idecarlos_honeybee_import

Code for de Carlos et al. (2025) TODO_add_pre-print_link study:

@article{deCarlos2025,
  title = {Modelling the impacts of imports of non-native honey bees into the native \textit{{A}pis mellifera mellifera} population in {I}reland},
  author = {de Carlos, Irene and Strachan, Laura and McCormack, Grace and Gorjanc, Gregor and Obsteter, Jana},
  journal = {BioRxiv},
  year = {2025},
  doi = {https://doi.org/TODO}
}

The key files are:

• Finalsimulation.R code for scenario 1 and 2: Percentage of imports and Genetic correlation between traits in the two environments
• Spatialsimulation.R code for scenario 3: Point of entry
• Stopimports.R code for stopping importation after 20 years of simulation: Halt of imports
• Eddie file containing the code for running the scenarios on Eddie and analysing the results
• FounderGenomes_ThreePop_16chr.RData file containing the founder genomes of A. m. mellifera and A. m. carinca