obo/uo.obo" . - - "Artistic License 2.0" . + + "http://purl.obolibrary.org/obo/uo.owl" . - - "Controlled vocabularies and semantics in systems biology" . + + "inactive"; + ; + "A manually curated resource for the representation and annotation of metabolic pathways"; + "Unipathway"; + ; + ; + "biological systems"; + "https://github.com/geneontology/unipathway/issues"; + "http://purl.obolibrary.org/obo/upa.owl"; + _:b121; + ; + ; + . - - "NIH P41EB023912" . + + "http://purl.obolibrary.org/obo/upa.obo" . - - "NIH R35GM119771" . + + "http://purl.obolibrary.org/obo/upa.owl" . - - "Ontology Lookup Service" ; - "OLS" . + + "UPHENO"; + "active"; + "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology."; + "Unified Phenotype Ontology (uPheno)"; + ; + ; + ; + ; + "phenotype"; + "https://github.com/obophenotype/upheno/issues"; + "https://groups.google.com/forum/#!forum/phenotype-ontologies-editors"; + "http://purl.obolibrary.org/obo/upheno.owl"; + _:b77; + ; + ; + ; + . - - "BioPortal" ; - "BioPortal" . + + "uPheno 1 is no longer actively maintained, please start using uPheno 2 (see below)."; + "uPheno 1 (inactive)"; + "http://purl.obolibrary.org/obo/upheno.owl"; + . - - "OntoBee" ; - "OntoBee" . + + "No longer actively maintained."; + "uPheno MP-HP equivalence axioms"; + "http://purl.obolibrary.org/obo/upheno/mp-hp-view.owl"; + . -_:b191 "Jonathan Karr" ; - "jonrkarr@gmail.com" . + + "The new version of uPheno, along with species independent phenotypes and additional phenotype relations. The ontology is still in Beta status, but we recommend users to migrate their infrastructures to uPheno 2 as uPheno 1 is no longer actively maintained."; + "uPheno 2"; + "http://purl.obolibrary.org/obo/upheno/v2/upheno.owl"; + . - - "http://purl.obolibrary.org/obo/kisao.owl" . + + "VariO"; + "orphaned"; + "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations."; + "Variation Ontology"; + ; + ; + ; + ; + "biological systems"; + "http://variationontology.org/instructions.shtml"; + "http://purl.obolibrary.org/obo/vario.owl"; + _:b103; + ; + ; + . -_:b161 "Rahuman Sheriff" ; - "sheriff@ebi.ac.uk" . + + "VariO in OBO format"; + "http://purl.obolibrary.org/obo/vario.obo" . - - "http://purl.obolibrary.org/obo/sbo.owl" . + + "VariO main release in OWL"; + "http://purl.obolibrary.org/obo/vario.owl" . - - "SCDO" ; - "active" ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - ; - "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease." ; - "Sickle Cell Disease Ontology" ; - ; - ; - ; - ; - "health" ; - "https://github.com/scdodev/scdo-ontology/issues" ; - "http://purl.obolibrary.org/obo/scdo.owl" ; - _:b192 ; - ; - ; - . + + "VBO"; + "active"; + ; + "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names."; + "Vertebrate Breed Ontology"; + ; + ; + "organisms"; + "https://github.com/monarch-initiative/vertebrate-breed-ontology/issues"; + "https://groups.google.com/group/VBO-users"; + "http://purl.obolibrary.org/obo/vbo.owl"; + _:b78; + ; + ; + ; + ; + ; + ; + . - - "EUPATH" ; - "inactive" ; - "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org)." ; - "VEuPathDB ontology" ; - ; - ; - "organisms" ; - "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues" ; - "http://purl.obolibrary.org/obo/eupath.owl" ; - _:b193 ; - ; - . + + "http://purl.obolibrary.org/obo/vbo.json" . - - "inactive" ; - "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it." ; - "Malaria Ontology" ; - ; - "health" ; - "http://purl.obolibrary.org/obo/idomal.owl" ; - _:b194 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/vbo.obo" . - - "GPL-3.0" . + + "http://purl.obolibrary.org/obo/vbo.owl" . - - "The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation." . + + "http://purl.obolibrary.org/obo/vbo/vbo-base.json" . - - "The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications." . + + "http://purl.obolibrary.org/obo/vbo/vbo-base.obo" . - - "The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation." . + + "http://purl.obolibrary.org/obo/vbo/vbo-base.owl" . -_:b192 "Jade Hotchkiss" ; - "giant.plankton@gmail.com" . + + "inactive"; + "Vertebrate Homologous Ontology Group Ontology"; + "anatomy and development"; + . - - "http://purl.obolibrary.org/obo/scdo.owl" . + + "http://purl.obolibrary.org/obo/vhog.owl" . - - "http://purl.obolibrary.org/obo/scdo.obo" . + + "VO"; + "active"; + "VO is a biomedical ontology in the domain of vaccine and vaccination."; + "Vaccine Ontology"; + ; + ; + ; + "health"; + "https://github.com/vaccineontology/VO/issues"; + "http://purl.obolibrary.org/obo/vo.owl"; + _:b80; + ; + . - - "orphaned" ; - "An ontology of physico-chemical methods and properties." ; - "Physico-chemical methods and properties" ; - "chemistry and biochemistry" ; - "http://purl.obolibrary.org/obo/fix.owl" ; - _:b195 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/vo.owl" . -_:b195 "chEBI" . + + ; + "inactive"; + "Vertebrate skeletal anatomy ontology."; + "Vertebrate Skeletal Anatomy Ontology-"; + "anatomy and development"; + _:b176; + ; + ; + . - - "http://purl.obolibrary.org/obo/fix.owl" . + + "http://purl.obolibrary.org/obo/vsao.owl" . - - "http://purl.obolibrary.org/obo/fix.obo" . + + "VT"; + "active"; + "An ontology of traits covering vertebrates"; + "Vertebrate trait ontology"; + ; + "phenotype"; + "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues"; + "http://purl.obolibrary.org/obo/vt.owl"; + _:b81; + ; + . + + + "http://purl.obolibrary.org/obo/vt.owl" . + + + "VTO"; + "active"; + "Comprehensive hierarchy of extinct and extant vertebrate taxa."; + "Vertebrate Taxonomy Ontology"; + ; + ; + "organisms"; + "https://github.com/phenoscape/vertebrate-taxonomy-ontology/issues"; + "http://purl.obolibrary.org/obo/vto.owl"; + _:b82; + ; + ; + . + + + "http://purl.obolibrary.org/obo/vto.obo" . + + + "http://purl.obolibrary.org/obo/vto.owl" . + + + ; + "WBbt"; + "active"; + "A structured controlled vocabulary of the anatomy of Caenorhabditis elegans."; + "C. elegans Gross Anatomy Ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology/issues"; + "http://purl.obolibrary.org/obo/wbbt.owl"; + _:b83; + ; + ; + . + + + "http://purl.obolibrary.org/obo/wbbt.obo" . + + + "http://purl.obolibrary.org/obo/wbbt.owl" . + + + ; + "WBls"; + "active"; + "A structured controlled vocabulary of the development of Caenorhabditis elegans."; + "C. elegans development ontology"; + ; + ; + "anatomy and development"; + "https://github.com/obophenotype/c-elegans-development-ontology/issues"; + "http://purl.obolibrary.org/obo/wbls.owl"; + _:b84; + ; + ; + . - - "MAMO" ; - "orphaned" ; - "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features." ; - "Mathematical modeling ontology" ; - ; - "simulation" ; - "http://sourceforge.net/p/mamo-ontology/tickets/" ; - "http://purl.obolibrary.org/obo/mamo.owl" ; - ; - . + + "http://purl.obolibrary.org/obo/wbls.obo" . - - "http://purl.obolibrary.org/obo/mamo.owl" . + + "http://purl.obolibrary.org/obo/wbls.owl" . - - "orphaned" ; - "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time." ; - "Physico-chemical process" ; - "chemistry and biochemistry" ; - "http://purl.obolibrary.org/obo/rex.owl" ; - . + + ; + "WBPhenotype"; + "active"; + "A structured controlled vocabulary of Caenorhabditis elegans phenotypes"; + "C. elegans phenotype"; + ; + ; + "phenotype"; + "https://github.com/obophenotype/c-elegans-phenotype-ontology/issues"; + "http://purl.obolibrary.org/obo/wbphenotype.owl"; + _:b85; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/rex.owl" . + + "http://purl.obolibrary.org/obo/wbphenotype.obo" . - - "SIBO" ; - "orphaned" ; - "Social Behavior in insects" ; - "Social Insect Behavior Ontology" ; - ; - "biological systems" ; - "https://github.com/obophenotype/sibo/issues" ; - "http://purl.obolibrary.org/obo/sibo.owl" ; - _:b196 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/wbphenotype.owl" . -_:b196 "Chris Mungall" ; - "cjmungall@lbl.gov" . + + "http://purl.obolibrary.org/obo/wbphenotype/wbphenotype-base.owl" . - - "http://purl.obolibrary.org/obo/sibo.owl" . + + ; + "XAO"; + "active"; + "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis."; + "Xenopus Anatomy Ontology"; + ; + ; + ; + "anatomy and development"; + "https://github.com/xenopus-anatomy/xao/issues"; + "http://purl.obolibrary.org/obo/xao.owl"; + _:b86; + ; + ; + . - - "http://purl.obolibrary.org/obo/sibo.obo" . + + "http://purl.obolibrary.org/obo/xao.obo" . - - "VariO" ; - "orphaned" ; - "Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations." ; - "Variation Ontology" ; - ; - ; - ; - ; - "biological systems" ; - "http://variationontology.org/instructions.shtml" ; - "http://purl.obolibrary.org/obo/vario.owl" ; - _:b197 ; - ; - ; - . + + "http://purl.obolibrary.org/obo/xao.owl" . - - "Variation Ontology for annotation of variation effects and mechanisms" . + + "XCO"; + "active"; + "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms."; + "Experimental condition ontology"; + ; + ; + ; + "health"; + "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues"; + ; + "http://purl.obolibrary.org/obo/xco.owl"; + _:b87; + ; + ; + ; + . - - "Variation ontology: annotator guide" . + + "http://purl.obolibrary.org/obo/xco.obo" . - - "Types and effects of protein variations" . + + "http://purl.obolibrary.org/obo/xco.owl" . -_:b197 "Mauno Vihinen" ; - "mauno.vihinen@med.lu.se" . + + "XLMOD"; + "active"; + "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry."; + "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary"; + ; + "chemistry and biochemistry"; + "https://github.com/HUPO-PSI/xlmod-CV/issues"; + "psidev-ms-vocab@lists.sourceforge.net"; + "http://purl.obolibrary.org/obo/xlmod.owl"; + _:b88; + ; + ; + ; + . - - "VariO main release in OWL" ; - "http://purl.obolibrary.org/obo/vario.owl" . + + "http://purl.obolibrary.org/obo/xlmod.obo" . - - "VariO in OBO format" ; - "http://purl.obolibrary.org/obo/vario.obo" . + + "http://purl.obolibrary.org/obo/xlmod.owl" . - - "Malaria study data integration and information retrieval based on OBO Foundry ontologies." . + + ; + "XPO"; + "active"; + ; + ; + ; + ; + ; + ; + ; + ; + "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis."; + "Xenopus Phenotype Ontology"; + ; + ; + "phenotype"; + "https://github.com/obophenotype/xenopus-phenotype-ontology/issues"; + "http://purl.obolibrary.org/obo/xpo.owl"; + _:b89; + ; + ; + . -_:b193 "Jie Zheng" ; - "jiezhen@med.umich.edu" . + + "http://purl.obolibrary.org/obo/xpo.obo" . - - "http://purl.obolibrary.org/obo/eupath.owl" . + + "http://purl.obolibrary.org/obo/xpo.owl" . - - "MFMO" ; - "inactive" ; - ; - ; - "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors." ; - "Mammalian Feeding Muscle Ontology" ; - ; - "anatomy and development" ; - "https://github.com/RDruzinsky/feedontology/issues" ; - "http://purl.obolibrary.org/obo/mfmo.owl" ; - _:b198 ; - ; - . + + ; + "inactive"; + "Yeast phenotypes"; + "phenotype"; + _:b177; + . -_:b198 "Robert Druzinsky" ; - "druzinsk@uic.edu" . + + ; + "inactive"; + "Maize gross anatomy"; + "anatomy and development"; + _:b178; + . - - "http://purl.obolibrary.org/obo/mfmo.owl" . + + ; + "ZECO"; + "active"; + "Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN"; + "Zebrafish Experimental Conditions Ontology"; + ; + "environment"; + "https://github.com/ybradford/zebrafish-experimental-conditions-ontology/issues"; + "http://purl.obolibrary.org/obo/zeco.owl"; + _:b91; + ; + ; + ; + . -_:b110 "Carrine Blank" ; - "carrine.blank@umontana.edu" . + + "http://purl.obolibrary.org/obo/zeco.json" . - - "http://purl.obolibrary.org/obo/micro.owl" . + + "http://purl.obolibrary.org/obo/zeco.obo" . - - "OGSF" ; - "inactive" ; - "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process." ; - "Ontology of Genetic Susceptibility Factor" ; - ; - "investigations" ; - "https://github.com/linikujp/OGSF/issues" ; - "http://purl.obolibrary.org/obo/ogsf.owl" ; - _:b199 ; - ; - . + + "http://purl.obolibrary.org/obo/zeco.owl" . -_:b199 "Asiyah Yu Lin" ; - "linikujp@gmail.com" . + + ; + "ZFA"; + "active"; + "A structured controlled vocabulary of the anatomy and development of the Zebrafish"; + "Zebrafish anatomy and development ontology"; + ; + ; + "anatomy and development"; + "https://github.com/cerivs/zebrafish-anatomical-ontology/issues"; + "http://purl.obolibrary.org/obo/zfa.owl"; + _:b92; + ; + ; + . - - "http://purl.obolibrary.org/obo/ogsf.owl" . + + "http://purl.obolibrary.org/obo/zfa.obo" . - - "OlatDv" ; - "inactive" ; - "Life cycle stages for Medaka" ; - "Medaka Developmental Stages" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; - "http://purl.obolibrary.org/obo/olatdv.owl" ; - _:b200 ; - ; - ; - ; - . + + "http://purl.obolibrary.org/obo/zfa.owl" . -_:b200 "Frédéric Bastian" ; - "frederic.bastian@unil.ch" . + + ; + "ZFS"; + "active"; + "Developmental stages of the Zebrafish"; + "Zebrafish developmental stages ontology"; + ; + "anatomy and development"; + "https://github.com/cerivs/zebrafish-anatomical-ontology/issues"; + "http://purl.obolibrary.org/obo/zfs.owl"; + _:b93; + ; + ; + ; + . - - "http://purl.obolibrary.org/obo/olatdv.obo" . + + "http://purl.obolibrary.org/obo/zfs.obo" . - - "http://purl.obolibrary.org/obo/olatdv.owl" . + + "http://purl.obolibrary.org/obo/zfs.owl" . - - "PdumDv" ; - "inactive" ; - "Life cycle stages for Platynereis dumerilii" ; - "Platynereis Developmental Stages" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/developmental-stage-ontologies/issues" ; - "http://purl.obolibrary.org/obo/pdumdv.owl" ; - _:b201 ; - ; - ; - ; - . + + "ZP"; + "active"; + ; + ; + ; + ; + ; + ; + ; + "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism."; + "Zebrafish Phenotype Ontology"; + ; + "phenotype"; + "https://github.com/obophenotype/zebrafish-phenotype-ontology/issues"; + "http://purl.obolibrary.org/obo/zp.owl"; + _:b94; + ; + ; + . -_:b201 "Frédéric Bastian" ; - "frederic.bastian@unil.ch" . + + "http://purl.obolibrary.org/obo/zp.obo" . - - "http://purl.obolibrary.org/obo/pdumdv.owl" . + + "http://purl.obolibrary.org/obo/zp.owl" . - - "http://purl.obolibrary.org/obo/pdumdv.obo" . + + "RGD Ontology Browser"; + "RGD" . - - "AEO" ; - "inactive" ; - "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology" ; - "Anatomical Entity Ontology" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/aeo.owl" ; - _:b202 ; - ; - . + + "RGD Ontology Browser"; + "RGD" . -_:b202 "Jonathan Bard" ; - "J.Bard@ed.ac.uk" . + + "RGD Ontology Browser"; + "RGD" . - - "http://purl.obolibrary.org/obo/aeo.owl" . + + "RGD Ontology Browser"; + "RGD" . - - "inactive" ; - ; - "An anatomical and developmental ontology for cephalopods" ; - "Cephalopod Ontology" ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/cephalopod-ontology/issues" ; - "http://purl.obolibrary.org/obo/ceph.owl" ; - _:b203 ; - ; - ; - . + + "Gene Ontology AmiGO 2 Browser"; + "RGD" . - - "Cephalopod" . + + "RGD Ontology Browser"; + "RGD" . -_:b203 "Chris Mungall" ; - "cjmungall@lbl.gov" . + + "Apache 2.0 License" . - - "main version" ; - "http://purl.obolibrary.org/obo/ceph.owl" . + + "EBI CHEBI Browser"; + "CHEBI" . - - "oboformat edition" ; - "http://purl.obolibrary.org/obo/ceph.obo" . + + "NCBI Taxonomy Browser"; + "NCBI" . - - "inactive" ; - ; - ; - ; - ; - "A structured controlled vocabulary of stage-specific anatomical structures of the developing human." ; - "Human developmental anatomy, abstract" ; - ; - ; - "anatomy and development" ; - "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues" ; - "http://purl.obolibrary.org/obo/ehdaa2.owl" ; - _:b204 ; - ; - ; - . + + "The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments." . - - "A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20)." . + + "Virtual Fly Brain"; + "VFB" . -_:b204 "Jonathan Bard" ; - "J.Bard@ed.ac.uk" . + + "BioPortal Ontology Browser"; + "BioPortal" . - - "http://purl.obolibrary.org/obo/ehdaa2.owl" . + + "BioPortal Browser"; + "BioPortal" . - - "http://purl.obolibrary.org/obo/ehdaa2.obo" . + + "BioPortal"; + "BioPortal" . - - "FMA" ; - "inactive" ; - ; - "This is currently a slimmed down version of FMA" ; - "Foundational Model of Anatomy Ontology (subset)" ; - ; - ; - ; - ; - "anatomy and development" ; - "https://bitbucket.org/uwsig/fma/issues" ; - "http://purl.obolibrary.org/obo/fma.owl" ; - _:b205 ; - ; - ; - . + + "BioPortal Ontology Browser"; + "BioPortal" . - - "Translating the Foundational Model of Anatomy into OWL" . + + "BioPortal Ontology Browser"; + "BioPortal" . - - "The foundational model of anatomy in OWL: Experience and perspectives" . + + "BioPortal Browser"; + "BioPortal" . - - "Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study" . + + "BioPortal Ontology Browser"; + "BioPortal" . -_:b205 "Onard Mejino" ; - "mejino@u.washington.edu" . + + "BioPortal Ontology Browser"; + "BioPortal" . - - "http://purl.obolibrary.org/obo/fma.owl" . + + "BioPortal Ontology Browser"; + "BioPortal" . -_:b194 "Pantelis Topalis" ; - "topalis@imbb.forth.gr" . + + ; + "CC BY 2.0" . - - "http://purl.obolibrary.org/obo/idomal.owl" . + + ; + "CC BY 3.0" . - - "http://purl.obolibrary.org/obo/idomal.obo" . + + ; + "CC BY 4.0" . - - "inactive" ; - ; - "Application ontology for entities related to insecticide resistance in mosquitos" ; - "Mosquito insecticide resistance" ; - "environment" ; - "http://purl.obolibrary.org/obo/miro.owl" ; - _:b206 ; - ; - . + + ; + "CC0 1.0" . - - "Anopheles" . + + "DO Browser"; + "DO" . -_:b206 "Christos (Kitsos) Louis" ; - "louis@imbb.forth.gr" . + + "DO Browser"; + "DO" . - - "http://purl.obolibrary.org/obo/miro.owl" . + + "The Ontology of Biological Attributes (OBA) - computational traits for the life sciences" . - - "http://purl.obolibrary.org/obo/miro.obo" . + + "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)" . - - "inactive" ; - "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures." ; - "RNA ontology" ; - ; - "chemistry and biochemistry" ; - "https://github.com/BGSU-RNA/rnao/issues" ; - ; - "http://purl.obolibrary.org/obo/rnao.owl" ; - _:b207 ; - ; - ; - . + + "An ontology to clarify homology-related concepts" . - - "RNA Ontology jOWL Browser" ; - "RNAO" . + + "The Teleost Taxonomy Ontology" . -_:b207 "Colin Batchelor" ; - "BatchelorC@rsc.org" . + + "Ontology for the Avida digital evolution platform" . - - "http://purl.obolibrary.org/obo/rnao.owl" . + + "Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)" . - - "http://purl.obolibrary.org/obo/rnao.obo" . + + "Mondo: Integrating Disease Terminology Across Communities" . - - "inactive" ; - ; - "The anatomy of the Tick, Families: Ixodidae, Argassidae" ; - "Tick Anatomy Ontology" ; - ; - "anatomy and development" ; - "http://purl.obolibrary.org/obo/tads.owl" ; - _:b208 ; - ; - ; - . + + "ChEBI: re-engineered for a sustainable future" . - - "Ixodidae" . + + "The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics" . -_:b208 "Daniel Sonenshine" ; - "dsonensh@odu.edu" . + + "The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization" . - - "http://purl.obolibrary.org/obo/tads.owl" . + + "The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes" . - - "http://purl.obolibrary.org/obo/tads.obo" . + + "The environment ontology: contextualising biological and biomedical entities" . - - "inactive" ; - ; - "A structured controlled vocabulary of the anatomy of mosquitoes." ; - "Mosquito gross anatomy ontology" ; - ; - "anatomy and development" ; - "http://purl.obolibrary.org/obo/tgma.owl" ; - _:b209 ; - ; - ; - . + + "Development and application of an Interaction Network Ontology for literature mining of vaccine-associated gene-gene interactions" . -_:b209 "Pantelis Topalis" ; - "topalis@imbb.forth.gr" . + + "Toward a standard formal semantic representation of the model card report" . - - "http://purl.obolibrary.org/obo/tgma.owl" . + + "An ontology for microbial phenotypes" . - - "http://purl.obolibrary.org/obo/tgma.obo" . + + "The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation" . - - "inactive" ; - ; - "A manually curated resource for the representation and annotation of metabolic pathways" ; - "Unipathway" ; - ; - ; - "biological systems" ; - "https://github.com/geneontology/unipathway/issues" ; - "http://purl.obolibrary.org/obo/upa.owl" ; - _:b210 ; - ; - ; - . + + "The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation" . - - "UniPathway: a resource for the exploration and annotation of metabolic pathways" . + + "Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request" . -_:b210 "Anne Morgat" ; - "Anne.Morgat@sib.swiss" . + + "Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies" . - - "http://purl.obolibrary.org/obo/upa.owl" . + + "Extension of Roles in the ChEBI Ontology" . - - "http://purl.obolibrary.org/obo/upa.obo" . + + "Establishing a Common Nutritional Vocabulary - From Food Production to Diet" . - - "inactive" ; - ; - "Amphibian gross anatomy" ; - "anatomy and development" ; - _:b211 ; - . + + "The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data" . - - "Amphibia" . + + "Initial Implementation of a Comparative Data Analysis Ontology" . -_:b211 "David Blackburn" ; - "david.c.blackburn@gmail.com" . + + "OntONeo: The Obstetric and Neonatal Ontology" . - - "inactive" ; - "Animal natural history and life history" ; - "organisms" ; - _:b212 ; - . + + "Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal Domain" . -_:b212 "Animal Diversity Web technical staff" ; - "adw_geeks@umich.edu" . + + "EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report" . - - "inactive" ; - "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events" ; - "Adverse Event Reporting Ontology" ; - ; - "health" ; - _:b213 ; - ; - . + + "LABO: An Ontology for Laboratory Test Prescription and Reporting" . -_:b213 "Melanie Courtot" ; - "mcourtot@gmail.com" . + + "GNOme - Glycan Naming and Subsumption Ontology" . - - "http://purl.obolibrary.org/obo/aero.owl" . + + "Malaria study data integration and information retrieval based on OBO Foundry ontologies." . - - "inactive" ; - ; - "Amphibian taxonomy" ; - "organisms" ; - _:b214 ; - . + + "GNOme Glycan Composition Browser"; + "Composition Browser" . -_:b214 "David Blackburn" ; - "david.c.blackburn@gmail.com" . + + "GNOme Glycan Structure Browser"; + "Structure Browser" . - - "inactive" ; - "An application ontology built for beta cell genomics studies." ; - "Beta Cell Genomics Ontology" ; - ; - "anatomy and development" ; - "https://github.com/obi-bcgo/bcgo/issues" ; - _:b215 ; - ; - . + + "NIH R01-HG004838" . -_:b215 "Jie Zheng" ; - "jiezheng@pennmedicine.upenn.edu" . + + "NIH P41EB023912" . - - "http://purl.obolibrary.org/obo/bcgo.owl" . + + "NIH R35GM119771" . - - "inactive" ; - ; - "Bilateria anatomy" ; - "anatomy and development" ; - _:b216 ; - ; - . + + "JAX HPO Browser"; + "HPO" . - - "Bilateria" . + + "hpo" . -_:b216 "Thorsten Henrich" ; - "henrich@embl.de" . + + "INCF KnowledgeSpace Portal"; + "KnowledgeSpace" . - - "http://purl.obolibrary.org/obo/bila.owl" . + + "Monarch Initiative Disease Browser"; + "Monarch" . - - "inactive" ; - "Gene Regulation Ontology" ; - "chemistry and biochemistry" ; - _:b217 ; - . + + "OntoBee Browser"; + "OntoBee" . -_:b217 "Vivian Lee" ; - "vlee@ebi.ac.uk" . + + "Ontoavida HTML Browser"; + "Human-readable (HTML)" . -_:b19 "Melissa Haendel" ; - "haendel@ohsu.edu" . + + "RGD MP Browser"; + "RGD" . - - "http://purl.obolibrary.org/obo/caro.owl" . + + "NIH P41-HG002273" . - - "inactive" ; - "CranioMaxilloFacial ontology" ; - "health" ; - _:b218 ; - . + + "NIH R24-OD011883" . -_:b218 "Mark Engelstad" ; - "engelsta@ohsu.edu" . + + "TOXPILOT"; + "TOXPILOT" . - - "inactive" ; - ; - "Dendritic cell" ; - "anatomy and development" ; - _:b219 ; - . + + "Ontology Lookup Service"; + "OLS" . -_:b219 "Lindsay Cowell" ; - "Lindsay.Cowell@utsouthwestern.edu" . + + "ECO Browser"; + "ECO" . - - "inactive" ; - "A formal represention for drug-drug interactions knowledge." ; - "The Drug-Drug Interactions Ontology" ; - ; - ; - "health" ; - "https://github.com/labda/DINTO/issues" ; - _:b220 ; - ; - . + + "GPL-3.0" . - - "DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug–Drug Interactions and Their Mechanisms." . + + "MGI MP Browser"; + "MGI" . -_:b220 "Maria Herrero" ; - "maria.herrero@kcl.ac.uk" . + + "Mondo: Unifying diseases for the world, by the world" . - - "http://purl.obolibrary.org/obo/dinto.owl" . + + "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium" . - - "inactive" ; - ; - "Human developmental anatomy, timed version" ; - "anatomy and development" ; - _:b221 ; - . + + "Using ontologies to describe mouse phenotypes" . -_:b221 "Jonathan Bard" ; - "J.Bard@ed.ac.uk" . + + "The Sequence Ontology: a tool for the unification of genome annotations." . - - "inactive" ; - ; - "Human developmental anatomy, abstract version" ; - "anatomy and development" ; - _:b222 . + + "FlyBase: anatomical data, images and queries" . -_:b222 "Jonathan Bard" ; - "J.Bard@ed.ac.uk" . + + "Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study" . - - "inactive" ; - ; - "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)." ; - "Mouse gross anatomy and development, timed" ; - "anatomy and development" ; - _:b223 ; - ; - ; - . + + "The foundational model of anatomy in OWL: Experience and perspectives" . -_:b223 "Terry Hayamizu" ; - "Terry.Hayamizu@jax.org" . + + "An anatomy ontology to represent biological knowledge in Dictyostelium discoideum" . - - "http://purl.obolibrary.org/obo/emap.owl" . + + "Building a cell and anatomy ontology of Caenorhabditis elegans" . - - "Ontologies as integrative tools for plant science." . + + "The PSI-MOD community standard for representation of protein modification data" . -_:b79 "Pankaj Jaiswal" ; - "jaiswalp@science.oregonstate.edu" . + + "Translating the Foundational Model of Anatomy into OWL" . - - "http://purl.obolibrary.org/obo/eo.owl" . + + "An ontology for Xenopus anatomy and development." . - - "http://purl.obolibrary.org/obo/eo.obo" . + + "The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease." . - - "inactive" ; - "An ontology designed to support the semantic annotation of epidemiology resources" ; - "Epidemiology Ontology" ; - "health" ; - ; - . + + "GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database" . - - "http://purl.obolibrary.org/obo/epo.owl" . + + "New mutant phenotype data curation system in the Saccharomyces Genome Database" . - - "inactive" ; - "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens." ; - "eagle-i resource ontology" ; - ; - "information" ; - _:b224 ; - ; - . + + "Evolution of the Sequence Ontology terms and relationships." . -_:b224 "Marc Ciriello" ; - "Marc_Ciriello@hms.harvard.edu" . + + "The teleost anatomy ontology: anatomical representation for the genomics age" . - - "http://purl.obolibrary.org/obo/ero.owl" . + + "The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources" . - - "inactive" ; - "eVOC (Expressed Sequence Annotation for Humans)" ; - "anatomy and development" ; - _:b225 . + + "A gross anatomy ontology for hymenoptera" . -_:b225 "eVOC mailing list" ; - "evoc@sanbi.ac.za" . + + "Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community." . - - "inactive" ; - ; - "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase." ; - "Fly taxonomy" ; - "organisms" ; - _:b226 ; - ; - . + + "Toward an ontological treatment of disease and diagnosis" . -_:b226 "Clare Pilgrim" ; - "cp390@cam.ac.uk" . + + "The Rat Genome Database pathway portal." . - - "http://purl.obolibrary.org/obo/fbsp.owl" . + + "Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology" . - - "inactive" ; - "Influenza Ontology" ; - "health" ; - "http://purl.obolibrary.org/obo/flu/tracker" ; - _:b227 ; - ; - . + + "The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web" . -_:b227 "Burke Squires" ; - "burkesquires@gmail.com" . + + "Controlled vocabularies and semantics in systems biology" . - - "http://purl.obolibrary.org/obo/flu.owl" . + + "UniPathway: a resource for the exploration and annotation of metabolic pathways" . - - "inactive" ; - "Cereal Plant Gross Anatomy" ; - "anatomy and development" ; - _:b228 ; - . + + "The Virtual Fly Brain Browser and Query Interface" . -_:b228 "Plant Ontology Administrators" ; - "po-discuss@plantontology.org" . + + "Uberon, an integrative multi-species anatomy ontology" . - - "inactive" ; - "Habronattus courtship" ; - "organisms" ; - _:b229 ; - . + + "A strategy for building neuroanatomy ontologies" . -_:b229 "Peter Midford" ; - "peteremidford@yahoo.com" . + + "Three ontologies to define phenotype measurement data." . - - "inactive" ; - "Event (INOH pathway ontology)" ; - "chemistry and biochemistry" ; - . + + "Ontologies as integrative tools for plant science." . - - "inactive" ; - "Molecule role (INOH Protein name/family name ontology)" ; - "chemistry and biochemistry" ; - _:b230 ; - . + + "The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data" . -_:b230 "INOH curators" ; - "curator@inoh.org" . + + "A new ontology (structured hierarchy) of human developmental anatomy for the first 7 weeks (Carnegie stages 1-20)." . - - "inactive" ; - "Protein Domains" ; - "chemistry and biochemistry" ; - _:b231 ; - . + + "The Units Ontology: a tool for integrating units of measurement in science" . -_:b231 "InterPro Help" ; - "interhelp@ebi.ac.uk" . + + "The plant ontology as a tool for comparative plant anatomy and genomic analyses." . - - "inactive" ; - "An ontology representation of the LIPIDMAPS nomenclature classification." ; - "Lipid Ontology" ; - "chemistry and biochemistry" ; - _:b232 . + + "Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses" . -_:b232 "Christopher Baker" ; - "bakerc@unb.ca" . + + "The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary." . - - "inactive" ; - "Loggerhead nesting" ; - "organisms" ; - _:b233 ; - . + + "FYPO: The Fission Yeast Phenotype Ontology." . -_:b233 "Peter Midford" ; - "peteremidford@yahoo.com" . + + "EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update" . - - "inactive" ; - "Multiple alignment" ; - "chemistry and biochemistry" ; - _:b234 ; - . + + "The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications." . -_:b234 "Julie Thompson" ; - "julie@igbmc.u-strasbg.fr" . + + "The Drosophila phenotype ontology." . - - "inactive" ; - "Minimal anatomical terminology" ; - "anatomy and development" ; - _:b235 . + + "Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase." . -_:b235 "Jonathan Bard" ; - "j.bard@ed.ac.uk" . + + "The Drosophila anatomy ontology" . - - "inactive" ; - ; - "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes." ; - "Medaka fish anatomy and development" ; - "anatomy and development" ; - _:b236 ; - . + + "Variation Ontology for annotation of variation effects and mechanisms" . - - "Oryzias" . + + "Analyzing gene expression data in mice with the Neuro Behavior Ontology" . -_:b236 "Thorsten Henrich" ; - "henrich@embl.de" . + + "The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data." . - - "http://purl.obolibrary.org/obo/mfo.owl" . + + "Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD." . - - "inactive" ; - "An application ontology for use with miRNA databases." ; - "microRNA Ontology" ; - ; - "chemistry and biochemistry" ; - _:b237 ; - ; - . + + "The pathway ontology - updates and applications." . -_:b237 "Pantelis Topalis" ; - "topalis@imbb.forth.gr" . + + "Variation ontology: annotator guide" . - - "http://purl.obolibrary.org/obo/mirnao.owl" . + + "The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio." . - - "inactive" ; - "A standardized description of a microarray experiment in support of MAGE v.1." ; - "Microarray experimental conditions" ; - "investigations" ; - _:b238 ; - ; - ; - . + + "Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon" . -_:b238 "Chris Stoeckert" ; - "stoeckrt@pcbi.upenn.edu" . + + "Standardized description of scientific evidence using the Evidence Ontology (ECO)" . - - "http://purl.obolibrary.org/obo/mo.owl" . + + "The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation" . - - "inactive" ; - "Neuronal cell types" ; - "NIF Cell" ; - "anatomy and development" ; - _:b239 ; - . + + "Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology." . -_:b239 "Fahim Imam" ; - "smtifahim@gmail.com" . + + "The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology" . - - "inactive" ; - "NIF Dysfunction" ; - "health" ; - _:b240 ; - . + + "Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data" . -_:b240 "Fahim Imam" ; - "smtifahim@gmail.com" . + + "Types and effects of protein variations" . - - "inactive" ; - "NIF Gross Anatomy" ; - "anatomy and development" ; - _:b241 ; - . + + "Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens" . -_:b241 "Fahim Imam" ; - "smtifahim@gmail.com" . + + "CLO: The Cell Line Ontology" . - - "inactive" ; - "Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation." ; - "NMR-instrument specific component of metabolomics investigations" ; - "investigations" ; - _:b242 ; - ; - ; - . + + "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations" . -_:b242 "Schober Daniel" ; - "schober@imbi.uni-freiburg.de" . + + "Biomarkers in the Ontology for General Medical Science" . - - "http://purl.obolibrary.org/obo/nmr.owl" . + + "The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease." . - - "inactive" ; - "OBO relationship types (legacy)" ; - "upper" ; - _:b243 ; - . + + "DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug–Drug Interactions and Their Mechanisms." . -_:b243 "Chris Mungall" ; - "cjmungall@lbl.gov" . + + "Mouse Anatomy Ontologies: Enhancements and Tools for Exploring and Integrating Biomedical Data" . - - "inactive" ; - "An ontology that formalizes the genomic element by defining an upper class genetic interval" ; - "Ontology for genetic interval" ; - "chemistry and biochemistry" ; - "https://code.google.com/p/ontology-for-genetic-interval/issues/list" ; - _:b244 ; - ; - . + + "ChEBI in 2016: Improved services and an expanding collection of metabolites." . -_:b244 "Asiyah Yu Lin" ; - "linikujp@gmail.com" . + + "The Ontology for Biomedical Investigations" . - - "http://purl.obolibrary.org/obo/ogi.owl" . + + "The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability." . -_:b104 "Mathias Brochhausen" ; - "mbrochhausen@gmail.com" . + + "The ontology of medically related social entities: recent developments" . - - "http://purl.obolibrary.org/obo/omiabis.owl" . + + "The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants" . - - "inactive" ; - ; - "Plant Anatomy Ontology" ; - "anatomy and development" ; - _:b245 ; - . + + "Protein Ontology (PRO): enhancing and scaling up the representation of protein entities" . -_:b245 "Pankaj Jaiswal" ; - "jaiswalp@science.oregonstate.edu" . + + "The anatomy of phenotype ontologies: principles, properties and applications" . - - "inactive" ; - ; - "Platynereis stage ontology" ; - "anatomy and development" ; - _:b246 ; - . + + "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics." . - - "Platynereis" . + + "A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog" . -_:b246 "Thorsten Henrich" ; - "henrich@embl.de" . + + "ONS: an ontology for a standardized description of interventions and observational studies in nutrition" . - - "inactive" ; - ; - "Plant Growth and Development Stage" ; - "anatomy and development" ; - _:b247 ; - . + + "Victors: a web-based knowledge base of virulence factors in human and animal pathogens" . -_:b247 "Plant Ontology Administrators" ; - "po-discuss@plantontology.org" . + + "ECO, the Evidence & Conclusion Ontology: community standard for evidence information." . - - "inactive" ; - "Plasmodium life cycle" ; - "anatomy and development" ; - _:b248 ; - . + + "Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources." . -_:b248 "Matt Berriman" ; - "mb4@sanger.ac.uk" . + + "FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration" . - - "inactive" ; - "Proteomics data and process provenance" ; - "chemistry and biochemistry" ; - _:b249 ; - . + + "WormBase: a modern Model Organism Information Resource" . -_:b249 "Satya S. Sahoo" ; - "satya30@uga.edu" . + + "CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database." . - - "inactive" ; - "For the description of covalent bonds in proteins." ; - "Protein covalent bond" ; - "chemistry and biochemistry" ; - _:b250 ; - . + + "The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation." . -_:b250 "John Garavelli" ; - "john.garavelli@ebi.ac.uk" . + + "Experiment design driven FAIRification of omics data matrices, an exemplar" . - - "inactive" ; - ; - "Subcellular anatomy ontology" ; - "anatomy and development" ; - _:b251 ; - . + + "dictyBase and the Dicty Stock Center (version 2.0) - a progress report" . -_:b251 "Stephen Larson" ; - "slarson@ncmir.ucsd.edu" . + + "Semantic concept schema of the linear mixed model of experimental observations" . - - "inactive" ; - "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments." ; - "Sample processing and separation techniques" ; - "investigations" ; - _:b252 ; - ; - ; - . + + "FOBI: an ontology to represent food intake data and associate it with metabolomic data" . -_:b252 "SEP developers via the PSI and MSI mailing lists" ; - "psidev-gps-dev@lists.sourceforge.net" . + + "Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology" . - - "http://purl.obolibrary.org/obo/sep.owl" . + + "Ontological approach to the knowledge systematization of a toxic process and toxic course representation framework for early drug risk management" . - - "inactive" ; - ; - "Suggested Ontology for Pharmacogenomics" ; - "chemistry and biochemistry" ; - _:b253 ; - . + + "The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications." . -_:b253 "Adrien Coulet" ; - "Adrien.Coulet@loria.fr" . + + "The Gene Ontology resource: enriching a GOld mine" . - - "inactive" ; - ; - "Terminology of Anatomy of Human Embryology" ; - "anatomy and development" ; - _:b254 . + + "The Infectious Disease Ontology in the age of COVID-19" . -_:b254 "Pierre Sprumont" ; - "pierre.sprumont@unifr.ch" . + + "Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms" . - - "inactive" ; - ; - "Terminology of Anatomy of Human Histology" ; - "health" ; - _:b255 . + + "The fobitools framework: the first steps towards food enrichment analysis" . -_:b255 "Pierre Sprumont" ; - "pierre.sprumont@unifr.ch" . + + "The Human Disease Ontology 2022 update" . - - "inactive" ; - ; - "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa" ; - "Teleost Anatomy Ontology" ; - ; - ; - "anatomy and development" ; - _:b256 ; - ; - . + + "PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions" . - - "The teleost anatomy ontology: anatomical representation for the genomics age" . + + "The Prescription of Drug Ontology 2.0 (PDRO): More Than the Sum of Its Parts" . -_:b256 "Wasila Dahdul" ; - "wasila.dahdul@usd.edu" . + + "ECO: the Evidence and Conclusion Ontology, an update for 2022." . - - "http://purl.obolibrary.org/obo/tao.owl" . + + "ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements" . - - "inactive" ; - "Vertebrate Homologous Ontology Group Ontology" ; - "anatomy and development" ; - . + + "The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development." . - - "http://purl.obolibrary.org/obo/vhog.owl" . + + "The Sickle Cell Disease Ontology: recent development and expansion of the universal sickle cell knowledge representation." . - - "inactive" ; - ; - "Vertebrate skeletal anatomy ontology." ; - "Vertebrate Skeletal Anatomy Ontology-" ; - "anatomy and development" ; - _:b257 ; - ; - ; - . + + "A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology" . - - "Vertebrata" . + + "Core reference ontology for individualized exercise prescription" . -_:b257 "Wasila Dahdul" ; - "wasila.dahdul@usd.edu" . + + "Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery" . - - "http://purl.obolibrary.org/obo/vsao.owl" . + + "An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature" . - - "inactive" ; - ; - "Yeast phenotypes" ; - "phenotype" ; - _:b258 ; - . + + "NSF DEB-0956049" . - - "Saccharomyces cerevisiae" . + + "NSF ABI-1356381" . -_:b258 "Mike Cherry" ; - "cherry@genome.stanford.edu" . + + "NSF ABI-1458400" . - - "inactive" ; - ; - "Maize gross anatomy" ; - "anatomy and development" ; - _:b259 ; - . + + "OntoBee"; + "OntoBee" . - - "Zea" . + + "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species" . -_:b259 "Leszek Vincent" ; - "Leszek@missouri.edu" . + + "Phenotype Ontologies Traversing All The Organisms (POTATO) workshop: 2nd edition" . diff --git a/registry/ontologies.yml b/registry/ontologies.yml index 86be33142..03237f926 100644 --- a/registry/ontologies.yml +++ b/registry/ontologies.yml @@ -300,7 +300,6 @@ ontologies: domain: organisms homepage: https://github.com/BiodiversityOntologies/bco id: bco - in_foundry: false layout: ontology_detail license: label: CC0 1.0 @@ -335,7 +334,6 @@ ontologies: domain: upper homepage: http://ifomis.org/bfo/ id: bfo - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -531,7 +529,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://www.ebi.ac.uk/chebi id: chebi - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -1412,7 +1409,6 @@ ontologies: domain: health homepage: https://disease-ontology.org id: doid - in_foundry_order: 1 layout: ontology_detail license: label: CC0 1.0 @@ -2764,7 +2760,6 @@ ontologies: domain: biological systems homepage: http://geneontology.org/ id: go - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -4443,7 +4438,6 @@ ontologies: domain: information technology homepage: https://github.com/obcs/obcs id: obcs - in_foundry: false layout: ontology_detail license: label: CC BY 4.0 @@ -4483,7 +4477,6 @@ ontologies: domain: investigations homepage: http://obi-ontology.org id: obi - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -4789,7 +4782,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://omit.cis.usouthal.edu/ id: omit - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -5274,7 +5266,6 @@ ontologies: domain: phenotype homepage: https://github.com/pato-ontology/pato/ id: pato - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -5327,7 +5318,6 @@ ontologies: domain: chemistry and biochemistry homepage: https://github.com/InSilicoVida-Research-Lab/pbpko id: pbpko - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -5628,7 +5618,6 @@ ontologies: domain: anatomy and development homepage: http://browser.planteome.org/amigo id: po - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -5761,7 +5750,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://proconsortium.org id: pr - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 4.0 @@ -6291,7 +6279,6 @@ ontologies: domain: information technology homepage: http://stato-ontology.org/ id: stato - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -6866,7 +6853,6 @@ ontologies: domain: phenotype homepage: https://github.com/bio-ontology-research-group/unit-ontology id: uo - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -7308,7 +7294,6 @@ ontologies: domain: anatomy and development homepage: http://www.xenbase.org/anatomy/xao.do?method=display id: xao - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -7493,7 +7478,6 @@ ontologies: domain: anatomy and development homepage: https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources id: zfa - in_foundry_order: 1 layout: ontology_detail license: label: CC BY 3.0 @@ -7533,7 +7517,6 @@ ontologies: domain: anatomy and development homepage: https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources id: zfs - in_foundry: false layout: ontology_detail license: label: CC BY 3.0 @@ -7971,7 +7954,6 @@ ontologies: domain: chemistry and biochemistry homepage: http://www.ebi.ac.uk/chebi id: fix - in_foundry: false layout: ontology_detail ontology_purl: http://purl.obolibrary.org/obo/fix.owl products: @@ -8587,7 +8569,6 @@ ontologies: domain: anatomy and development homepage: https://github.com/obi-bcgo/bcgo id: bcgo - in_foundry: false is_obsolete: true layout: ontology_detail license: @@ -8802,7 +8783,6 @@ ontologies: domain: health homepage: https://code.google.com/p/epidemiology-ontology/ id: epo - in_foundry: false is_obsolete: true layout: ontology_detail products: @@ -8868,7 +8848,6 @@ ontologies: domain: health homepage: http://purl.obolibrary.org/obo/flu/ id: flu - in_foundry: false is_obsolete: true layout: ontology_detail products: @@ -8932,7 +8911,6 @@ ontologies: description: An ontology representation of the LIPIDMAPS nomenclature classification. domain: chemistry and biochemistry id: lipro - in_foundry: false is_obsolete: true layout: ontology_detail tags: diff --git a/tests/test_integrity.py b/tests/test_integrity.py index cf8a8ef80..49148a278 100644 --- a/tests/test_integrity.py +++ b/tests/test_integrity.py @@ -167,10 +167,9 @@ def assert_valid_publication_id(self, publication, msg=None): ) def test_schema_mandatory(self): - """Test all things in schema marked as error are also in the required list.""" """Test all things in schema marked as error/warning are also in the required list.""" # why is there a mismatch between their levels and required status? - skip_keys = {"in_foundry", "products", "usages"} + skip_keys = {"products", "usages"} schema = json.loads(SCHEMA_PATH.read_text()) required: Set[str] = set(schema["required"]) high_level: Set[str] = { diff --git a/util/auto-foundry-check.py b/util/auto-foundry-check.py index 4e0062e68..3a7aa6fea 100755 --- a/util/auto-foundry-check.py +++ b/util/auto-foundry-check.py @@ -1,4 +1,11 @@ -#!/usr/bin/env python3 +#!/usr/bin/env -S uv run --script + +# /// script +# requires-python = ">=3.10" +# dependencies = [ +# "pyyaml>=6.0.3", +# ] +# /// # Read the ontologies.yml file # check foundry criteria @@ -28,8 +35,6 @@ template = "- {ontology} ({id}): [{title}]({link})\n" -IN_FOUNDRY_ORDER = "in_foundry_order" - def main(): parser = argparse.ArgumentParser(description="Extract foundry data") @@ -72,7 +77,6 @@ def main(): def review_ontology(ont): inject(ont) fails = [] - is_foundry = IN_FOUNDRY_ORDER in ont open_license = False if "license" in ont: lurl = ont["license"]["url"] @@ -87,7 +91,7 @@ def review_ontology(ont): fails.append(FAIL_TRACKER) if "usages" not in ont: fails.append(FAIL_USERS) - conflict = is_foundry and len(fails) > 0 + conflict = len(fails) > 0 return dict(id=ont["id"], fails=fails, conflict=conflict) diff --git a/util/extract-metadata.py b/util/extract-metadata.py index 8656d4d97..33890389e 100755 --- a/util/extract-metadata.py +++ b/util/extract-metadata.py @@ -222,8 +222,6 @@ def decorate_metadata(objs): for product in obj["products"]: decorate_entry(product) - objs = [] - foundry = [] library = [] obsolete = [] cfg = {} @@ -231,14 +229,12 @@ def decorate_metadata(objs): with open(args.include, "r") as f: cfg = yaml.load(f.read(), Loader=yaml.SafeLoader) for fn in args.files: - (obj, md) = load_md(fn) + obj, _md = load_md(fn) if obj.get("is_obsolete"): obsolete.append(obj) - elif "in_foundry_order" in obj: - foundry.append(obj) else: library.append(obj) - objs = foundry + library + obsolete + objs = library + obsolete cfg["ontologies"] = objs decorate_metadata(objs) with open(args.output, "w") as f: diff --git a/util/make-shacl-prefixes.py b/util/make-shacl-prefixes.py index 312cfff5b..10045358a 100755 --- a/util/make-shacl-prefixes.py +++ b/util/make-shacl-prefixes.py @@ -1,13 +1,18 @@ -#!/usr/bin/env python3 +#!/usr/bin/env -S uv run --script + +# /// script +# requires-python = ">=3.10" +# dependencies = [ +# "pyyaml>=6.0.3", +# ] +# /// -import csv -import sys from argparse import ArgumentParser import yaml -def main(args): +def main(): """ Takes ontologies.yml file and makes a triple file with SHACL prefixes. @@ -55,4 +60,4 @@ def main(args): if __name__ == "__main__": - main(sys.argv) + main() diff --git a/util/processor.py b/util/processor.py index 7967c84ec..a35ef6bfc 100755 --- a/util/processor.py +++ b/util/processor.py @@ -1,7 +1,15 @@ -#!/usr/bin/env python3 +#!/usr/bin/env -S uv run --script + +# /// script +# requires-python = ">=3.10" +# dependencies = [ +# "pyyaml>=6.0.3", +# "requests>=2.33.1", +# "sparqlwrapper>=2.0.0", +# ] +# /// import argparse -import datetime import logging import sys import time diff --git a/util/schema/registry_schema.json b/util/schema/registry_schema.json index ca2acaf07..ea5061a4b 100644 --- a/util/schema/registry_schema.json +++ b/util/schema/registry_schema.json @@ -151,16 +151,6 @@ "type": "string", "pattern": "^[0-9a-z_]+$" }, - "in_foundry": { - "suggest": false, - "level": "warning", - "description": "'in_foundry' is a recommended field. The value is a boolean indicating whether the ontology is in the Foundry collection.", - "type": "boolean", - "default": false - }, - "in_foundry_order": { - "suggest": false - }, "is_obsolete": { "suggest": false, "level": "info", diff --git a/util/sort-ontologies.py b/util/sort-ontologies.py index 9e23555bc..11ab99c88 100755 --- a/util/sort-ontologies.py +++ b/util/sort-ontologies.py @@ -1,4 +1,11 @@ -#!/usr/bin/env python3 +#!/usr/bin/env -S uv run --script + +# /// script +# requires-python = ">=3.10" +# dependencies = [ +# "pyyaml>=6.0.3", +# ] +# /// import csv import sys @@ -7,7 +14,7 @@ import yaml -def main(args): +def main(): parser = ArgumentParser( description=""" Takes a YAML file containing information for various ontologies and a metadata file specifying @@ -89,4 +96,4 @@ def write_data(data, output): if __name__ == "__main__": - main(sys.argv) + main() diff --git a/util/validate-metadata.py b/util/validate-metadata.py index 502ea44a5..00ad14475 100755 --- a/util/validate-metadata.py +++ b/util/validate-metadata.py @@ -1,4 +1,13 @@ -#!/usr/bin/env python3 +#!/usr/bin/env -S uv run --script + +# /// script +# requires-python = ">=3.10" +# dependencies = [ +# "jsonschema==3.0.2", +# "pyyaml>=6.0.3", +# "setuptools<81.0.0", +# ] +# /// import json import re @@ -120,7 +129,6 @@ def validate_metadata(item, schema): results = {} # determine how to sort this item in the grid: - results["foundry"] = False # True if item.get("in_foundry_order") == 1 else False results["obsolete"] = True if item.get("is_obsolete") is True else False # if there is no status, put them at the bottom with inactive: results["ontology_status"] = ( @@ -274,12 +282,6 @@ def sort_grid(metadata_grid): ontology_status = results["ontology_status"] validation_status = results["validation_status"] - # foundry ontologies are displayed first - # they must be active - if results["foundry"]: - foundry[validation_status].append(ont_id) - continue - # obsolete ontologies are displayed last # they are always inactive # (inactive does not mean obsolete) diff --git a/util/yaml2json.py b/util/yaml2json.py index dac112750..4c836300a 100755 --- a/util/yaml2json.py +++ b/util/yaml2json.py @@ -1,4 +1,11 @@ -#!/usr/bin/env python3 +#!/usr/bin/env -S uv run --script + +# /// script +# requires-python = ">=3.10" +# dependencies = [ +# "pyyaml>=6.0.3", +# ] +# /// import json from argparse import ArgumentParser