Update documentation after projects migration

Co-authored-by: omgitsads <4619+omgitsads@users.noreply.github.com>

Author: Copilot

README.md

@@ -398,20 +398,15 @@ The following sets of tools are available:
 | `code_security` | Code security related tools, such as GitHub Code Scanning |
 | `dependabot` | Dependabot tools |
 | `discussions` | GitHub Discussions related tools |
-| `experiments` | Experimental features that are not considered stable yet |
 | `gists` | GitHub Gist related tools |
 | `git` | GitHub Git API related tools for low-level Git operations |
 | `issues` | GitHub Issues related tools |
 | `labels` | GitHub Labels related tools |
 | `notifications` | GitHub Notifications related tools |
-| `orgs` | GitHub Organization related tools |
-| `projects` | GitHub Projects related tools |
 | `pull_requests` | GitHub Pull Request related tools |
 | `repos` | GitHub Repository related tools |
 | `secret_protection` | Secret protection related tools, such as GitHub Secret Scanning |
 | `security_advisories` | Security advisories related tools |
-| `stargazers` | GitHub Stargazers related tools |
-| `users` | GitHub User related tools |
 <!-- END AUTOMATED TOOLSETS -->
 
 ### Additional Toolsets in Remote GitHub MCP Server
@@ -657,15 +652,10 @@ The following sets of tools are available:
   - `owner`: Repository owner (string, required)
   - `repo`: Repository name (string, required)
 
-- **get_label** - Get a specific label from a repository.
-  - `name`: Label name. (string, required)
-  - `owner`: Repository owner (username or organization name) (string, required)
-  - `repo`: Repository name (string, required)
-
 - **issue_read** - Get issue details
   - `issue_number`: The number of the issue (number, required)
-  - `method`: The read operation to perform on a single issue. 
-Options are: 
+  - `method`: The read operation to perform on a single issue.
+Options are:
 1. get - Get details of a specific issue.
 2. get_comments - Get issue comments.
 3. get_sub_issues - Get sub-issues of the issue.
@@ -683,8 +673,8 @@ Options are:
   - `issue_number`: Issue number to update (number, optional)
   - `labels`: Labels to apply to this issue (string[], optional)
   - `method`: Write operation to perform on a single issue.
-Options are: 
-- 'create' - creates a new issue. 
+Options are:
+- 'create' - creates a new issue.
 - 'update' - updates an existing issue.
  (string, required)
   - `milestone`: Milestone number (number, optional)
@@ -764,7 +754,7 @@ Options are:
 <summary>Notifications</summary>
 
 - **dismiss_notification** - Dismiss notification
-  - `state`: The new state of the notification (read/done) (string, optional)
+  - `state`: The new state of the notification (read/done) (string, required)
   - `threadID`: The ID of the notification thread (string, required)
 
 - **get_notification_details** - Get notification details
@@ -797,89 +787,6 @@ Options are:
 
 <details>
 
-<summary>Organizations</summary>
-
-- **search_orgs** - Search organizations
-  - `order`: Sort order (string, optional)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `query`: Organization search query. Examples: 'microsoft', 'location:california', 'created:>=2025-01-01'. Search is automatically scoped to type:org. (string, required)
-  - `sort`: Sort field by category (string, optional)
-
-</details>
-
-<details>
-
-<summary>Projects</summary>
-
-- **add_project_item** - Add project item
-  - `item_id`: The numeric ID of the issue or pull request to add to the project. (number, required)
-  - `item_type`: The item's type, either issue or pull_request. (string, required)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `project_number`: The project's number. (number, required)
-
-- **delete_project_item** - Delete project item
-  - `item_id`: The internal project item ID to delete from the project (not the issue or pull request ID). (number, required)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `project_number`: The project's number. (number, required)
-
-- **get_project** - Get project
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `project_number`: The project's number (number, required)
-
-- **get_project_field** - Get project field
-  - `field_id`: The field's id. (number, required)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `project_number`: The project's number. (number, required)
-
-- **get_project_item** - Get project item
-  - `fields`: Specific list of field IDs to include in the response (e.g. ["102589", "985201", "169875"]). If not provided, only the title field is included. (string[], optional)
-  - `item_id`: The item's ID. (number, required)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `project_number`: The project's number. (number, required)
-
-- **list_project_fields** - List project fields
-  - `after`: Forward pagination cursor from previous pageInfo.nextCursor. (string, optional)
-  - `before`: Backward pagination cursor from previous pageInfo.prevCursor (rare). (string, optional)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `per_page`: Results per page (max 50) (number, optional)
-  - `project_number`: The project's number. (number, required)
-
-- **list_project_items** - List project items
-  - `after`: Forward pagination cursor from previous pageInfo.nextCursor. (string, optional)
-  - `before`: Backward pagination cursor from previous pageInfo.prevCursor (rare). (string, optional)
-  - `fields`: Field IDs to include (e.g. ["102589", "985201"]). CRITICAL: Always provide to get field values. Without this, only titles returned. (string[], optional)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `per_page`: Results per page (max 50) (number, optional)
-  - `project_number`: The project's number. (number, required)
-  - `query`: Query string for advanced filtering of project items using GitHub's project filtering syntax. (string, optional)
-
-- **list_projects** - List projects
-  - `after`: Forward pagination cursor from previous pageInfo.nextCursor. (string, optional)
-  - `before`: Backward pagination cursor from previous pageInfo.prevCursor (rare). (string, optional)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `per_page`: Results per page (max 50) (number, optional)
-  - `query`: Filter projects by title text and open/closed state; permitted qualifiers: is:open, is:closed; examples: "roadmap is:open", "is:open feature planning". (string, optional)
-
-- **update_project_item** - Update project item
-  - `item_id`: The unique identifier of the project item. This is not the issue or pull request ID. (number, required)
-  - `owner`: If owner_type == user it is the handle for the GitHub user account. If owner_type == org it is the name of the organization. The name is not case sensitive. (string, required)
-  - `owner_type`: Owner type (string, required)
-  - `project_number`: The project's number. (number, required)
-  - `updated_field`: Object consisting of the ID of the project field to update and the new value for the field. To clear the field, set value to null. Example: {"id": 123456, "value": "New Value"} (object, required)
-
-</details>
-
-<details>
-
 <summary>Pull Requests</summary>
 
 - **add_comment_to_pending_review** - Add review comment to the requester's latest pending pull request review
@@ -985,123 +892,6 @@ Possible options:
 
 <details>
 
-<summary>Repositories</summary>
-
-- **create_branch** - Create branch
-  - `branch`: Name for new branch (string, required)
-  - `from_branch`: Source branch (defaults to repo default) (string, optional)
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-
-- **create_or_update_file** - Create or update file
-  - `branch`: Branch to create/update the file in (string, required)
-  - `content`: Content of the file (string, required)
-  - `message`: Commit message (string, required)
-  - `owner`: Repository owner (username or organization) (string, required)
-  - `path`: Path where to create/update the file (string, required)
-  - `repo`: Repository name (string, required)
-  - `sha`: Required if updating an existing file. The blob SHA of the file being replaced. (string, optional)
-
-- **create_repository** - Create repository
-  - `autoInit`: Initialize with README (boolean, optional)
-  - `description`: Repository description (string, optional)
-  - `name`: Repository name (string, required)
-  - `organization`: Organization to create the repository in (omit to create in your personal account) (string, optional)
-  - `private`: Whether repo should be private (boolean, optional)
-
-- **delete_file** - Delete file
-  - `branch`: Branch to delete the file from (string, required)
-  - `message`: Commit message (string, required)
-  - `owner`: Repository owner (username or organization) (string, required)
-  - `path`: Path to the file to delete (string, required)
-  - `repo`: Repository name (string, required)
-
-- **fork_repository** - Fork repository
-  - `organization`: Organization to fork to (string, optional)
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-
-- **get_commit** - Get commit details
-  - `include_diff`: Whether to include file diffs and stats in the response. Default is true. (boolean, optional)
-  - `owner`: Repository owner (string, required)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `repo`: Repository name (string, required)
-  - `sha`: Commit SHA, branch name, or tag name (string, required)
-
-- **get_file_contents** - Get file or directory contents
-  - `owner`: Repository owner (username or organization) (string, required)
-  - `path`: Path to file/directory (directories must end with a slash '/') (string, optional)
-  - `ref`: Accepts optional git refs such as `refs/tags/{tag}`, `refs/heads/{branch}` or `refs/pull/{pr_number}/head` (string, optional)
-  - `repo`: Repository name (string, required)
-  - `sha`: Accepts optional commit SHA. If specified, it will be used instead of ref (string, optional)
-
-- **get_latest_release** - Get latest release
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-
-- **get_release_by_tag** - Get a release by tag name
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-  - `tag`: Tag name (e.g., 'v1.0.0') (string, required)
-
-- **get_tag** - Get tag details
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-  - `tag`: Tag name (string, required)
-
-- **list_branches** - List branches
-  - `owner`: Repository owner (string, required)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `repo`: Repository name (string, required)
-
-- **list_commits** - List commits
-  - `author`: Author username or email address to filter commits by (string, optional)
-  - `owner`: Repository owner (string, required)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `repo`: Repository name (string, required)
-  - `sha`: Commit SHA, branch or tag name to list commits of. If not provided, uses the default branch of the repository. If a commit SHA is provided, will list commits up to that SHA. (string, optional)
-
-- **list_releases** - List releases
-  - `owner`: Repository owner (string, required)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `repo`: Repository name (string, required)
-
-- **list_tags** - List tags
-  - `owner`: Repository owner (string, required)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `repo`: Repository name (string, required)
-
-- **push_files** - Push files to repository
-  - `branch`: Branch to push to (string, required)
-  - `files`: Array of file objects to push, each object with path (string) and content (string) (object[], required)
-  - `message`: Commit message (string, required)
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-
-- **search_code** - Search code
-  - `order`: Sort order for results (string, optional)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `query`: Search query using GitHub's powerful code search syntax. Examples: 'content:Skill language:Java org:github', 'NOT is:archived language:Python OR language:go', 'repo:github/github-mcp-server'. Supports exact matching, language filters, path filters, and more. (string, required)
-  - `sort`: Sort field ('indexed' only) (string, optional)
-
-- **search_repositories** - Search repositories
-  - `minimal_output`: Return minimal repository information (default: true). When false, returns full GitHub API repository objects. (boolean, optional)
-  - `order`: Sort order (string, optional)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `query`: Repository search query. Examples: 'machine learning in:name stars:>1000 language:python', 'topic:react', 'user:facebook'. Supports advanced search syntax for precise filtering. (string, required)
-  - `sort`: Sort repositories by field, defaults to best match (string, optional)
-
-</details>
-
-<details>
-
 <summary>Secret Protection</summary>
 
 - **get_secret_scanning_alert** - Get secret scanning alert
@@ -1151,40 +941,6 @@ Possible options:
   - `sort`: Sort field. (string, optional)
   - `state`: Filter by advisory state. (string, optional)
 
-</details>
-
-<details>
-
-<summary>Stargazers</summary>
-
-- **list_starred_repositories** - List starred repositories
-  - `direction`: The direction to sort the results by. (string, optional)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `sort`: How to sort the results. Can be either 'created' (when the repository was starred) or 'updated' (when the repository was last pushed to). (string, optional)
-  - `username`: Username to list starred repositories for. Defaults to the authenticated user. (string, optional)
-
-- **star_repository** - Star repository
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-
-- **unstar_repository** - Unstar repository
-  - `owner`: Repository owner (string, required)
-  - `repo`: Repository name (string, required)
-
-</details>
-
-<details>
-
-<summary>Users</summary>
-
-- **search_users** - Search users
-  - `order`: Sort order (string, optional)
-  - `page`: Page number for pagination (min 1) (number, optional)
-  - `perPage`: Results per page for pagination (min 1, max 100) (number, optional)
-  - `query`: User search query. Examples: 'john smith', 'location:seattle', 'followers:>100'. Search is automatically scoped to type:user. (string, required)
-  - `sort`: Sort users by number of followers or repositories, or when the person joined GitHub. (string, optional)
-
 </details>
 <!-- END AUTOMATED TOOLS -->