Updated datasets 2025-04-06 UTC

Author: actions-user

aws_open_datasets.json

@@ -3806,7 +3806,7 @@
     },
     {
         "Name": "COVID-19 Genome Sequence Dataset",
-        "Description": "Genomic sequence reads of SARS-CoV-2 and related coronaviridae, organized by NCBI accession Files in the `sra-src` folder are in FASTQ, BAM, or CRAM format (original submission); files in the  `run` folder are in sra format and require the SRA Toolkit",
+        "Description": "Genetic variations of SARS-CoV-2 in VCF format, organized by NCBI accession Each VCF file corresponds to the SRA parent-run's accession ID Files in the vcf folder are in VCF and can be read by any program that accepts *vcf files or can read tabular data",
         "ARN": "arn:aws:s3:::sra-pub-sars-cov2",
         "Region": "us-east-1",
         "Type": "S3 Bucket",

aws_open_datasets.tsv

@@ -139,7 +139,7 @@ CMS 2008-2010 Data Entrepreneurs’ Synthetic Public Use File (DE-SynPUF) in OMO
 COBRA	Whole slide images with corresponding labels including skin cancer and basal cel	arn:aws:s3:::cobra-pathology	us-west-2	S3 Bucket	https://daangeijs.github.io/cobra/	https://www.computationalpathologygroup.eu/members/daan-geijs/	Radboud University Medical Center	As required	CC BY-SA-NC 4.0	aws-pds, life sciences, cancer, computational pathology, deep learning, histopathology, computer vision					
 COCO - Common Objects in Context - fast.ai datasets	Datasets	arn:aws:s3:::fast-ai-coco	us-east-1	S3 Bucket	http://course.fast.ai/datasets	info@fast.ai	[fast.ai](http://www.fast.ai/)	As required	Creative Commons http://cocodataset.org/#termsofuse	aws-pds, deep learning, computer vision, machine learning					
 COVID-19 Data Lake	Collected COVID-19 related datasets	arn:aws:s3:::covid19-lake	us-east-2	S3 Bucket	https://aws.amazon.com/blogs/big-data/a-public-data-lake-for-analysis-of-covid-1	aws-covid-19-data-lake@amazon.com	[Amazon Web Services](https://aws.amazon.com/)	Periodically	Varies by dataset	amazon.science, bioinformatics, biology, coronavirus, COVID-19, health, life sciences, MERS, medicine, SARS	['[Browse Bucket](https://covid19-lake.s3.amazonaws.com/index.html)']				
-COVID-19 Genome Sequence Dataset	Genomic sequence reads of SARS-CoV-2 and related coronaviridae, organized by NCB	arn:aws:s3:::sra-pub-sars-cov2	us-east-1	S3 Bucket	https://www.ncbi.nlm.nih.gov/sra/docs/sra-aws-download/	https://support.nlm.nih.gov/support/create-case/	[National Library of Medicine (NLM)](http://nlm.nih.gov/)	Daily	[NIH Genomic Data Sharing Policy](https://osp.od.nih.gov/scientific-sharing/geno	aws-pds, bioinformatics, biology, coronavirus, COVID-19, fastq, bam, cram, genomic, genetic, health, life sciences, MERS, SARS, virus, STRIDES, whole genome sequencing, transcriptomics					
+COVID-19 Genome Sequence Dataset	Genetic variations of SARS-CoV-2 in VCF format, organized by NCBI accession Eac	arn:aws:s3:::sra-pub-sars-cov2	us-east-1	S3 Bucket	https://www.ncbi.nlm.nih.gov/sra/docs/sra-aws-download/	https://support.nlm.nih.gov/support/create-case/	[National Library of Medicine (NLM)](http://nlm.nih.gov/)	Daily	[NIH Genomic Data Sharing Policy](https://osp.od.nih.gov/scientific-sharing/geno	aws-pds, bioinformatics, biology, coronavirus, COVID-19, fastq, bam, cram, genomic, genetic, health, life sciences, MERS, SARS, virus, STRIDES, whole genome sequencing, transcriptomics					
 COVID-19 Genome Sequence Dataset	Metadata for sra-pub-sars-cov2 in an Athena-queryable format	arn:aws:s3:::sra-pub-sars-cov2-metadata-us-east-1	us-east-1	S3 Bucket	https://www.ncbi.nlm.nih.gov/sra/docs/sra-aws-download/	https://support.nlm.nih.gov/support/create-case/	[National Library of Medicine (NLM)](http://nlm.nih.gov/)	Daily	[NIH Genomic Data Sharing Policy](https://osp.od.nih.gov/scientific-sharing/geno	aws-pds, bioinformatics, biology, coronavirus, COVID-19, fastq, bam, cram, genomic, genetic, health, life sciences, MERS, SARS, virus, STRIDES, whole genome sequencing, transcriptomics					
 COVID-19 Harmonized Data	COVID-19 Harmonized Dataset	arn:aws:s3:::covid19-harmonized-dataset	us-east-2	S3 Bucket	https://www.stitchdata.com/docs/integrations/saas/covid-19	covid19.dataset@talend.com	[Talend / Stitch](http://www.stitchdata.com/)	New COVID-19 data is added twice daily	There are no restrictions on the use of this data.	aws-pds, COVID-19, coronavirus, life sciences	['[Browse Bucket](https://covid19-harmonized-dataset.s3.amazonaws.com/index.html)']				
 COVID-19 Molecular Structure and Therapeutics Hub	Data storage of for the MolSSI and BioExcel COVID-19 Hub Includes atomistic str	arn:aws:s3:::molssi-bioexcel-covid-19-structure-therapeutics-hub	us-east-1	S3 Bucket	https://covid.molssi.org/	info@molssi.org	[Molecular Sciences Software Institute (MolSSI)](https://molssi.org/) and [BioEx	Data contributions come from external researchers and groups at a roughly weekly	Most data will be in an open license provided by the contributing individual(s).	aws-pds, biology, bioinformatics, coronavirus, COVID-19, life sciences, molecular docking, pharmaceutical