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deepakunni3 merged 1 commit into from
Nov 3, 2025
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Update OBO foundry metadata #2795

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111 changes: 70 additions & 41 deletions _config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -2585,6 +2585,41 @@ ontologies:
repository: https://github.com/adeans/gallont
title: Plant Gall Ontology
tracker: https://github.com/adeans/gallont/issues
- activity_status: active
build:
method: archive
path: archive
source_url: http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip
contact:
email: lschriml@som.umaryland.edu
github: lschriml
label: Lynn Schriml
orcid: 0000-0001-8910-9851
description: A gazetteer constructed on ontological principles. The countries are
actively maintained.
domain: environment
homepage: http://environmentontology.github.io/gaz/
id: gaz
layout: ontology_detail
license:
label: CC0 1.0
logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
url: https://creativecommons.org/publicdomain/zero/1.0/
mailing_list: https://groups.google.com/forum/#!forum/obo-gazetteer
ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
preferredPrefix: GAZ
products:
- id: gaz.owl
ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
- id: gaz.obo
ontology_purl: http://purl.obolibrary.org/obo/gaz.obo
- description: A country specific subset of the GAZ.
id: gaz/gaz-countries.owl
ontology_purl: http://purl.obolibrary.org/obo/gaz/gaz-countries.owl
title: GAZ countries
repository: https://github.com/EnvironmentOntology/gaz
title: Gazetteer
tracker: https://github.com/EnvironmentOntology/gaz/issues
- activity_status: active
contact:
email: rbca.jackson@gmail.com
Expand Down Expand Up @@ -5178,8 +5213,11 @@ ontologies:
- label: BioPortal
title: BioPortal Browser
url: https://bioportal.bioontology.org/ontologies/ONTONEO
- label: OntoBee
title: OntoBee Browser
url: https://ontobee.org/ontology/ONTONEO
build:
source_url: http://purl.obolibrary.org/obo/ontoneo/ontoneo.owl
source_url: https://raw.githubusercontent.com/ontoneo-project/Ontoneo/master/ontoneo.owl
contact:
email: fernanda.farinelli@gmail.com
github: FernandaFarinelli
Expand All @@ -5189,24 +5227,49 @@ ontologies:
to provide a representation of the data from electronic health records (EHRs)
involved in the care of the pregnant woman, and of her baby.
domain: health
homepage: ontoneo.com
homepage: https://ontoneo.com/
id: ontoneo
layout: ontology_detail
license:
label: CC BY 3.0
label: CC BY 4.0
logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
url: http://creativecommons.org/licenses/by/3.0/
url: https://creativecommons.org/licenses/by/4.0/
mailing_list: http://groups.google.com/group/ontoneo-discuss
ontology_purl: http://purl.obolibrary.org/obo/ontoneo.owl
preferredPrefix: ONTONEO
products:
- id: ontoneo.owl
- description: The full version of ONTONEO in OWL format
id: ontoneo.owl
ontology_purl: http://purl.obolibrary.org/obo/ontoneo.owl
title: ONTONEO
publications:
- id: https://doi.org/10.5281/zenodo.17429771
title: 'OntONeo: The Obstetric and Neonatal Ontology'
- id: https://doi.org/10.5281/zenodo.17508651
title: Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal
Domain
repository: https://github.com/ontoneo-project/Ontoneo
tags:
- biomedical
title: Obstetric and Neonatal Ontology
tracker: https://github.com/ontoneo-project/Ontoneo/issues
usages:
- description: The ReCOL research group uses OntONeo to model and structure biomedical
information, particularly in obstetrics and neonatology.
examples:
- description: The ontology has been applied in studies on data interoperability
and semantic integration, improving access to structured medical information
and enabling knowledge sharing between systems.
url: https://mba.eci.ufmg.br/wp-content/uploads/Anais_CBIS_2018_FarinelliAlmeidaLouize.pdf
user: http://recol.eci.ufmg.br/
- description: OntONeo serves as a knowledge representation framework to support
clinical decision-making and data interoperability in healthcare. It is used
in information retrieval applications, enabling structured queries over medical
databases and facilitating access to critical obstetric and neonatal health
information.
examples:
- description: Demonstrates OntONeo’s application for enabling structured data
access and semantic reasoning in clinical contexts.
url: https://doi.org/10.56238/devopinterscie-267
user: http://hdl.handle.net/1843/38044
- activity_status: active
contact:
email: mbrochhausen@gmail.com
Expand Down Expand Up @@ -8590,40 +8653,6 @@ ontologies:
label: Homo sapiens
title: Foundational Model of Anatomy Ontology (subset)
tracker: https://bitbucket.org/uwsig/fma/issues
- activity_status: inactive
build:
method: archive
path: archive
source_url: http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip
contact:
email: lschriml@som.umaryland.edu
github: lschriml
label: Lynn Schriml
orcid: 0000-0001-8910-9851
description: A gazetteer constructed on ontological principles. The countries are
actively maintained.
domain: environment
homepage: http://environmentontology.github.io/gaz/
id: gaz
layout: ontology_detail
license:
label: CC0 1.0
logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
url: https://creativecommons.org/publicdomain/zero/1.0/
mailing_list: https://groups.google.com/forum/#!forum/obo-gazetteer
ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
products:
- id: gaz.owl
ontology_purl: http://purl.obolibrary.org/obo/gaz.owl
- id: gaz.obo
ontology_purl: http://purl.obolibrary.org/obo/gaz.obo
- description: A country specific subset of the GAZ.
id: gaz/gaz-countries.owl
ontology_purl: http://purl.obolibrary.org/obo/gaz/gaz-countries.owl
title: GAZ countries
repository: https://github.com/EnvironmentOntology/gaz
title: Gazetteer
tracker: https://github.com/EnvironmentOntology/gaz/issues
- activity_status: inactive
contact:
email: topalis@imbb.forth.gr
Expand Down
2 changes: 1 addition & 1 deletion registry/obo_prefixes.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,7 @@
,[ sh:prefix "FOVT" ; sh:namespace "http://purl.obolibrary.org/obo/FOVT_"]
,[ sh:prefix "FYPO" ; sh:namespace "http://purl.obolibrary.org/obo/FYPO_"]
,[ sh:prefix "GALLONT" ; sh:namespace "http://purl.obolibrary.org/obo/GALLONT_"]
,[ sh:prefix "GAZ" ; sh:namespace "http://purl.obolibrary.org/obo/GAZ_"]
,[ sh:prefix "GECKO" ; sh:namespace "http://purl.obolibrary.org/obo/GECKO_"]
,[ sh:prefix "GENEPIO" ; sh:namespace "http://purl.obolibrary.org/obo/GENEPIO_"]
,[ sh:prefix "GENO" ; sh:namespace "http://purl.obolibrary.org/obo/GENO_"]
Expand Down Expand Up @@ -203,7 +204,6 @@
,[ sh:prefix "CEPH" ; sh:namespace "http://purl.obolibrary.org/obo/CEPH_"]
,[ sh:prefix "EHDAA2" ; sh:namespace "http://purl.obolibrary.org/obo/EHDAA2_"]
,[ sh:prefix "FMA" ; sh:namespace "http://purl.obolibrary.org/obo/FMA_"]
,[ sh:prefix "GAZ" ; sh:namespace "http://purl.obolibrary.org/obo/GAZ_"]
,[ sh:prefix "IDOMAL" ; sh:namespace "http://purl.obolibrary.org/obo/IDOMAL_"]
,[ sh:prefix "MIRO" ; sh:namespace "http://purl.obolibrary.org/obo/MIRO_"]
,[ sh:prefix "RNAO" ; sh:namespace "http://purl.obolibrary.org/obo/RNAO_"]
Expand Down
145 changes: 91 additions & 54 deletions registry/ontologies.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -3642,6 +3642,52 @@
"title": "Plant Gall Ontology",
"tracker": "https://github.com/adeans/gallont/issues"
},
{
"activity_status": "active",
"build": {
"method": "archive",
"path": "archive",
"source_url": "http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip"
},
"contact": {
"email": "lschriml@som.umaryland.edu",
"github": "lschriml",
"label": "Lynn Schriml",
"orcid": "0000-0001-8910-9851"
},
"description": "A gazetteer constructed on ontological principles. The countries are actively maintained.",
"domain": "environment",
"homepage": "http://environmentontology.github.io/gaz/",
"id": "gaz",
"layout": "ontology_detail",
"license": {
"label": "CC0 1.0",
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
"url": "https://creativecommons.org/publicdomain/zero/1.0/"
},
"mailing_list": "https://groups.google.com/forum/#!forum/obo-gazetteer",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl",
"preferredPrefix": "GAZ",
"products": [
{
"id": "gaz.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl"
},
{
"id": "gaz.obo",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz.obo"
},
{
"description": "A country specific subset of the GAZ.",
"id": "gaz/gaz-countries.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl",
"title": "GAZ countries"
}
],
"repository": "https://github.com/EnvironmentOntology/gaz",
"title": "Gazetteer",
"tracker": "https://github.com/EnvironmentOntology/gaz/issues"
},
{
"activity_status": "active",
"contact": {
Expand Down Expand Up @@ -7199,10 +7245,15 @@
"label": "BioPortal",
"title": "BioPortal Browser",
"url": "https://bioportal.bioontology.org/ontologies/ONTONEO"
},
{
"label": "OntoBee",
"title": "OntoBee Browser",
"url": "https://ontobee.org/ontology/ONTONEO"
}
],
"build": {
"source_url": "http://purl.obolibrary.org/obo/ontoneo/ontoneo.owl"
"source_url": "https://raw.githubusercontent.com/ontoneo-project/Ontoneo/master/ontoneo.owl"
},
"contact": {
"email": "fernanda.farinelli@gmail.com",
Expand All @@ -7212,29 +7263,60 @@
},
"description": "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.",
"domain": "health",
"homepage": "ontoneo.com",
"homepage": "https://ontoneo.com/",
"id": "ontoneo",
"layout": "ontology_detail",
"license": {
"label": "CC BY 3.0",
"label": "CC BY 4.0",
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
"url": "http://creativecommons.org/licenses/by/3.0/"
"url": "https://creativecommons.org/licenses/by/4.0/"
},
"mailing_list": "http://groups.google.com/group/ontoneo-discuss",
"ontology_purl": "http://purl.obolibrary.org/obo/ontoneo.owl",
"preferredPrefix": "ONTONEO",
"products": [
{
"description": "The full version of ONTONEO in OWL format",
"id": "ontoneo.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/ontoneo.owl"
"ontology_purl": "http://purl.obolibrary.org/obo/ontoneo.owl",
"title": "ONTONEO"
}
],
"repository": "https://github.com/ontoneo-project/Ontoneo",
"tags": [
"biomedical"
"publications": [
{
"id": "https://doi.org/10.5281/zenodo.17429771",
"title": "OntONeo: The Obstetric and Neonatal Ontology"
},
{
"id": "https://doi.org/10.5281/zenodo.17508651",
"title": "Formal Ontologies in Knowledge Organization within the Obstetric and Neonatal Domain"
}
],
"repository": "https://github.com/ontoneo-project/Ontoneo",
"title": "Obstetric and Neonatal Ontology",
"tracker": "https://github.com/ontoneo-project/Ontoneo/issues"
"tracker": "https://github.com/ontoneo-project/Ontoneo/issues",
"usages": [
{
"description": "The ReCOL research group uses OntONeo to model and structure biomedical information, particularly in obstetrics and neonatology.",
"examples": [
{
"description": "The ontology has been applied in studies on data interoperability and semantic integration, improving access to structured medical information and enabling knowledge sharing between systems.",
"url": "https://mba.eci.ufmg.br/wp-content/uploads/Anais_CBIS_2018_FarinelliAlmeidaLouize.pdf"
}
],
"user": "http://recol.eci.ufmg.br/"
},
{
"description": "OntONeo serves as a knowledge representation framework to support clinical decision-making and data interoperability in healthcare. It is used in information retrieval applications, enabling structured queries over medical databases and facilitating access to critical obstetric and neonatal health information.",
"examples": [
{
"description": "Demonstrates OntONeo’s application for enabling structured data access and semantic reasoning in clinical contexts.",
"url": "https://doi.org/10.56238/devopinterscie-267"
}
],
"user": "http://hdl.handle.net/1843/38044"
}
]
},
{
"activity_status": "active",
Expand Down Expand Up @@ -12022,51 +12104,6 @@
"title": "Foundational Model of Anatomy Ontology (subset)",
"tracker": "https://bitbucket.org/uwsig/fma/issues"
},
{
"activity_status": "inactive",
"build": {
"method": "archive",
"path": "archive",
"source_url": "http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/*zip*/archive.zip"
},
"contact": {
"email": "lschriml@som.umaryland.edu",
"github": "lschriml",
"label": "Lynn Schriml",
"orcid": "0000-0001-8910-9851"
},
"description": "A gazetteer constructed on ontological principles. The countries are actively maintained.",
"domain": "environment",
"homepage": "http://environmentontology.github.io/gaz/",
"id": "gaz",
"layout": "ontology_detail",
"license": {
"label": "CC0 1.0",
"logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png",
"url": "https://creativecommons.org/publicdomain/zero/1.0/"
},
"mailing_list": "https://groups.google.com/forum/#!forum/obo-gazetteer",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl",
"products": [
{
"id": "gaz.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz.owl"
},
{
"id": "gaz.obo",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz.obo"
},
{
"description": "A country specific subset of the GAZ.",
"id": "gaz/gaz-countries.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/gaz/gaz-countries.owl",
"title": "GAZ countries"
}
],
"repository": "https://github.com/EnvironmentOntology/gaz",
"title": "Gazetteer",
"tracker": "https://github.com/EnvironmentOntology/gaz/issues"
},
{
"activity_status": "inactive",
"contact": {
Expand Down
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