An assembly pipeline built around the way Naegleria keeps its DNA. Sorts reads into compartments by depth before assembling, and checks the reads really support each element it reports
python rust bioinformatics snakemake nanopore genomics kmer genome-assembly rrna long-reads amoeba plasmids busco long-read-sequencing mitochondrial-genome bacterial-assembly assembly-qc naegleria extrachromosomal-dna protist
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Updated
Nov 3, 2026 - Python