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Pull requests: nf-core/modules

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Pull requests list

Add new module: pridepy/downloadfile
#11753 opened May 22, 2026 by jonasscheid Contributor Loading…
11 of 13 tasks
bump bcl-convert size/s
#11749 opened May 22, 2026 by matthdsm Contributor Loading…
17 tasks
Update to topics hostile/*
#11748 opened May 22, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
Update DEEPVARIANT/* to 1.10.0
#11743 opened May 22, 2026 by awgymer Contributor Loading…
17 tasks
6
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
update module: fastqdl
#11741 opened May 21, 2026 by camlloyd Member • Draft
2 of 17 tasks
1
1
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
Add REGENIE chunked step 1 modules
#11739 opened May 21, 2026 by lyh970817 Contributor • Draft
17 of 20 tasks
feat(vcontact3): add vcontact3/prepareddatabases module
#11738 opened May 21, 2026 by olawal1001 • Draft
17 tasks
11
Add new module: savana/run Ready for Review
#11737 opened May 21, 2026 by manascripts Member Loading…
10 of 13 tasks
5
Update downsampling subworkflow to samtools coverage
#11736 opened May 21, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
swap variantbam to topic size/m
#11734 opened May 21, 2026 by SPPearce Contributor Loading…
new module: custom/bed12codonpositions Ready for Review
#11733 opened May 21, 2026 by pinin4fjords Member Loading…
4 tasks done
1
Update phasing and imputation sbwf
#11731 opened May 21, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
feat(simpleaf): add simpleaf/multiplexquant module
#11724 opened May 20, 2026 by an-altosian Contributor Loading…
3 tasks
3
Add new module: octopusv/stat Ready for Review
#11719 opened May 20, 2026 by manascripts Member Loading…
11 of 13 tasks
2
add anvi-gen-contigs-database module Ready for Review
#11713 opened May 20, 2026 by telatin Contributor Loading…
12 of 17 tasks
1
Add samplesheetparser/diff module
#11711 opened May 20, 2026 by chaitanyakasaraneni Contributor Loading…
11 of 14 tasks
Add Zarr support to scanpy/pca
#11697 opened May 19, 2026 by ehsanestaji Contributor Loading…
12 of 14 tasks
5
Mobsuite typer
#11664 opened May 17, 2026 by jfy133 Member Loading…
17 tasks
1
New module: GRIMER
#11663 opened May 17, 2026 by Jonahnki Loading…
5 tasks done
1
21
Add new module: flumut size/m
#11662 opened May 17, 2026 by EdoardoGiussani Loading…
9 of 11 tasks
1
2
Test: Phold
#11661 opened May 17, 2026 by anna-parker • Draft
17 tasks
3
Update parabricks mutectcaller for sarek
#11647 opened May 14, 2026 by gburnett-nvidia Contributor Loading…
Allow cellranger renaming to ignore irregular filename patterns enhancement New feature or request
#11646 opened May 14, 2026 by tgelafr-pfzr Contributor Loading…
5 of 7 tasks
1
@tgelafr-pfzr
10
ProTip! Updated in the last three days: updated:>2026-05-21.