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_posts/2025-10-22-9th-issue-newsletter.md

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DRAGON-AI (Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence), featured in [issue 4](https://obofoundry.org/newsletter/2024/03/18/4th-issue-newsletter.html), now published in Journal of Biomedical Semantics ([DOI: 10.1186/s13326-024-00320-3](https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-024-00320-3)). The paper describes a framework that applies retrieval-augmented generation methods to support the automated creation and refinement of ontologies, integrating AI techniques with ontology engineering workflows.
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SPIRES (Structured Prompt Interrogation and Recursive Extraction of Semantics), featured in[ issue 4](https://obofoundry.org/newsletter/2024/03/18/4th-issue-newsletter.html), accepted for publication in Bioinformatics ([https://doi.org/10.1093/bioinformatics/btae104](https://doi.org/10.1093/bioinformatics/btae104)). The paper presents a method that uses zero-shot learning and structured prompting to extract and organize semantic information for automatically populating knowledge bases.
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SPIRES (Structured Prompt Interrogation and Recursive Extraction of Semantics), featured in [issue 4](https://obofoundry.org/newsletter/2024/03/18/4th-issue-newsletter.html), accepted for publication in Bioinformatics ([https://doi.org/10.1093/bioinformatics/btae104](https://doi.org/10.1093/bioinformatics/btae104)). The paper presents a method that uses zero-shot learning and structured prompting to extract and organize semantic information for automatically populating knowledge bases.
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O3 Guidelines (Open Data, Open Code, and Open Infrastructure) featured in [issue 3](https://obofoundry.org/newsletter/2023/12/18/3rd-issue-newsletter.html), now published in Scientific Data ([DOI: 10.1038/s41597-024-03406-w](https://doi.org/10.1038/s41597-024-03406-w)). The paper outlines best practices for ensuring sustainable, transparent, and reusable scientific resources through open data, open code, and open infrastructure.
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