Search results

Question: Combinatorial multiplexing on single reads

Status: Open.

#887 In marcelm/cutadapt;

· Auerilas opened on Jun 30, 2026

Questions about parameters -a and -O

Status: Open.

#884 In marcelm/cutadapt;

· duzc-Repos opened on May 9, 2026

Some polyGs at the end of the sequences are not removed

Status: Open.

#883 In marcelm/cutadapt;

· saharbagheri opened on May 6, 2026

Feature request: empirical sequencing-error-rate estimation

Status: Open.

#881 In marcelm/cutadapt;

· jdidion opened on May 4, 2026

Adapter trimming and demultiplexing

Status: Open.

#880 In marcelm/cutadapt;

· owen-hughes42 opened on Apr 30, 2026

Can add qual string in header to --rename?

Status: Open.

#878 In marcelm/cutadapt;

· falsetry1514 opened on Apr 1, 2026

How to handle reads with mixed primer sequences

Status: Open.

#875 In marcelm/cutadapt;

· tao-bioinfo opened on Mar 18, 2026

read splitting concatameric read Nanopore

Status: Open.

#872 In marcelm/cutadapt;

· smartise opened on Feb 17, 2026

Cannot trim my primers in my reverse reads no matter what orientation I use.

Status: Open.

#869 In marcelm/cutadapt;

· kdbchau opened on Jan 6, 2026

Inconsistent Primer Removal in Different Amplicon Datasets Using Same cutadapt Command

Status: Open.

#867 In marcelm/cutadapt;

· rubadevis opened on Dec 2, 2025

binned quality scores in Illumina reads (paired ends)

Status: Open.

#865 In marcelm/cutadapt;

· l-gallucci opened on Nov 21, 2025

error with --rest-file or -r flags: AttributeError: 'LinkedMatch' object has no attribute 'rest'

Status: Open.

#856 In marcelm/cutadapt;

· clmattson opened on Aug 14, 2025