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7 changes: 1 addition & 6 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,7 @@ integration-test: test valid-purl-report.txt

# Remove and/or revert all targets to their repository versions:
clean:
rm -Rf registry/ontologies.nt registry/ontologies.ttl registry/ontologies.yml sparql-consistency-report.txt jenkins-output.txt valid-purl-report.txt valid-purl-report.txt.tmp _site/ tmp/ reports/
rm -Rf registry/ontologies.nt registry/ontologies.ttl registry/ontologies.yml sparql-consistency-report.txt valid-purl-report.txt valid-purl-report.txt.tmp _site/ tmp/ reports/
git checkout _config.yml registry/ontologies.jsonld registry/ontologies.ttl registry/ontologies.yml


Expand Down Expand Up @@ -236,10 +236,5 @@ valid-purl-report.txt: registry/ontologies.yml
sparql-consistency-report.txt: registry/ontologies.yml
./util/processor.py -i $< sparql-compare > $@.tmp && mv $@.tmp $@

# output of central OBO build
# See FAQ for more details, and also README.md
jenkins-output.txt:
wget http://build.berkeleybop.org/job/simple-build-obo-all/lastBuild/consoleFull -O $@

reports/%.csv: registry/ontologies.ttl sparql/%.sparql
arq --data $< --query sparql/$*.sparql --results csv > $@.tmp && mv $@.tmp $@
30 changes: 0 additions & 30 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -116,36 +116,6 @@ do is make further edits to fix the syntax error.

TODO: add a quick guide to yaml, and the tags we use.

## Central OBO library build

(see also the FAQ entry on this)

The central OBO build runs here:

* http://build.berkeleybop.org/job/simple-build-obo-all/

It takes as metadata input the yml file from this repository. It makes
use of the `build` object.

The output of this job is a set of obo and owl files deposited in

* http://berkeleybop.org/ontologies/

Depending on the build configuration, this may also make additional files. See for example:

* http://berkeleybop.org/ontologies/uberon/

A http://berkeleybop.org/ontologies/ URL should never be handed out directly. This service exists so that:

* Un PURL-registered ontologies will have a fall-through
* Registered PURL ontologies that do not want to take charge of either OBO or OWL generation will have a place to 302-redirect to

This job will fail if ontologies marked as `infallible` fail. To debug, the full log of the last build can be examined:

* https://build.berkeleybop.org/job/simple-build-obo-all/lastBuild/consoleFull

(Look for the text "should not fail")

## Instructions for Website Development

See [README-sitedev.md](README-sitedev.md)
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