Remove classic.wikipathways.org links

Author: marvinm2

404.md

@@ -21,7 +21,5 @@ layout: default
   <h1>404</h1>
 
   <p><strong>Page not found :(</strong></p>
-  <p>Are you looking for a page on the classic site? Try changing your URL to "classic.wikipathways.org"
-    or follow <a href="https://classic.wikipathways.org">this link</a> to the classic site's home page.
-  </p>
+  <p>The requested page was not found. Try searching or browsing from the <a href="https://www.wikipathways.org">home page</a>.</p>
 </div>

_communities/reactome.md

@@ -1,8 +1,8 @@
 ---
 display-name: "Reactome"
 title: "Reactome pathways at WikiPathways"
-description: "The Reactome portal can be found at https://classic.wikipathways.org/index.php/Portal:Reactome."
-short-description: "The Reactome pathways can be found at https://classic.wikipathways.org/index.php/Portal:Reactome."
+description: "The Reactome pathways at WikiPathways can be found at https://github.com/wikipathways/reactome-gpml."
+short-description: "The Reactome pathways can be found at https://github.com/wikipathways/reactome-gpml."
 redirect_from:
   - /index.php/Portal:Reactome 
 redirect_to:

_communities/sr24.md

@@ -22,11 +22,11 @@ description: "The [Serious Request](https://www.npo3fm.nl/kominactie) 2024 actio
   <h2>Work done</h2>
   <ul>
   <li>On Friday curation continued on the new pathways but also other focus pathways, decreasing the number of points brought up on <a href=\"https://www.wikipathways.org/sr24-curation/index2.html\">this curation page</a>.</li>
-  <li>Thursday resulted in (major) improvements to WP5504 and WP5505, and two new pathways from two new contributors (Daan and Marek): <a href=\"https://classic.wikipathways.org/index.php/Pathway:WP5506\">WP5506</a> and <a href=\"https://classic.wikipathways.org/index.php/Pathway:WP5507\">WP5507</a>.</li>
+  <li>Thursday resulted in (major) improvements to WP5504 and WP5505, and two new pathways from two new contributors (Daan and Marek): <a href=\"/pathways/WP5506.html\">WP5506</a> and <a href=\"/pathways/WP5507.html\">WP5507</a>.</li>
   <li>On Wednesday we used the full list of 1384 genes to add about 30 additional pathways to our <a href=\"https://www.wikipathways.org/sr24-curation/\">curation focus list</a>.</li>
-  <li>On Tuesday a new pathway was started from the list of 347 genes: <a href=\"https://classic.wikipathways.org/index.php/Pathway:WP5505\">WP5505</a>.</li>
+  <li>On Tuesday a new pathway was started from the list of 347 genes: <a href=\"/pathways/WP5505.html\">WP5505</a>.</li>
   <li>On Monday we compared 1384 genes with WikiPathways and Reactome: 347 and and 129 were not in the database respectively.</li>
-  <li>On Sunday a new metabolite ID mapping database was created, and a first new pathway was drawn: <a href=\"https://classic.wikipathways.org/index.php/Pathway:WP5504\">WP5504</a>.</li>
+  <li>On Sunday a new metabolite ID mapping database was created, and a first new pathway was drawn: <a href=\"/pathways/WP5504.html\">WP5504</a>.</li>
   </ul>"
 
 short-description: "This community reflects the Serious Request 2024 action to raise funding for MetaKids."

_pathways/WP2863.md

@@ -13,7 +13,7 @@ citedin: ''
 communities:
 - Plants
 description: This plant pathway represents the Krebs cycle (mitochondrion). Pyruvate
-  is imported from the glycolysis ([WP2862](https://classic.wikipathways.org/instance/WP2862))
+  is imported from the glycolysis ([WP2862](/pathways/WP2862.html))
   and converted to acetyl-CoA, which enters the Krebs cycle by getting linked with
   oxaloacetic acid to form citric acid. The cycle produces ATP and NADH, releases
   CO2 and finally regenerated oxaloacetic acid.
@@ -34,7 +34,7 @@ schema-jsonld:
     '@type': Organization
     name: WikiPathways
   description: This plant pathway represents the Krebs cycle (mitochondrion). Pyruvate
-    is imported from the glycolysis ([WP2862](https://classic.wikipathways.org/instance/WP2862))
+    is imported from the glycolysis ([WP2862](/pathways/WP2862.html))
     and converted to acetyl-CoA, which enters the Krebs cycle by getting linked with
     oxaloacetic acid to form citric acid. The cycle produces ATP and NADH, releases
     CO2 and finally regenerated oxaloacetic acid.

help.md

@@ -236,16 +236,8 @@ This code will produce the following iframe:</p>
 
 <hr>
 <a id="move_from_classic"/>
-<h1>Move from classic WikiPathways</h1>
-<p>We are still in the process of moving from the classic WikiPathways site, and during this time some aspects of the site will work differently:</p>
-<ul>
-    <li>Uploading pathway content and making edits to pathways will <b>require a WikiPathways account</b>, since content is still being deposited to the classic site (<a href="https://classic.wikipathways.org/" target="_blank">https://classic.wikipathways.org/</a>). Once the move is complete, a GitHub account will be sufficient to upload/edit pathways at WikiPathways.</li>
-    <li>This website <b>contains only approved pathways</b> that have undergone review. Consequently, newly uploaded pathways will be immediately available on the classic site (<a href="https://classic.wikipathways.org/" target="_blank">https://classic.wikipathways.org/</a>), but will not be visible on this site until they are completed and approved. Once a pathway is uploaded to WikiPathways classic, the process of including them on the new site is as follows:</li>
-        <ul>
-            <li><b>Pathways under construction</b>: If your pathway is still under construction, keep the "Under Construction" tag. You can keep working on the pathway and it will stay on the classic site.</li>
-            <li><b>Completed pathways</b>: If your pathway is complete, remove the "Under Construction" tag. The pathway will be reviewed by our Reviewers. Once it is approved, it will be made available on the new site. This process typically takes 5-7 days right now.</li>
-        </ul>
-</ul>
+<h1>Classic WikiPathways</h1>
+<p>The Classic WikiPathways site is now <b>read-only</b> and the old web service has been turned off. <b>From 1 May 2026, the Classic site will be fully retired</b> and the transition to the new GitHub-based system will be complete. If you need help transitioning, please <a href="https://github.com/wikipathways/wikipathways-help/discussions" target="_blank">contact us</a>.</p>
 
 <hr>
 <div id="faq">