set colorbar values based on min max of data

Author: SarthakJariwala

PythonGUI_apps/FLIM_analysis/FLIM_plot.py

@@ -270,6 +270,8 @@ def on_analyze_lifetime(self):
 
     def export_window(self):
         self.export_window = ExportFigureWindow()
+        self.export_window.ui.vmin_spinBox.setValue(np.min(self.intensity_sums))
+        self.export_window.ui.vmax_spinBox.setValue(np.max(self.intensity_sums))
         self.export_window.export_fig_signal.connect(self.save_intensities_image)
 
     def save_intensities_image(self):
@@ -286,7 +288,10 @@ def save_intensities_image(self):
                 label = str(self.export_window.ui.cbar_label.text())
             else:
                 label = "PL Intensity (a.u.)"
-            cpm.plot_confocal(self.intensity_sums, FLIM_adjust=False, stepsize=np.abs(self.x_step_size),cmap=colormap, cbar_label=label,vmin=self.export_window.ui.vmin_spinBox.value(), vmax=self.export_window.ui.vmax_spinBox.value())
+            cpm.plot_confocal(self.intensity_sums, FLIM_adjust=False, 
+                              stepsize=np.abs(self.x_step_size),cmap=colormap, 
+                              cbar_label=label, vmin=self.export_window.ui.vmin_spinBox.value(), 
+                              vmax=self.export_window.ui.vmax_spinBox.value())
             plt.savefig(save_to, bbox_inches='tight', dpi=300)
         except Exception as e:
             print(format(e))

PythonGUI_apps/Spectrum_analysis/Spectra_plot_fit.py

@@ -528,7 +528,7 @@ def pub_ready_plot_export(self):
                     param_selection = str(self.ui.comboBox.currentText())
                     if param_selection == 'pk_pos': label = 'PL Peak Position (n.m.)'
                     elif param_selection == 'fwhm': label = 'PL FWHM (n.m.)'
-                    cpm.plot_confocal(self.img, figsize=(10,10), stepsize = data['Scan Parameters']['X step size (um)'], cmap=colormap, cbar_label=label,
+                    cpm.plot_confocal(self.img, stepsize = data['Scan Parameters']['X step size (um)'], cmap=colormap, cbar_label=label,
                                       vmin=self.export_window.ui.vmin_spinBox.value(), vmax=self.export_window.ui.vmax_spinBox.value())
                 elif str(self.export_window.ui.dataChannel_comboBox.currentText()) == "Raw":
                     cpm.plot_confocal(self.sums, figsize=(10,10), stepsize = data['Scan Parameters']['X step size (um)'], cmap=colormap,