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Add info about environment variables
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‎_sources/quick-start.rst.txt‎

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@@ -130,6 +130,20 @@ are stored, as well as an environment variable that can be used to access the da
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:code:`$ ggd install hg19-cpg-islands-ucsc-v1`
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Each data package comes with a set of environment variables. To activate those environment variables run:
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.. code-block:: bash
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$ source activate base
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.. note::
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In order to activate and use data package environment variables you must be in the conda environment where the
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data packages was installed. If you used the :code:`--prefix` argument during install or you are in an different
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conda environment than the one where the data package was installed you will not be able to use the data package's
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environment variables. Instead, use :code:`ggd get-files`
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4) Listing installed packages
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-----------------------------
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‎_sources/recipes/genomics/Danio_rerio/GRCz10/grcz10-reference-genome-ensembl-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics grcz10-reference-genome-ensembl-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/grcz10-reference-genome-ensembl-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/grcz10-reference-genome-ensembl-v1
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:target: https://anaconda.org/ggd-genomics/grcz10-reference-genome-ensembl-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Danio_rerio/GRCz11/grcz11-reference-genome-ensembl-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics grcz11-reference-genome-ensembl-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/grcz11-reference-genome-ensembl-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/grcz11-reference-genome-ensembl-v1
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:target: https://anaconda.org/ggd-genomics/grcz11-reference-genome-ensembl-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Danio_rerio/danRer10/danrer10-gtf-ensembl-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics danrer10-gtf-ensembl-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/danrer10-gtf-ensembl-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/danrer10-gtf-ensembl-v1
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:target: https://anaconda.org/ggd-genomics/danrer10-gtf-ensembl-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Danio_rerio/danRer10/danrer10-gtf-refseq-ucsc-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics danrer10-gtf-refseq-ucsc-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/danrer10-gtf-refseq-ucsc-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/danrer10-gtf-refseq-ucsc-v1
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:target: https://anaconda.org/ggd-genomics/danrer10-gtf-refseq-ucsc-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Danio_rerio/danRer10/danrer10-reference-genome-ucsc-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics danrer10-reference-genome-ucsc-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/danrer10-reference-genome-ucsc-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/danrer10-reference-genome-ucsc-v1
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:target: https://anaconda.org/ggd-genomics/danrer10-reference-genome-ucsc-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Danio_rerio/danRer11/danrer11-reference-genome-ucsc-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics danrer11-reference-genome-ucsc-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/danrer11-reference-genome-ucsc-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/danrer11-reference-genome-ucsc-v1
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:target: https://anaconda.org/ggd-genomics/danrer11-reference-genome-ucsc-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Homo_sapiens/GRCh37/grch37-1000g-omni-snps-broad-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics grch37-1000g-omni-snps-broad-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/grch37-1000g-omni-snps-broad-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/grch37-1000g-omni-snps-broad-v1
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:target: https://anaconda.org/ggd-genomics/grch37-1000g-omni-snps-broad-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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50+
.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Homo_sapiens/GRCh37/grch37-1000g-snps-phase1-broad-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics grch37-1000g-snps-phase1-broad-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/grch37-1000g-snps-phase1-broad-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/grch37-1000g-snps-phase1-broad-v1
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:target: https://anaconda.org/ggd-genomics/grch37-1000g-snps-phase1-broad-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
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data files.

‎_sources/recipes/genomics/Homo_sapiens/GRCh37/grch37-amino-acid-sequences-chr-regions-gencode-v1/README.rst.txt‎

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@@ -39,4 +39,16 @@ With ggd installed and an activated ggd channel (see :ref:`using-ggd`), install
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ggd install -c genomics grch37-amino-acid-sequences-chr-regions-gencode-v1
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.. |downloads| image:: https://anaconda.org/ggd-genomics/grch37-amino-acid-sequences-chr-regions-gencode-v1/badges/downloads.svg
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:target: https://anaconda.org/ggd-genomics/grch37-amino-acid-sequences-chr-regions-gencode-v1
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:target: https://anaconda.org/ggd-genomics/grch37-amino-acid-sequences-chr-regions-gencode-v1
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Activating Environment Variables
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--------------------------------
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Run :code:`source activate base` after installing the data package to activate the environment variables
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associated with this data package.
49+
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.. note::
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You must be in the conda environment where the data package was installed in order to use the
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associated environment variables. Otherwise, use :code:`ggd get-files` to access this package's
54+
data files.

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