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Merged
matentzn merged 1 commit into from
Mar 30, 2026
+32 −11
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Update metadata for FBbi (reactivate and change ownership). #2874

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43 changes: 32 additions & 11 deletions ontology/fbbi.md
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Expand Up @@ -3,25 +3,46 @@ layout: ontology_detail
id: fbbi
title: Biological Imaging Methods Ontology
build:
method: obo2owl
source_url: https://raw.githubusercontent.com/dosumis/fbbi/master/src/ontology/fbbi.obo
checkout: git clone https://github.com/foundingGIDE/fbbi.git
path: .
system: git
contact:
email: wawong@gmail.com
github: wawong
label: Willy Wong
orcid: 0000-0002-8841-5870
description: A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.
email: damien@gerbi-gmb.de
github: gouttegd
label: Damien Goutte-Gattat
orcid: 0000-0002-6095-8718
dependencies:
- id: iao
- id: omo
- id: ro
description: An ontology for the description of sample preparation, visualization, and imaging methods used in biomedical research.
domain: investigations
homepage: http://cellimagelibrary.org/
homepage: https://github.com/foundingGIDE/fbbi
license:
label: CC BY 4.0
url: https://creativecommons.org/licenses/by/4.0/
preferredPrefix: FBbi
products:
- id: fbbi.owl
repository: https://github.com/CRBS/Biological_Imaging_Methods_Ontology
- id: fbbi.obo
- id: fbbi/fbbi-base.owl
- id: fbbi/fbbi-base.obo
repository: https://github.com/foundingGIDE/fbbi
tags:
- imaging experiments
tracker: https://github.com/CRBS/Biological_Imaging_Methods_Ontology/issues
activity_status: inactive
tracker: https://github.com/foundingGIDE/fbbi/issues
usages:
- description: FlyBase uses FBbi to annotate its image collection.
examples:
- description: images annotated to "scanning electron micrograph"
url: https://flybase.org/cgi-bin/fbcvquery.pl?mode=subtreehits&cvterm=FBbi:00000257%3EFBim
user: https://flybase.org
- description: Virtual Fly Brain uses FBbi to annotate images.
user: https://virtualflybrain.org
- description: The Cell Image Library uses FBbi to annotate images.
examples:
- description: An image annotate with several terms from FBbi.
url: https://www.cellimagelibrary.org/images/13654
user: https://www.cellimagelibrary.org
activity_status: active
---
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