Issues

• Add stub sections to all local modules

  enhancement
  nf-core/ampliseq#1140 · Filter by author d4straub opened on Nov 5, 2026

• UNITE 10 SINTAX formatter misidentifies species epithet as SH identifier

  nf-core/ampliseq#1139 · Filter by author nekrut opened on Oct 30, 2026

• Add the Diat.barcode database back once it is available on Zenodo

  nf-core/ampliseq#1131 · Filter by author erikrikarddaniel opened on Oct 20, 2026

• Revisit DADA2 addSpecies n and SILVA 144 chunk size once dada2#2221 is released

  enhancement
  nf-core/ampliseq#1120 · Filter by author erikrikarddaniel opened on Oct 13, 2026
  

• Optional NEEAT noise filter for CO1 data (HAPP)

  nf-core/ampliseq#1106 · Filter by author erikrikarddaniel opened on Oct 1, 2026

• Consolidate taxonomies across classification tools/methods

  enhancement
  nf-core/ampliseq#1061 · Filter by author erikrikarddaniel opened on Aug 20, 2026 · 3.1.0
  1

• New consolidation methods: driver-table and barrnap

  enhancement
  nf-core/ampliseq#1060 · Filter by author erikrikarddaniel opened on Aug 20, 2026 · 3.1.0
  1

• raxtax looks interesting

  enhancement
  nf-core/ampliseq#937 · Filter by author erikrikarddaniel opened on Dec 15, 2025
  2

• ARM end to end run

  nf-core/ampliseq#850 · Filter by author edmundmiller opened on Mar 24, 2025
  1

• General Testing Framework

  nf-core/ampliseq#844 · Filter by author Sofokli5 opened on Mar 24, 2025
  

• Ensure Databases Combatibility with ampliseq Modules

  nf-core/ampliseq#843 · Filter by author Sofokli5 opened on Mar 24, 2025
  

• Create Test Datasets

  nf-core/ampliseq#842 · Filter by author Sofokli5 opened on Mar 24, 2025
  

• Add plant reference databases to enable nf-core/ampliseq support for plant samples

  enhancement
  nf-core/ampliseq#841 · Filter by author Sofokli5 opened on Mar 24, 2025 · 2.13.0
  5

  

• SRS alternative tool to rarefaction

  enhancement
  nf-core/ampliseq#819 · Filter by author marwa38 opened on Dec 17, 2024
  2

• Add MACSE to enable frame-shift detection for COI

  enhancement
  nf-core/ampliseq#758 · Filter by author hjarnek opened on Jul 2, 2024
  6

• Add vsearch uchime_denovo for chimera removal (or flagging)

  enhancement
  nf-core/ampliseq#631 · Filter by author andand opened on Aug 30, 2023
  4