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Threshold minimum precision is not configurable
featureNew feature or requestNew feature or requestStatus: Open.#88 In LadnerLab/PepSeqPred;--use-pos-weightin Optuna appears misleadingbugSomething isn't workingSomething isn't workingStatus: Open.#87 In LadnerLab/PepSeqPred;Optuna best checkpoint copy path mismatch
bugSomething isn't workingSomething isn't workingStatus: Open.#86 In LadnerLab/PepSeqPred;- Status: Open.#85 In LadnerLab/PepSeqPred;
Model has no local sequence modeling beyond ESM embeddings
featureNew feature or requestNew feature or requestStatus: Open.#84 In LadnerLab/PepSeqPred;- Status: Open.#83 In LadnerLab/PepSeqPred;
- Status: Open.#82 In LadnerLab/PepSeqPred;
- Status: Open.#81 In LadnerLab/PepSeqPred;
Training uses overlapping windows while evaluation uses full proteins
bugSomething isn't workingSomething isn't workingStatus: Open.#80 In LadnerLab/PepSeqPred;DDP and batch loss weighting are likely biased by local valid-residue counts
bugSomething isn't workingSomething isn't workingStatus: Open.#79 In LadnerLab/PepSeqPred;Sparse or zero-valid windows still participate in training
bugSomething isn't workingSomething isn't workingStatus: Open.#78 In LadnerLab/PepSeqPred;- Status: Open.#77 In LadnerLab/PepSeqPred;