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github: akodamullil
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label: Alpha Tom Kodamullil
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orcid: 0000-0001-9896-3531
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description: An ontology of phenotypic qualities (properties, attributes or characteristics)
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description: An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects.
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domain: health
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homepage: https://github.com/SCAI-BIO/BiomarkerOntology
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in_foundry_order:
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title:
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- id:
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title: Using ontologies to describe mouse phenotypes
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repository: https://github.com/pato-ontology/pato
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tracker: https://github.com/pato-ontology/pato/issues
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repository: https://github.com/SCAI-BIO/BiomarkerOntology
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tracker: https://github.com/SCAI-BIO/BiomarkerOntology/issue
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usages:
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- description: PATO is used by the Human Phenotype Ontology (HPO) for logical definitions of phenotypes that facilitate cross-species integration.
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examples:
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- description: An abnormality in a cellular process.
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url: https://www.ebi.ac.uk/ols/ontologies/hp/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FHP_0011017&viewMode=All&siblings=false
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publications:
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- id: https://www.ncbi.nlm.nih.gov/pubmed/30476213
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title: Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
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type: annotation
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user: https://hpo.jax.org/app/
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- description: BMONT is proposed to be used for improving biomarker identification tasks, as well as a supportive integratable tool for abundant AI techniques, such as Machine Learning (ML) and Large Learning Model (LLM).
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activity_status: active
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