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Merged
deepakunni3 merged 1 commit into from
Oct 14, 2025
Merged

Update OBO foundry metadata #2777

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31 changes: 24 additions & 7 deletions _config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -5231,6 +5231,23 @@ ontologies:
repository: https://github.com/OOSTT/OOSTT
title: Ontology of Organizational Structures of Trauma centers and Trauma systems
tracker: https://github.com/OOSTT/OOSTT/issues
usages:
- description: OOSTT terms, such as OOSTT_00000017 'trauma program' and OOSTT_00000021
'trauma medical director role,' are used in the CAFE questionnaire to assess
trauma centers and systems.
type: application
user: https://cafe-trauma.com/
- description: OOSTT terms, such as OOSTT_00000002 'trauma center' and OOSTT_00000066
'emergency medicine liaison role,' are used in the TIPTOE questionnaire to relate
trauma center/system structure to patient outcomes.
type: application
user: https://tiptoe.apps.dbmi.cloud/tiptoe
- description: Terms from OOSTT are imported and used by OMRSE.
examples:
- description: academic degree
url: http://purl.obolibrary.org/obo/OOSTT_00000074
type: owl:Ontology
user: https://github.com/mcwdsi/OMRSE
- activity_status: active
contact:
email: zhengj2007@gmail.com
Expand Down Expand Up @@ -6454,7 +6471,7 @@ ontologies:
build:
infallible: 1
method: obo2owl
source_url: https://raw.githubusercontent.com/DiseaseOntology/SymptomOntology/master/symp.obo
source_url: https://raw.githubusercontent.com/DiseaseOntology/SymptomOntology/master/src/ontology/symp.obo
contact:
email: lynn.schriml@gmail.com
github: lschriml
Expand All @@ -6464,7 +6481,7 @@ ontologies:
changes in function, sensations or appearance reported by a patient indicative
of a disease.
domain: health
homepage: http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page
homepage: https://github.com/DiseaseOntology/SymptomOntology
id: symp
layout: ontology_detail
license:
Expand Down Expand Up @@ -6496,8 +6513,8 @@ ontologies:
- description: Symptoms of human diseases in the DO
examples:
- description: symptoms of human diseases
url: http://www.disease-ontology.org/?id=DOID:0060164
user: http://www.disease-ontology.org
url: https://disease-ontology.org/?id=DOID:0060164
user: https://disease-ontology.org/
- activity_status: active
contact:
email: allyson.lister@oerc.ox.ac.uk
Expand Down Expand Up @@ -6679,11 +6696,11 @@ ontologies:
title: Pathogen Transmission Ontology
tracker: https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues
usages:
- description: Methods of trnasmission of human diseases in the DO
- description: Methods of transmission of human diseases in the DO
examples:
- description: methods of transmission of human diseases
url: http://www.disease-ontology.org/?id=DOID:12365
user: http://www.disease-ontology.org
url: https://disease-ontology.org/?id=DOID:12365
user: https://disease-ontology.org/
- activity_status: active
contact:
email: balhoff@renci.org
Expand Down
39 changes: 31 additions & 8 deletions registry/ontologies.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -7264,7 +7264,30 @@
],
"repository": "https://github.com/OOSTT/OOSTT",
"title": "Ontology of Organizational Structures of Trauma centers and Trauma systems",
"tracker": "https://github.com/OOSTT/OOSTT/issues"
"tracker": "https://github.com/OOSTT/OOSTT/issues",
"usages": [
{
"description": "OOSTT terms, such as OOSTT_00000017 'trauma program' and OOSTT_00000021 'trauma medical director role,' are used in the CAFE questionnaire to assess trauma centers and systems.",
"type": "application",
"user": "https://cafe-trauma.com/"
},
{
"description": "OOSTT terms, such as OOSTT_00000002 'trauma center' and OOSTT_00000066 'emergency medicine liaison role,' are used in the TIPTOE questionnaire to relate trauma center/system structure to patient outcomes.",
"type": "application",
"user": "https://tiptoe.apps.dbmi.cloud/tiptoe"
},
{
"description": "Terms from OOSTT are imported and used by OMRSE.",
"examples": [
{
"description": "academic degree",
"url": "http://purl.obolibrary.org/obo/OOSTT_00000074"
}
],
"type": "owl:Ontology",
"user": "https://github.com/mcwdsi/OMRSE"
}
]
},
{
"activity_status": "active",
Expand Down Expand Up @@ -9007,7 +9030,7 @@
"build": {
"infallible": 1,
"method": "obo2owl",
"source_url": "https://raw.githubusercontent.com/DiseaseOntology/SymptomOntology/master/symp.obo"
"source_url": "https://raw.githubusercontent.com/DiseaseOntology/SymptomOntology/master/src/ontology/symp.obo"
},
"contact": {
"email": "lynn.schriml@gmail.com",
Expand All @@ -9017,7 +9040,7 @@
},
"description": "An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient indicative of a disease.",
"domain": "health",
"homepage": "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page",
"homepage": "https://github.com/DiseaseOntology/SymptomOntology",
"id": "symp",
"layout": "ontology_detail",
"license": {
Expand Down Expand Up @@ -9063,10 +9086,10 @@
"examples": [
{
"description": "symptoms of human diseases",
"url": "http://www.disease-ontology.org/?id=DOID:0060164"
"url": "https://disease-ontology.org/?id=DOID:0060164"
}
],
"user": "http://www.disease-ontology.org"
"user": "https://disease-ontology.org/"
}
]
},
Expand Down Expand Up @@ -9316,14 +9339,14 @@
"tracker": "https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues",
"usages": [
{
"description": "Methods of trnasmission of human diseases in the DO",
"description": "Methods of transmission of human diseases in the DO",
"examples": [
{
"description": "methods of transmission of human diseases",
"url": "http://www.disease-ontology.org/?id=DOID:12365"
"url": "https://disease-ontology.org/?id=DOID:12365"
}
],
"user": "http://www.disease-ontology.org"
"user": "https://disease-ontology.org/"
}
]
},
Expand Down
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