Skip to content

Commit 8aa2461

Browse files
committed
reorder OSS: released projects first, add KinBiont.jl
1 parent 7fbf0ee commit 8aa2461

2 files changed

Lines changed: 29 additions & 13 deletions

File tree

index.html

Lines changed: 25 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -1056,6 +1056,31 @@ <h2 class="section-title" data-i18n="services_title">Three modes of engagement</
10561056
<h2 class="section-title" data-i18n="oss_title">Lab tools, built in public</h2>
10571057
<p class="section-intro" data-i18n="oss_intro">An ecosystem of open-source software for wet lab automation and bioinformatics — developed in active collaboration with the Pinheiro Group at Human Technopole.</p>
10581058
<div class="oss-grid">
1059+
<div class="oss-card">
1060+
<span class="oss-status" style="background:rgba(0,200,100,0.12);color:#00c864;border-color:rgba(0,200,100,0.25);" data-i18n="oss_released">Released</span>
1061+
<div class="oss-name">densitree</div>
1062+
<div class="oss-desc" data-i18n="densitree_desc">Density-normalized clustering with minimum spanning tree construction for high-dimensional data. A state-of-the-art SPADE implementation that outperforms FlowSOM and PhenoGraph on standard benchmarks — usable for cytometry, single-cell, and any point-cloud data with imbalanced density.</div>
1063+
<div class="tags">
1064+
<span class="tag">Python</span>
1065+
<span class="tag">Clustering</span>
1066+
<span class="tag">SPADE</span>
1067+
<span class="tag">Cytometry</span>
1068+
<span class="tag">scikit-learn</span>
1069+
</div>
1070+
<a class="oss-link" href="https://densitree.fuzue.tech" target="_blank">densitree.fuzue.tech →</a>
1071+
</div>
1072+
<div class="oss-card">
1073+
<span class="oss-status" style="background:rgba(0,200,100,0.12);color:#00c864;border-color:rgba(0,200,100,0.25);" data-i18n="oss_released">Released</span>
1074+
<div class="oss-name">KinBiont.jl</div>
1075+
<div class="oss-desc" data-i18n="kinbiont_desc">An ecosystem of numerical methods for microbial kinetics data analysis — from preprocessing to result interpretation. Covers growth curve fitting, model selection, segmentation, and comparative analysis across experimental conditions. Developed with the Pinheiro Group at Human Technopole.</div>
1076+
<div class="tags">
1077+
<span class="tag">Julia</span>
1078+
<span class="tag">Microbial growth</span>
1079+
<span class="tag">Kinetics</span>
1080+
<span class="tag">Model fitting</span>
1081+
</div>
1082+
<a class="oss-link" href="https://github.com/pinheiroGroup/KinBiont.jl" target="_blank">github.com/pinheiroGroup/KinBiont.jl →</a>
1083+
</div>
10591084
<div class="oss-card">
10601085
<span class="oss-status" data-i18n="oss_status">In development</span>
10611086
<div class="oss-name">GUIbiont</div>
@@ -1092,19 +1117,6 @@ <h2 class="section-title" data-i18n="oss_title">Lab tools, built in public</h2>
10921117
</div>
10931118
<a class="oss-link" href="https://github.com/fuzue" target="_blank">github.com/fuzue →</a>
10941119
</div>
1095-
<div class="oss-card">
1096-
<span class="oss-status" style="background:rgba(0,200,100,0.12);color:#00c864;border-color:rgba(0,200,100,0.25);" data-i18n="oss_released">Released</span>
1097-
<div class="oss-name">densitree</div>
1098-
<div class="oss-desc" data-i18n="densitree_desc">Density-normalized clustering with minimum spanning tree construction for high-dimensional data. A state-of-the-art SPADE implementation that outperforms FlowSOM and PhenoGraph on standard benchmarks — usable for cytometry, single-cell, and any point-cloud data with imbalanced density.</div>
1099-
<div class="tags">
1100-
<span class="tag">Python</span>
1101-
<span class="tag">Clustering</span>
1102-
<span class="tag">SPADE</span>
1103-
<span class="tag">Cytometry</span>
1104-
<span class="tag">scikit-learn</span>
1105-
</div>
1106-
<a class="oss-link" href="https://densitree.fuzue.tech" target="_blank">densitree.fuzue.tech →</a>
1107-
</div>
11081120
</div>
11091121
</div>
11101122
</section>

translations.js

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -35,6 +35,7 @@ const T = {
3535
autogate_desc: "Automated gating for flow cytometry data. Removes the manual, subjective step of population gating with a reproducible, algorithm-driven pipeline — built to integrate with research workflows and produce publication-ready results.",
3636
chibio_desc: "A new control interface for the chi.bio open bioreactor platform — finer experimental control, better data export, and a more capable operator experience than the original firmware allows.",
3737
densitree_desc: "Density-normalized clustering with minimum spanning tree construction for high-dimensional data. A state-of-the-art SPADE implementation that outperforms FlowSOM and PhenoGraph on standard benchmarks — usable for cytometry, single-cell, and any point-cloud data with imbalanced density.",
38+
kinbiont_desc: "An ecosystem of numerical methods for microbial kinetics data analysis — from preprocessing to result interpretation. Covers growth curve fitting, model selection, segmentation, and comparative analysis across experimental conditions. Developed with the Pinheiro Group at Human Technopole.",
3839
oss_released: "Released",
3940

4041
research_label: "Research output",
@@ -150,6 +151,7 @@ const T = {
150151
autogate_desc: "Gating automatico per dati di citometria a flusso. Elimina il passaggio manuale e soggettivo del gating con una pipeline riproducibile e algoritmica — integrata nei flussi di lavoro di ricerca per risultati pronti alla pubblicazione.",
151152
chibio_desc: "Una nuova interfaccia di controllo per la piattaforma di bioreattori aperti chi.bio — controllo sperimentale più preciso, migliore esportazione dei dati e un'esperienza operativa più avanzata rispetto al firmware originale.",
152153
densitree_desc: "Clustering basato sulla densità con costruzione di albero di copertura minimo per dati ad alta dimensionalità. Un'implementazione SPADE allo stato dell'arte che supera FlowSOM e PhenoGraph nei benchmark standard — utilizzabile per citometria, single-cell e qualsiasi dato con densità sbilanciata.",
154+
kinbiont_desc: "Un ecosistema di metodi numerici per l'analisi dei dati di cinetica microbica — dalla pre-elaborazione all'interpretazione dei risultati. Include adattamento di curve di crescita, selezione di modelli, segmentazione e analisi comparativa tra condizioni sperimentali. Sviluppato con il Pinheiro Group al Human Technopole.",
153155
oss_released: "Rilasciato",
154156

155157
research_label: "Output di ricerca",
@@ -265,6 +267,7 @@ const T = {
265267
autogate_desc: "Gating automático para dados de citometria de fluxo. Elimina a etapa manual e subjetiva de gating de populações com um pipeline reproduzível e algorítmico — integrado a fluxos de trabalho de pesquisa para resultados prontos para publicação.",
266268
chibio_desc: "Uma nova interface de controle para a plataforma de biorreator aberto chi.bio — controle experimental mais preciso, melhor exportação de dados e experiência operacional mais avançada do que o firmware original.",
267269
densitree_desc: "Clustering normalizado por densidade com construção de árvore geradora mínima para dados de alta dimensionalidade. Uma implementação SPADE estado-da-arte que supera FlowSOM e PhenoGraph em benchmarks padrão — utilizável para citometria, single-cell e qualquer dado com densidade desbalanceada.",
270+
kinbiont_desc: "Um ecossistema de métodos numéricos para análise de dados de cinética microbiana — do pré-processamento à interpretação de resultados. Inclui ajuste de curvas de crescimento, seleção de modelos, segmentação e análise comparativa entre condições experimentais. Desenvolvido com o Pinheiro Group no Human Technopole.",
268271
oss_released: "Lançado",
269272

270273
research_label: "Produção científica",
@@ -380,6 +383,7 @@ const T = {
380383
autogate_desc: "Automatyczne gating dla danych cytometrii przepływowej. Eliminuje ręczny, subiektywny krok bramkowania populacji za pomocą reprodukowalnego potoku algorytmicznego — zintegrowanego z przepływami pracy badawczej.",
381384
chibio_desc: "Nowy interfejs sterowania dla otwartej platformy bioreaktorów chi.bio — precyzyjniejsza kontrola eksperymentów, lepszy eksport danych i bardziej zaawansowane doświadczenie operatora niż oryginalne oprogramowanie.",
382385
densitree_desc: "Klastrowanie znormalizowane gęstością z konstrukcją minimalnego drzewa rozpinającego dla danych wielowymiarowych. Najnowocześniejsza implementacja SPADE, która przewyższa FlowSOM i PhenoGraph w standardowych benchmarkach — do cytometrii, single-cell i dowolnych danych z niezrównoważoną gęstością.",
386+
kinbiont_desc: "Ekosystem metod numerycznych do analizy danych kinetyki mikrobiologicznej — od wstępnego przetwarzania po interpretację wyników. Obejmuje dopasowanie krzywych wzrostu, wybór modeli, segmentację i analizę porównawczą między warunkami eksperymentalnymi. Opracowany z Pinheiro Group w Human Technopole.",
383387
oss_released: "Wydano",
384388

385389
research_label: "Wyniki badań",

0 commit comments

Comments
 (0)