Update citedin in frontmatter .md files

actions-user · actions-user · commit 50554af3fd88 · 2026-04-05T08:02:43.000Z
diff --git a/_pathways/WP138.md b/_pathways/WP138.md
@@ -47,6 +47,10 @@ citedin:
 - link: PMC8534397
   title: 'Intergenic SNPs in Obstructive Sleep Apnea Syndrome: Revealing Metabolic,
     Oxidative Stress and Immune-Related Pathways (2021)'
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - ONTOX
 description: 'Androgens, mainly testosterone and 5alpha-dihydrotestosterone (DHT)
diff --git a/_pathways/WP1533.md b/_pathways/WP1533.md
@@ -57,6 +57,9 @@ citedin:
 - link: PMC12266872
   title: 'Pathophysiological mechanisms in severe preeclampsia: role of upregulated
     proteins in blood pressure, extracellular matrix and immunity (2025)'
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities:
 - ONTOX
 description: Vitamin B12 is a water soluble, organic compound and essential nutrient
diff --git a/_pathways/WP1559.md b/_pathways/WP1559.md
@@ -20,6 +20,10 @@ citedin:
 - link: PMC7733519
   title: A multivariable miRNA signature delineates the systemic hemodynamic impact
     of arteriovenous shunt placement in a pilot study (2020)
+- link: PMC10130036
+  title: Genes whose expressions in the primary lung squamous cell carcinoma are able
+    to accurately predict the progression of metastasis through lymphatic system,
+    inferred from a bioinformatics analyses (2023)
 communities: []
 description: Transcription Factors that possibly regulate the expression of microRNAs
   related to cardiac hypertrophy. Interactions found by using TransMir. MicroRNAs
diff --git a/_pathways/WP179.md b/_pathways/WP179.md
@@ -80,6 +80,10 @@ citedin:
   title: A bioinformatics approach combined with experimental validation analyzes
     the efficacy of azithromycin in treating SARS-CoV-2 infection in patients with
     IPF and COPD (2025)
+- link: PMC10130036
+  title: Genes whose expressions in the primary lung squamous cell carcinoma are able
+    to accurately predict the progression of metastasis through lymphatic system,
+    inferred from a bioinformatics analyses (2023)
 communities:
 - CPTAC
 - ONTOX
diff --git a/_pathways/WP1984.md b/_pathways/WP1984.md
@@ -44,6 +44,10 @@ citedin:
 - link: PMC8534397
   title: 'Intergenic SNPs in Obstructive Sleep Apnea Syndrome: Revealing Metabolic,
     Oxidative Stress and Immune-Related Pathways (2021)'
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities: []
 description: This pathway incorporates the most important proteins for breast cancer.
   The Rp score from the Connectivity-Maps (C-Maps) webserver was used to determine
diff --git a/_pathways/WP2032.md b/_pathways/WP2032.md
@@ -31,6 +31,10 @@ citedin:
   title: Serum extracellular vesicle microRNAs as potential biomarkers to predict
     pembrolizumab response and prognosis in metastatic non-small cell lung cancer
     patients (2025)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - ONTOX
 description: Human thyroid-stimulating hormone (TSH) is a glycoprotein hormone secreted
diff --git a/_pathways/WP2038.md b/_pathways/WP2038.md
@@ -31,6 +31,9 @@ citedin:
 - link: PMC12470172
   title: Altered Neuroinflammatory Transcriptomic Profile in the Hippocampal Dentate
     Gyrus Three Weeks After Lateral Fluid Percussion Injury in Rats (2025)
+- link: PMC11449776
+  title: Exploration of the link between COVID-19 and gastric cancer from the perspective
+    of bioinformatics and systems biology (2024)
 communities:
 - ONTOX
 description: 'Microtubules (MTs) are essential for vesicle transport, cellular polarity
diff --git a/_pathways/WP2361.md b/_pathways/WP2361.md
@@ -50,6 +50,10 @@ citedin:
 - link: PMC12106470
   title: 'Glypican-3 regulated epithelial mesenchymal transformation-related genes
     in osteosarcoma: based on comprehensive tumor microenvironment profiling (2025)'
+- link: PMC10130036
+  title: Genes whose expressions in the primary lung squamous cell carcinoma are able
+    to accurately predict the progression of metastasis through lymphatic system,
+    inferred from a bioinformatics analyses (2023)
 communities: []
 description: Network generated by mapping candidate oncogenes and tumor suppressor
   genes identified by integrated analysis of expression array and aCGH data. Networks
diff --git a/_pathways/WP2406.md b/_pathways/WP2406.md
@@ -23,6 +23,10 @@ citedin:
   title: Transcriptome analysis of newly established carboplatin-resistant ovarian
     cancer cell model reveals genes shared by drug resistance and drug-induced EMT
     (2023)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities: []
 description: Factors involved in the induction of cardiac differentiation in vitro
   and in vivo. This model was based on the below two review articles.  Proteins on
diff --git a/_pathways/WP241.md b/_pathways/WP241.md
@@ -31,6 +31,10 @@ citedin:
     Producing High Levels of CXCL10 upon Restimulation (2023)
 - link: PMC12301734
   title: Investigating Transcriptional Age Acceleration in Inflammatory Skin Diseases
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - CPTAC
 - Micronutrients
diff --git a/_pathways/WP2436.md b/_pathways/WP2436.md
@@ -43,6 +43,9 @@ citedin:
 - link: PMC12854766
   title: Hierarchical Mechanistic Modeling of Complex Toxicity Endpoints from Public
     Concentration-Response Data (2026)
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities:
 - ONTOX
 description: 'Dopamine is an organic chemical of the catecholamine and phenethylamine
diff --git a/_pathways/WP2446.md b/_pathways/WP2446.md
@@ -77,6 +77,10 @@ citedin:
 - link: PMC10104777
   title: HPV status represents dominant trait driving delineation of survival-associated
     gene co-expression networks in head and neck cancer
+- link: PMC10130036
+  title: Genes whose expressions in the primary lung squamous cell carcinoma are able
+    to accurately predict the progression of metastasis through lymphatic system,
+    inferred from a bioinformatics analyses (2023)
 communities:
 - CPTAC
 - Diseases
diff --git a/_pathways/WP2447.md b/_pathways/WP2447.md
@@ -42,6 +42,9 @@ citedin:
 - link: 10.1016/j.softx.2024.101701
   title: 'ODAMNet: A Python package to identify molecular relationships between chemicals
     and rare diseases using overlap, active module and random walk approaches (2024)'
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities:
 - RareDiseases
 description: Amyotrophic lateral sclerosis (ALS) is a progressive, lethal, degenerative
diff --git a/_pathways/WP272.md b/_pathways/WP272.md
@@ -18,6 +18,9 @@ citedin:
 - link: PMC9572022
   title: Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation
     System (2022)
+- link: PMC11449776
+  title: Exploration of the link between COVID-19 and gastric cancer from the perspective
+    of bioinformatics and systems biology (2024)
 communities: []
 description: 'Coagulation is a complex process by which blood forms clots. It is an
   important part of hemostasis (the cessation of blood loss from a damaged vessel),
diff --git a/_pathways/WP2814.md b/_pathways/WP2814.md
@@ -19,6 +19,9 @@ citedin:
 - link: 10.1038/s41588-024-02031-y
   title: Refining breast cancer genetic risk and biology through multi-ancestry fine-mapping
     analyses of 192 risk regions (2025)
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities: []
 description: The primary mammary gland persists until puberty, when it grows and becomes
   branched. This results in the formation of secondary mammary gland.  ESR1 and NRIP1
diff --git a/_pathways/WP2828.md b/_pathways/WP2828.md
@@ -48,6 +48,12 @@ citedin:
 - link: PMC12448840
   title: 'GNNenrich: a novel method for pathway enrichment analysis based on graph
     neural network (2025)'
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
+- link: PMC11449776
+  title: Exploration of the link between COVID-19 and gastric cancer from the perspective
+    of bioinformatics and systems biology (2024)
 communities:
 - CPTAC
 - Diseases
diff --git a/_pathways/WP2857.md b/_pathways/WP2857.md
@@ -37,6 +37,10 @@ citedin:
 - link: PMC11980838
   title: EIF3D safeguards the homeostasis of key signaling pathways in human primed
     pluripotency (2025)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - ExRNA
 description: Model depicting mesodermal specification based on the literature and
diff --git a/_pathways/WP2858.md b/_pathways/WP2858.md
@@ -32,6 +32,10 @@ citedin:
   title: Comparative RNA-Sequencing Analysis Reveals High Complexity and Heterogeneity
     of Transcriptomic and Immune Profiles in Hepatocellular Carcinoma Tumors of Viral
     (HBV, HCV) and Non-Viral Etiology (2022)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - ExRNA
 - ONTOX
diff --git a/_pathways/WP286.md b/_pathways/WP286.md
@@ -44,6 +44,9 @@ citedin:
   title: 'A Practical Strategy for Exploring the Pharmacological Mechanism of Luteolin
     Against COVID-19/Asthma Comorbidity: Findings of System Pharmacology and Bioinformatics
     Analysis (2024)'
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities: []
 description: 'Interleukin 3 (IL-3) is a potent growth factor belonging to the super
   family of cytokines. IL-3 is a 20- 32kDa glycoprotein involved in the process of
diff --git a/_pathways/WP2865.md b/_pathways/WP2865.md
@@ -54,6 +54,9 @@ citedin:
   title: In silico transcriptional analysis of asymptomatic and severe COVID-19 patients
     reveals the susceptibility of severe patients to other comorbidities and non-viral
     pathological conditions (2023)
+- link: PMC11449776
+  title: Exploration of the link between COVID-19 and gastric cancer from the perspective
+    of bioinformatics and systems biology (2024)
 communities:
 - Diseases
 - ExRNA
diff --git a/_pathways/WP2880.md b/_pathways/WP2880.md
@@ -39,6 +39,10 @@ citedin:
 - link: PMC12854766
   title: Hierarchical Mechanistic Modeling of Complex Toxicity Endpoints from Public
     Concentration-Response Data (2026)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities: []
 description: The glucocorticoid receptor (GR, a.k.a. NR3C1) is a nuclear receptor
   that is activated upon binding of cortisol or glucocorticoids. It mainly regulates
diff --git a/_pathways/WP2882.md b/_pathways/WP2882.md
@@ -85,6 +85,10 @@ citedin:
 - link: PMC12628759
   title: A computational reference for human genomics analysis in (poly)phenol research
     (2025)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - ONTOX
 description: In the field of molecular biology, nuclear receptors are a class of proteins
diff --git a/_pathways/WP3286.md b/_pathways/WP3286.md
@@ -31,6 +31,10 @@ citedin:
   title: Comparative RNA-Sequencing Analysis Reveals High Complexity and Heterogeneity
     of Transcriptomic and Immune Profiles in Hepatocellular Carcinoma Tumors of Viral
     (HBV, HCV) and Non-Viral Etiology (2022)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities: []
 description: Copper is a redox-active transition metal and an essential trace element
   for life. It is a catalytic cofactor for numerous enzymes involved in critical biological
diff --git a/_pathways/WP3287.md b/_pathways/WP3287.md
@@ -15,6 +15,9 @@ citedin:
 - link: PMC13001922
   title: Gene expression and metadata based identification of key genes for lung cancer,
     COPD, and IPF using machine learning and statistical models (2026)
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities:
 - AOP
 - Nanomaterials
diff --git a/_pathways/WP357.md b/_pathways/WP357.md
@@ -40,6 +40,10 @@ citedin:
 - link: 10.1159/000535120
   title: Human Monocytes Exposed to SARS-CoV-2 Display Features of Innate Immune Memory
     Producing High Levels of CXCL10 upon Restimulation (2023)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - Mitochondrion
 - ONTOX
diff --git a/_pathways/WP3624.md b/_pathways/WP3624.md
@@ -79,6 +79,20 @@ citedin:
 - link: PMC11792194
   title: Enhanced therapeutic effects of hypoxia-preconditioned mesenchymal stromal
     cell-derived extracellular vesicles in renal ischemic injury (2025)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
+- link: PMC10130036
+  title: Genes whose expressions in the primary lung squamous cell carcinoma are able
+    to accurately predict the progression of metastasis through lymphatic system,
+    inferred from a bioinformatics analyses (2023)
+- link: PMC11449776
+  title: Exploration of the link between COVID-19 and gastric cancer from the perspective
+    of bioinformatics and systems biology (2024)
+- link: PMC11358011
+  title: A common gene signature of the right ventricle in failing rat and human hearts
+    (2024)
 communities:
 - AOP
 - Diseases
diff --git a/_pathways/WP3630.md b/_pathways/WP3630.md
@@ -38,6 +38,10 @@ citedin:
     Association (2022)
 - link: PMC12301734
   title: Investigating Transcriptional Age Acceleration in Inflammatory Skin Diseases
+- link: PMC10130036
+  title: Genes whose expressions in the primary lung squamous cell carcinoma are able
+    to accurately predict the progression of metastasis through lymphatic system,
+    inferred from a bioinformatics analyses (2023)
 communities: []
 description: A model for DNA damage, inflammation, NAD+, and aging. Two key events,
   the activation of PARP by DNA damage and the decreased NAMPT expression associated
diff --git a/_pathways/WP368.md b/_pathways/WP368.md
@@ -36,6 +36,10 @@ citedin:
     Approach to Identify Molecular Markers and Therapeutic Targets'
 - link: PMC12301734
   title: Investigating Transcriptional Age Acceleration in Inflammatory Skin Diseases
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - Mitochondrion
 - ONTOX
diff --git a/_pathways/WP4022.md b/_pathways/WP4022.md
@@ -30,6 +30,10 @@ citedin:
     visualizations (2023)
 - link: PMC12301734
   title: Investigating Transcriptional Age Acceleration in Inflammatory Skin Diseases
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - MetaKids
 description: 'Pyrimidines are nucleic acids and the products of pyrimidine degradation
diff --git a/_pathways/WP4172.md b/_pathways/WP4172.md
@@ -91,6 +91,10 @@ citedin:
 - link: PMC13001926
   title: Non-invasive host transcriptome and HPV oncogene expression map the molecular
     landscape of HPV-driven cervical lesions (2026)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - CPTAC
 - ONTOX
diff --git a/_pathways/WP4240.md b/_pathways/WP4240.md
@@ -16,6 +16,10 @@ citedin:
 - link: PMC11831748
   title: Bioinformatics analysis identifies dysregulation of miR-548F-3p and its hub
     gene in triple-negative breast cancer (2025)
+- link: PMC10130036
+  title: Genes whose expressions in the primary lung squamous cell carcinoma are able
+    to accurately predict the progression of metastasis through lymphatic system,
+    inferred from a bioinformatics analyses (2023)
 communities:
 - CPTAC
 description: In prometaphase, highly condensed chromosomes establish bipolar attachments
diff --git a/_pathways/WP4290.md b/_pathways/WP4290.md
@@ -29,6 +29,10 @@ citedin:
 - link: PMC11971274
   title: Mitochondrial, metabolic and bioenergetic adaptations drive plasticity of
     colorectal cancer cells and shape their chemosensitivity (2025)
+- link: PMC10050213
+  title: Transcriptome analysis of newly established carboplatin-resistant ovarian
+    cancer cell model reveals genes shared by drug resistance and drug-induced EMT
+    (2023)
 communities:
 - CPTAC
 - Diseases
diff --git a/_pathways/WP4300.md b/_pathways/WP4300.md
@@ -36,6 +36,9 @@ citedin:
 - link: PMC11592252
   title: Differential Protein-Coding Gene Expression Profile in Patients with Prostate
     Cancer (2024)
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities:
 - ExRNA
 description: (A) FB-derived exosomes enriched with miR-21-3p or Spp1 and EGFR proteins
diff --git a/_pathways/WP4479.md b/_pathways/WP4479.md
@@ -12,6 +12,9 @@ citedin:
 - link: 10.1159/000529687
   title: Identification of the Genetic Influence of SARS-CoV-2 Infections on IgA Nephropathy
     Based on Bioinformatics Method (2023)
+- link: PMC9524193
+  title: Bioinformatics and systems biology approach to identify the pathogenetic
+    link of Long COVID and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (2022)
 communities: []
 description: THBD inhibition of HMGB1 mediated pro-inflammatory pathway via proteolytic
   cleavage of HMGB1.
diff --git a/_pathways/WP4564.md b/_pathways/WP4564.md
@@ -20,6 +20,9 @@ citedin:
 - link: PMC9646470
   title: Clinical improvement of DM1 patients reflected by reversal of disease-induced
     gene expression in blood (2022)
+- link: PMC11449776
+  title: Exploration of the link between COVID-19 and gastric cancer from the perspective
+    of bioinformatics and systems biology (2024)
 communities:
 - ONTOX
 description: During normal neuronal development, neural crest cells participate in
diff --git a/_pathways/WP4565.md b/_pathways/WP4565.md
@@ -34,6 +34,9 @@ citedin:
 - link: PMC9646470
   title: Clinical improvement of DM1 patients reflected by reversal of disease-induced
     gene expression in blood (2022)
+- link: PMC11449776
+  title: Exploration of the link between COVID-19 and gastric cancer from the perspective
+    of bioinformatics and systems biology (2024)
 communities:
 - CPTAC
 description: Neural crest cells migrate and invade as part of normal development,
diff --git a/_pathways/WP466.md b/_pathways/WP466.md
diff --git a/_pathways/WP4786.md b/_pathways/WP4786.md
diff --git a/_pathways/WP4816.md b/_pathways/WP4816.md
diff --git a/_pathways/WP4830.md b/_pathways/WP4830.md
diff --git a/_pathways/WP5053.md b/_pathways/WP5053.md
diff --git a/_pathways/WP545.md b/_pathways/WP545.md
diff --git a/_pathways/WP558.md b/_pathways/WP558.md
diff --git a/_pathways/WP560.md b/_pathways/WP560.md
diff --git a/_pathways/WP615.md b/_pathways/WP615.md
