Dont document other commands

Author: JoannaaKL

README.md

@@ -349,16 +349,6 @@ Example:
 github-mcp-server tool-search "issue" --max-results 5
 ```
 
-- `github-mcp-server list-scopes` lists required OAuth scopes for the currently enabled tools/toolsets.
-
-List required OAuth scopes for enabled tools:
-
-```bash
-github-mcp-server list-scopes
-github-mcp-server list-scopes --toolsets=repos,issues,pull_requests
-github-mcp-server list-scopes --output=json
-```
-
 ## Tool Configuration
 
 The GitHub MCP Server supports enabling or disabling specific groups of functionalities via the `--toolsets` flag. This allows you to control which GitHub API capabilities are available to your AI tools. Enabling only the toolsets that you need can help the LLM with tool choice and reduce the context size.
@@ -875,7 +865,7 @@ The following sets of tools are available:
     - 'add' - add a sub-issue to a parent issue in a GitHub repository.
     - 'remove' - remove a sub-issue from a parent issue in a GitHub repository.
     - 'reprioritize' - change the order of sub-issues within a parent issue in a GitHub repository. Use either 'after_id' or 'before_id' to specify the new position.
-    				 (string, required)
+         (string, required)
   - `owner`: Repository owner (string, required)
   - `replace_parent`: When true, replaces the sub-issue's current parent issue. Use with 'add' method only. (boolean, optional)
   - `repo`: Repository name (string, required)
@@ -1103,8 +1093,8 @@ The following sets of tools are available:
 
 - **pull_request_read** - Get details for a single pull request
   - **Required OAuth Scopes**: `repo`
-  - `method`: Action to specify what pull request data needs to be retrieved from GitHub. 
-    Possible options: 
+  - `method`: Action to specify what pull request data needs to be retrieved from GitHub.
+    Possible options:
      1. get - Get details of a specific pull request.
      2. get_diff - Get the diff of a pull request.
      3. get_status - Get status of a head commit in a pull request. This reflects status of builds and checks.