Skip to content

Commit 2722a50

Browse files
github-actions[bot]actions-user
github-actions[bot]
and
actions-user
authored
🚀 Automatically rebuilt derived files (OBOFoundry#2484)
Co-authored-by: GitHub Action <action@github.com>
1 parent 0f04251 commit 2722a50

6 files changed

Lines changed: 1598 additions & 1598 deletions

File tree

‎_config.yml‎

Lines changed: 49 additions & 49 deletions
Original file line numberDiff line numberDiff line change
@@ -1947,53 +1947,6 @@ ontologies:
19471947
- disease
19481948
title: Epilepsy Ontology
19491949
tracker: https://github.com/SCAI-BIO/EpilepsyOntology/issues
1950-
- activity_status: active
1951-
contact:
1952-
email: jiezheng@pennmedicine.upenn.edu
1953-
github: zhengj2007
1954-
label: Jie Zheng
1955-
orcid: 0000-0002-2999-0103
1956-
depicted_by: https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png
1957-
description: An ontology is developed to support Eukaryotic Pathogen, Host & Vector
1958-
Genomics Resource (VEuPathDB; https://veupathdb.org).
1959-
domain: organisms
1960-
homepage: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
1961-
id: eupath
1962-
layout: ontology_detail
1963-
license:
1964-
label: CC BY 4.0
1965-
logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
1966-
url: http://creativecommons.org/licenses/by/4.0/
1967-
ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
1968-
preferredPrefix: EUPATH
1969-
products:
1970-
- id: eupath.owl
1971-
ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
1972-
publications:
1973-
- id: https://doi.org/10.5281/zenodo.6685957
1974-
title: Malaria study data integration and information retrieval based on OBO Foundry
1975-
ontologies.
1976-
repository: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
1977-
tags:
1978-
- functional genomics
1979-
- population biology
1980-
- clinical epidemiology
1981-
- microbiomes
1982-
title: VEuPathDB ontology
1983-
tracker: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues
1984-
usages:
1985-
- description: The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen,
1986-
Vector & Host Informatics Resources) covers both functional genomics and population
1987-
biology.
1988-
type: annotation and query
1989-
user: https://veupathdb.org
1990-
- description: The VEuPathDB ontology is used in the clinical epidemiology resources.
1991-
type: annotation and query
1992-
user: https://clinepidb.org
1993-
- description: The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology
1994-
platform for integrating, mining and analyzing microbiome experiments.
1995-
type: annotation and query
1996-
user: https://microbiomedb.org
19971950
- activity_status: active
19981951
contact:
19991952
email: annethessen@gmail.com
@@ -3023,7 +2976,7 @@ ontologies:
30232976
method: owl2obo
30242977
source_url: http://purl.obolibrary.org/obo/iao.owl
30252978
contact:
3026-
email: jiezheng@pennmedicine.upenn.edu
2979+
email: zhengj2007@gmail.com
30272980
github: zhengj2007
30282981
label: Jie Zheng
30292982
orcid: 0000-0002-2999-0103
@@ -5050,7 +5003,7 @@ ontologies:
50505003
tracker: https://github.com/OOSTT/OOSTT/issues
50515004
- activity_status: active
50525005
contact:
5053-
email: jiezheng@pennmedicine.upenn.edu
5006+
email: zhengj2007@gmail.com
50545007
github: zhengj2007
50555008
label: Jie Zheng
50565009
orcid: 0000-0002-2999-0103
@@ -7967,6 +7920,53 @@ ontologies:
79677920
title: Types and effects of protein variations
79687921
title: Variation Ontology
79697922
tracker: http://variationontology.org/instructions.shtml
7923+
- activity_status: inactive
7924+
contact:
7925+
email: jiezhen@med.umich.edu
7926+
github: zhengj2007
7927+
label: Jie Zheng
7928+
orcid: 0000-0002-2999-0103
7929+
depicted_by: https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png
7930+
description: An ontology is developed to support Eukaryotic Pathogen, Host & Vector
7931+
Genomics Resource (VEuPathDB; https://veupathdb.org).
7932+
domain: organisms
7933+
homepage: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
7934+
id: eupath
7935+
layout: ontology_detail
7936+
license:
7937+
label: CC BY 4.0
7938+
logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
7939+
url: http://creativecommons.org/licenses/by/4.0/
7940+
ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
7941+
preferredPrefix: EUPATH
7942+
products:
7943+
- id: eupath.owl
7944+
ontology_purl: http://purl.obolibrary.org/obo/eupath.owl
7945+
publications:
7946+
- id: https://doi.org/10.5281/zenodo.6685957
7947+
title: Malaria study data integration and information retrieval based on OBO Foundry
7948+
ontologies.
7949+
repository: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
7950+
tags:
7951+
- functional genomics
7952+
- population biology
7953+
- clinical epidemiology
7954+
- microbiomes
7955+
title: VEuPathDB ontology
7956+
tracker: https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues
7957+
usages:
7958+
- description: The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen,
7959+
Vector & Host Informatics Resources) covers both functional genomics and population
7960+
biology.
7961+
type: annotation and query
7962+
user: https://veupathdb.org
7963+
- description: The VEuPathDB ontology is used in the clinical epidemiology resources.
7964+
type: annotation and query
7965+
user: https://clinepidb.org
7966+
- description: The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology
7967+
platform for integrating, mining and analyzing microbiome experiments.
7968+
type: annotation and query
7969+
user: https://microbiomedb.org
79707970
- activity_status: inactive
79717971
build:
79727972
method: obo2owl

‎registry/obo_prefixes.ttl‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -48,7 +48,6 @@
4848
,[ sh:prefix "EMAPA" ; sh:namespace "http://purl.obolibrary.org/obo/EMAPA_"]
4949
,[ sh:prefix "ENVO" ; sh:namespace "http://purl.obolibrary.org/obo/ENVO_"]
5050
,[ sh:prefix "EPIO" ; sh:namespace "http://purl.obolibrary.org/obo/EPIO_"]
51-
,[ sh:prefix "EUPATH" ; sh:namespace "http://purl.obolibrary.org/obo/EUPATH_"]
5251
,[ sh:prefix "ExO" ; sh:namespace "http://purl.obolibrary.org/obo/ExO_"]
5352
,[ sh:prefix "FAO" ; sh:namespace "http://purl.obolibrary.org/obo/FAO_"]
5453
,[ sh:prefix "FBbt" ; sh:namespace "http://purl.obolibrary.org/obo/FBbt_"]
@@ -188,6 +187,7 @@
188187
,[ sh:prefix "REX" ; sh:namespace "http://purl.obolibrary.org/obo/REX_"]
189188
,[ sh:prefix "SIBO" ; sh:namespace "http://purl.obolibrary.org/obo/SIBO_"]
190189
,[ sh:prefix "VariO" ; sh:namespace "http://purl.obolibrary.org/obo/VariO_"]
190+
,[ sh:prefix "EUPATH" ; sh:namespace "http://purl.obolibrary.org/obo/EUPATH_"]
191191
,[ sh:prefix "FBbi" ; sh:namespace "http://purl.obolibrary.org/obo/FBbi_"]
192192
,[ sh:prefix "MFMO" ; sh:namespace "http://purl.obolibrary.org/obo/MFMO_"]
193193
,[ sh:prefix "MICRO" ; sh:namespace "http://purl.obolibrary.org/obo/MICRO_"]

‎registry/ontologies.jsonld‎

Lines changed: 62 additions & 62 deletions
Original file line numberDiff line numberDiff line change
@@ -2738,66 +2738,6 @@
27382738
"title": "Epilepsy Ontology",
27392739
"tracker": "https://github.com/SCAI-BIO/EpilepsyOntology/issues"
27402740
},
2741-
{
2742-
"activity_status": "active",
2743-
"contact": {
2744-
"email": "jiezheng@pennmedicine.upenn.edu",
2745-
"github": "zhengj2007",
2746-
"label": "Jie Zheng",
2747-
"orcid": "0000-0002-2999-0103"
2748-
},
2749-
"depicted_by": "https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png",
2750-
"description": "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).",
2751-
"domain": "organisms",
2752-
"homepage": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
2753-
"id": "eupath",
2754-
"layout": "ontology_detail",
2755-
"license": {
2756-
"label": "CC BY 4.0",
2757-
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
2758-
"url": "http://creativecommons.org/licenses/by/4.0/"
2759-
},
2760-
"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl",
2761-
"preferredPrefix": "EUPATH",
2762-
"products": [
2763-
{
2764-
"id": "eupath.owl",
2765-
"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl"
2766-
}
2767-
],
2768-
"publications": [
2769-
{
2770-
"id": "https://doi.org/10.5281/zenodo.6685957",
2771-
"title": "Malaria study data integration and information retrieval based on OBO Foundry ontologies."
2772-
}
2773-
],
2774-
"repository": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
2775-
"tags": [
2776-
"functional genomics",
2777-
"population biology",
2778-
"clinical epidemiology",
2779-
"microbiomes"
2780-
],
2781-
"title": "VEuPathDB ontology",
2782-
"tracker": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues",
2783-
"usages": [
2784-
{
2785-
"description": "The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen, Vector & Host Informatics Resources) covers both functional genomics and population biology.",
2786-
"type": "annotation and query",
2787-
"user": "https://veupathdb.org"
2788-
},
2789-
{
2790-
"description": "The VEuPathDB ontology is used in the clinical epidemiology resources.",
2791-
"type": "annotation and query",
2792-
"user": "https://clinepidb.org"
2793-
},
2794-
{
2795-
"description": "The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology platform for integrating, mining and analyzing microbiome experiments.",
2796-
"type": "annotation and query",
2797-
"user": "https://microbiomedb.org"
2798-
}
2799-
]
2800-
},
28012741
{
28022742
"activity_status": "active",
28032743
"contact": {
@@ -4253,7 +4193,7 @@
42534193
"source_url": "http://purl.obolibrary.org/obo/iao.owl"
42544194
},
42554195
"contact": {
4256-
"email": "jiezheng@pennmedicine.upenn.edu",
4196+
"email": "zhengj2007@gmail.com",
42574197
"github": "zhengj2007",
42584198
"label": "Jie Zheng",
42594199
"orcid": "0000-0002-2999-0103"
@@ -7021,7 +6961,7 @@
70216961
{
70226962
"activity_status": "active",
70236963
"contact": {
7024-
"email": "jiezheng@pennmedicine.upenn.edu",
6964+
"email": "zhengj2007@gmail.com",
70256965
"github": "zhengj2007",
70266966
"label": "Jie Zheng",
70276967
"orcid": "0000-0002-2999-0103"
@@ -11168,6 +11108,66 @@
1116811108
"title": "Variation Ontology",
1116911109
"tracker": "http://variationontology.org/instructions.shtml"
1117011110
},
11111+
{
11112+
"activity_status": "inactive",
11113+
"contact": {
11114+
"email": "jiezhen@med.umich.edu",
11115+
"github": "zhengj2007",
11116+
"label": "Jie Zheng",
11117+
"orcid": "0000-0002-2999-0103"
11118+
},
11119+
"depicted_by": "https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png",
11120+
"description": "An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).",
11121+
"domain": "organisms",
11122+
"homepage": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
11123+
"id": "eupath",
11124+
"layout": "ontology_detail",
11125+
"license": {
11126+
"label": "CC BY 4.0",
11127+
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
11128+
"url": "http://creativecommons.org/licenses/by/4.0/"
11129+
},
11130+
"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl",
11131+
"preferredPrefix": "EUPATH",
11132+
"products": [
11133+
{
11134+
"id": "eupath.owl",
11135+
"ontology_purl": "http://purl.obolibrary.org/obo/eupath.owl"
11136+
}
11137+
],
11138+
"publications": [
11139+
{
11140+
"id": "https://doi.org/10.5281/zenodo.6685957",
11141+
"title": "Malaria study data integration and information retrieval based on OBO Foundry ontologies."
11142+
}
11143+
],
11144+
"repository": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology",
11145+
"tags": [
11146+
"functional genomics",
11147+
"population biology",
11148+
"clinical epidemiology",
11149+
"microbiomes"
11150+
],
11151+
"title": "VEuPathDB ontology",
11152+
"tracker": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues",
11153+
"usages": [
11154+
{
11155+
"description": "The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen, Vector & Host Informatics Resources) covers both functional genomics and population biology.",
11156+
"type": "annotation and query",
11157+
"user": "https://veupathdb.org"
11158+
},
11159+
{
11160+
"description": "The VEuPathDB ontology is used in the clinical epidemiology resources.",
11161+
"type": "annotation and query",
11162+
"user": "https://clinepidb.org"
11163+
},
11164+
{
11165+
"description": "The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology platform for integrating, mining and analyzing microbiome experiments.",
11166+
"type": "annotation and query",
11167+
"user": "https://microbiomedb.org"
11168+
}
11169+
]
11170+
},
1117111171
{
1117211172
"activity_status": "inactive",
1117311173
"build": {

0 commit comments

Comments
 (0)