Skip to content

Commit 02aacd6

Browse files
committed
Added the RDF
1 parent 2623436 commit 02aacd6

6 files changed

Lines changed: 344 additions & 0 deletions
43.7 MB
Binary file not shown.
16.4 MB
Binary file not shown.
Lines changed: 172 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,172 @@
1+
@prefix biopax: <http://www.biopax.org/release/biopax-level3.owl#> .
2+
@prefix cito: <http://purl.org/spar/cito/> .
3+
@prefix dcat: <http://www.w3.org/ns/dcat#> .
4+
@prefix dcterms: <http://purl.org/dc/terms/> .
5+
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
6+
@prefix freq: <http://purl.org/cld/freq/> .
7+
@prefix gpml: <http://vocabularies.wikipathways.org/gpml#> .
8+
@prefix hmdb: <https://identifiers.org/hmdb/> .
9+
@prefix ncbigene: <https://identifiers.org/ncbigene/> .
10+
@prefix owl: <http://www.w3.org/2002/07/owl#> .
11+
@prefix pav: <http://purl.org/pav/> .
12+
@prefix prov: <http://www.w3.org/ns/prov#> .
13+
@prefix pubmed: <http://www.ncbi.nlm.nih.gov/pubmed/> .
14+
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
15+
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
16+
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
17+
@prefix void: <http://rdfs.org/ns/void#> .
18+
@prefix wp: <http://vocabularies.wikipathways.org/wp#> .
19+
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
20+
21+
<http://data.wikipathways.org/20260410/linkset/lipidmaps>
22+
rdf:type void:Linkset ;
23+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
24+
dcterms:title "WPRDF to LIPID MAPS Linkset" ;
25+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
26+
void:linkPredicate wp:bdbLipidMaps ;
27+
void:objectsTarget <http://identifiers.org/lipidmaps/LMFA01050243> ;
28+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
29+
30+
<http://data.wikipathways.org/20260410/linkset/rhea>
31+
rdf:type void:Linkset ;
32+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
33+
dcterms:title "WPRDF to Rhea Linkset" ;
34+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
35+
void:linkPredicate wp:bdbRhea ;
36+
void:objectsTarget <http://identifiers.org/rhea/35868> ;
37+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
38+
39+
<http://data.wikipathways.org/20260410/rdf/wp>
40+
rdf:type dcat:Distribution ;
41+
void:dataDump <http://data.wikipathways.org/20260410/rdf/wikipathways-20260410-rdf-wp.zip> ;
42+
dcat:downloadURL <http://data.wikipathways.org/20260410/rdf/wikipathways-20260410-rdf-wp.zip> ;
43+
dcat:mediaType "application/zip" .
44+
45+
<http://data.wikipathways.org/20260410/linkset/pubchem>
46+
rdf:type void:Linkset ;
47+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
48+
dcterms:title "WPRDF to PubChem Linkset" ;
49+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
50+
void:linkPredicate wp:bdbPubChem ;
51+
void:objectsTarget <http://rdf.ncbi.nlm.nih.gov/pubchem/compound/CID101770> ;
52+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
53+
54+
<http://data.wikipathways.org/20260410/linkset/wikidata>
55+
rdf:type void:Linkset ;
56+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
57+
dcterms:title "WPRDF to Wikidata Linkset" ;
58+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
59+
void:linkPredicate wp:bdbWikidata ;
60+
void:objectsTarget <http://www.wikidata.org/entity/Q2013> ;
61+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
62+
63+
<http://data.wikipathways.org/20260410/linkset/ensembl>
64+
rdf:type void:Linkset ;
65+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
66+
dcterms:title "WPRDF to Ensembl Linkset" ;
67+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
68+
void:linkPredicate wp:bdbEnsembl ;
69+
void:objectsTarget <http://identifiers.org/ensembl/ENSG00000100031> ;
70+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
71+
72+
<http://data.wikipathways.org/20260410/linkset/chebi>
73+
rdf:type void:Linkset ;
74+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
75+
dcterms:title "WPRDF to ChEBI Linkset" ;
76+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
77+
void:linkPredicate wp:bdbChEBI ;
78+
void:objectsTarget <http://identifiers.org/chebi/CHEBI:138307> ;
79+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
80+
81+
<http://data.wikipathways.org/20260410/datasetDescription/>
82+
rdf:type void:DatasetDescription ;
83+
dcterms:description "This is the VoID description for this WikiPathways RDF dataset created on 20260410."@en ;
84+
dcterms:issued "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
85+
dcterms:modified "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
86+
dcterms:title "WikiPathways RDF VoID Description"@en ;
87+
dcterms:publisher <http://www.wikidata.org/entity/Q131790020> ;
88+
pav:createdBy <https://github.com/wikipathways/GPML2RDF/> ;
89+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
90+
pav:createdWith <https://github.com/wikipathways/GPML2RDF/tree/v5> ;
91+
pav:lastUpdateOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
92+
foaf:primaryTopic <http://data.wikipathways.org/20260410/rdf/> .
93+
94+
<http://data.wikipathways.org/20260410/linkset/uniprot>
95+
rdf:type void:Linkset ;
96+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
97+
dcterms:title "WPRDF to UniProt Linkset" ;
98+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
99+
void:linkPredicate wp:bdbUniprot ;
100+
void:objectsTarget <http://identifiers.org/uniprot/17928> ;
101+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
102+
103+
<http://data.wikipathways.org/20260410/linkset/inchikey>
104+
rdf:type void:Linkset ;
105+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
106+
dcterms:title "WPRDF to InChIKey Linkset" ;
107+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
108+
void:linkPredicate wp:bdbInChIKey ;
109+
void:objectsTarget <http://identifiers.org/inchikey/ADVPTQAUNPRNPO-REOHCLBHSA-N> ;
110+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
111+
112+
<http://data.wikipathways.org/20260410/smiles>
113+
rdf:type void:Dataset ;
114+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
115+
pav:importedFrom <https://wikidata.org/> ;
116+
dcat:landingPage <https://www.wikidata.org/wiki/Wikidata:WikiProject_Chemistry> ;
117+
dcterms:title "Compound SMILES from Wikidata" .
118+
119+
<http://data.wikipathways.org/20260410/citedin>
120+
rdf:type void:Dataset ;
121+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
122+
void:linkPredicate cito:cites ;
123+
dcterms:title "Citations to WikiPathways pathways" .
124+
125+
<http://data.wikipathways.org/20260410/rdf/>
126+
rdf:type void:Dataset ;
127+
dcterms:accuralPeriodicity freq:monthly ;
128+
dcterms:description "WikiPathways RDF data dump of the pathways created on 20260410." ;
129+
dcterms:issued "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
130+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
131+
dcterms:subject wp:Catalysis , <https://identifiers.org/taxonomy/4081> , <https://identifiers.org/taxonomy/6239> , wp:Metabolite , <https://identifiers.org/taxonomy/3702> , <https://identifiers.org/taxonomy/4932> , wp:Complex , <https://identifiers.org/taxonomy/7165> , wp:Interaction , <https://identifiers.org/taxonomy/10090> , <https://identifiers.org/taxonomy/1773> , wp:Inhibition , <https://identifiers.org/taxonomy/7227> , <https://identifiers.org/taxonomy/4530> , <https://identifiers.org/taxonomy/9606> , wp:Protein , <https://identifiers.org/taxonomy/1423> , wp:Pathway , <https://identifiers.org/taxonomy/7955> , biopax:Pathway , <https://identifiers.org/taxonomy/9031> , wp:GeneProduct , <https://identifiers.org/taxonomy/10116> , wp:Binding , <https://identifiers.org/taxonomy/9615> , <https://identifiers.org/taxonomy/9598> , <https://identifiers.org/taxonomy/5518> , wp:Rna , wp:DirectedInteraction , <https://identifiers.org/taxonomy/4577> , <https://identifiers.org/taxonomy/5833> , wp:TranscriptionTranslation , <https://identifiers.org/taxonomy/562> , <https://identifiers.org/taxonomy/9913> , <https://identifiers.org/taxonomy/3694> , wp:ComplexBinding , wp:PublicationReference , wp:Stimulation , <https://identifiers.org/taxonomy/9796> ;
132+
dcterms:title "WikiPathways RDF 20260410" ;
133+
dcterms:publisher <http://www.wikidata.org/entity/Q131790020> ;
134+
pav:createdAt <http://www.wikidata.org/entity/Q1137652> ;
135+
pav:createdBy <https://github.com/wikipathways/GPML2RDF> ;
136+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
137+
pav:importedFrom <https://github.com/wikipathways/wikipathways-database> ;
138+
pav:importedOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
139+
void:exampleResource <https://identifiers.org/obo.chebi/17242> , hmdb:HMDB02005 , <https://rdf.wikipathways.org/WP15> , <https://identifiers.org/pubmed/15215856> , ncbigene:2678 ;
140+
void:subset <http://data.wikipathways.org/20260410/linkset/complexportal>, <http://data.wikipathways.org/20260410/linkset/inchikey>, <http://data.wikipathways.org/20260410/linkset/uniprot>, <http://data.wikipathways.org/20260410/linkset/lipidmaps>, <http://data.wikipathways.org/20260410/linkset/rhea>, <http://data.wikipathways.org/20260410/linkset/pubchem>, <http://data.wikipathways.org/20260410/linkset/wikidata>, <http://data.wikipathways.org/20260410/linkset/chebi>, <http://data.wikipathways.org/20260410/linkset/ensembl>, <http://data.wikipathways.org/20260410/smiles>, <http://data.wikipathways.org/20260410/citedin> ;
141+
dcat:distribution <http://data.wikipathways.org/20260410/rdf/gpml> , <http://data.wikipathways.org/20260410/rdf/wp> , <http://data.wikipathways.org/20260410/rdf/authors> ;
142+
void:uriSpace "https://identifiers.org" , "http://rdf.wikipathways.org/wp/" ;
143+
void:vocabulary wp: , biopax: , gpml: , foaf: , pav: ;
144+
dcat:landingPage <https://www.wikipathways.org/> ;
145+
dcat:theme <http://semanticscience.org/resource/SIO_001107> ;
146+
foaf:homepage <https://www.wikipathways.org/> .
147+
148+
<http://www.wikidata.org/entity/Q131790020>
149+
rdf:type foaf:Organization ;
150+
rdfs:label "Department of Translational Genomics, Maastricht University" ;
151+
foaf:homepage <https://www.maastrichtuniversity.nl/research/translational-genomics> .
152+
153+
<http://data.wikipathways.org/20260410/rdf/gpml>
154+
rdf:type dcat:Distribution ;
155+
void:dataDump <http://data.wikipathways.org/20260410/rdf/wikipathways-20260410-rdf-gpml.zip> ;
156+
dcat:downloadURL <http://data.wikipathways.org/20260410/rdf/wikipathways-20260410-rdf-gpml.zip> ;
157+
dcat:mediaType "application/zip" .
158+
159+
<http://data.wikipathways.org/20260410/rdf/authors>
160+
rdf:type dcat:Distribution ;
161+
void:dataDump <http://data.wikipathways.org/20260410/rdf/wikipathways-20260410-rdf-authors.zip> ;
162+
dcat:downloadURL <http://data.wikipathways.org/20260410/rdf/wikipathways-20260410-rdf-authors.zip> ;
163+
dcat:mediaType "application/zip" .
164+
165+
<http://data.wikipathways.org/20260410/linkset/complexportal>
166+
rdf:type void:Linkset ;
167+
dcterms:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
168+
dcterms:title "WPRDF to Complex Portal Linkset" ;
169+
pav:createdOn "2026-04-10T00:49:27.872Z"^^xsd:dateTime ;
170+
void:linkPredicate wp:bdbComplexPortal ;
171+
void:objectsTarget <http://identifiers.org/complexportal/CPX-373> ;
172+
void:subjectsTarget <http://data.wikipathways.org/20260410/rdf/> .
43.7 MB
Binary file not shown.
16.4 MB
Binary file not shown.

0 commit comments

Comments
 (0)