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2 changes: 1 addition & 1 deletion _posts/2016-11-26-S3-switch.md
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Expand Up @@ -20,7 +20,7 @@ These purls should always be used to reference the
ontology. Maintainers of ontologies have the option of deciding what
their PURL resolves to. Many choose to resolve to the [central OBO
build
URLs](http://obofoundry.org/faq/what-is-the-build-field).
URLs](https://web.archive.org/web/20230326002924/http://obofoundry.org/faq/what-is-the-build-field).

Historically these have always resolved to
http://berkeleybop.org/ontologies/ -- we have recently changed this to
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1 change: 0 additions & 1 deletion faq/index.md
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Expand Up @@ -28,7 +28,6 @@ title: OBO Foundry Frequently Asked Questions

- [How do I edit the metadata for my ontology?](/faq/how-do-i-edit-metadata.html)
- [What are permissible values in the metadata file, e.g. for 'publications'?](/faq/permissible-metadata-content.html)
- [What is the `build` object in the ontology metadata?](/faq/what-is-the-build-field.html)
- [What does it mean for an ontology to be flagged as 'inactive', 'unresponsive', 'orphaned' or 'obsolete'?](/docs/OntologyStatus.html)

### OBO Foundry Dashboard
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134 changes: 0 additions & 134 deletions faq/what-is-the-build-field.md

This file was deleted.

4 changes: 1 addition & 3 deletions faq/where-is-the-obo-file.md
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Expand Up @@ -46,6 +46,4 @@ Developers can OPTIONALLY produce ontologies in other formats. These are convent

It does not matter to us if you maintain the source for your ontology
in obo or owl or some hybrid. You have the option of either publishing
the alternate format yourself (using a tool like ROBOT) _or_ you can
have the OBO central build pipeline do this for you. For more
information, see the FAQ entry [What is the Build field?](what-is-the-build-field.md).
the alternate format yourself (using a tool like ROBOT).
5 changes: 0 additions & 5 deletions ontology/aeo.md
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Expand Up @@ -2,11 +2,6 @@
layout: ontology_detail
id: aeo
title: Anatomical Entity Ontology
build:
checkout: git clone https://github.com/obophenotype/human-developmental-anatomy-ontology.git
method: vcs
path: src/ontology
system: git
contact:
email: J.Bard@ed.ac.uk
label: Jonathan Bard
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3 changes: 0 additions & 3 deletions ontology/aero.md
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layout: ontology_detail
id: aero
title: Adverse Event Reporting Ontology
build:
method: owl2obo
source_url: http://purl.obolibrary.org/obo/aero.owl
contact:
email: mcourtot@gmail.com
label: Melanie Courtot
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4 changes: 0 additions & 4 deletions ontology/aism.md
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Expand Up @@ -2,10 +2,6 @@
layout: ontology_detail
id: aism
title: Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
build:
checkout: git clone https://github.com/insect-morphology/aism
path: .
system: git
contact:
email: entiminae@gmail.com
github: JCGiron
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4 changes: 0 additions & 4 deletions ontology/amphx.md
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layout: ontology_detail
id: amphx
title: The Amphioxus Development and Anatomy Ontology
build:
checkout: git clone https://github.com/EBISPOT/amphx_ontology.git
path: .
system: git
contact:
email: hescriva@obs-banyuls.fr
github: hescriva
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3 changes: 0 additions & 3 deletions ontology/apo.md
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Expand Up @@ -2,9 +2,6 @@
layout: ontology_detail
id: apo
title: Ascomycete phenotype ontology
build:
method: obo2owl
source_url: https://raw.githubusercontent.com/obophenotype/ascomycete-phenotype-ontology/master/apo.obo
contact:
email: stacia@stanford.edu
github: srengel
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4 changes: 0 additions & 4 deletions ontology/bila.md
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layout: ontology_detail
id: bila
title: Bilateria anatomy
build:
insert_ontology_id: true
method: obo2owl
source_url: http://4dx.embl.de/4DXpress_4d/edocs/bilateria_mrca.obo
contact:
email: henrich@embl.de
github: ThorstenHen
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6 changes: 0 additions & 6 deletions ontology/bspo.md
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Expand Up @@ -2,12 +2,6 @@
layout: ontology_detail
id: bspo
title: Biological Spatial Ontology
build:
checkout: git clone https://github.com/obophenotype/biological-spatial-ontology.git
infallible: 1
method: vcs
path: src/ontology
system: git
contact:
email: cjmungall@lbl.gov
github: cmungall
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4 changes: 0 additions & 4 deletions ontology/bto.md
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Expand Up @@ -2,10 +2,6 @@
layout: ontology_detail
id: bto
title: BRENDA tissue / enzyme source
build:
checkout: git clone https://github.com/BRENDA-Enzymes/BTO.git
path: .
system: git
contact:
email: c.dudek@tu-braunschweig.de
github: chdudek
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4 changes: 0 additions & 4 deletions ontology/caro.md
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layout: ontology_detail
id: caro
title: Common Anatomy Reference Ontology
build:
method: obo2owl
notes: moving to owl soon
source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/caro/caro.obo
contact:
email: haendel@ohsu.edu
github: mellybelly
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3 changes: 0 additions & 3 deletions ontology/cdao.md
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layout: ontology_detail
id: cdao
title: Comparative Data Analysis Ontology
build:
method: owl2obo
source_url: http://purl.obolibrary.org/obo/cdao.owl
contact:
email: balhoff@renci.org
github: balhoff
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4 changes: 0 additions & 4 deletions ontology/cdno.md
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layout: ontology_detail
id: cdno
title: Compositional Dietary Nutrition Ontology
build:
checkout: git clone https://github.com/CompositionalDietaryNutritionOntology/cdno.git
path: .
system: git
contact:
email: landreshdz@gmail.com
github: LilyAndres
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4 changes: 0 additions & 4 deletions ontology/chebi.md
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Expand Up @@ -6,10 +6,6 @@ browsers:
- title: EBI CHEBI Browser
label: CHEBI
url: http://www.ebi.ac.uk/chebi/chebiOntology.do?treeView=true&chebiId=CHEBI:24431#graphView
build:
infallible: 1
method: obo2owl
source_url: ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo
contact:
email: amalik@ebi.ac.uk
github: amalik01
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3 changes: 0 additions & 3 deletions ontology/cheminf.md
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layout: ontology_detail
id: cheminf
title: Chemical Information Ontology
build:
method: owl2obo
source_url: https://raw.githubusercontent.com/semanticchemistry/semanticchemistry/master/ontology/cheminf.owl
contact:
email: egon.willighagen@gmail.com
github: egonw
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4 changes: 0 additions & 4 deletions ontology/clao.md
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layout: ontology_detail
id: clao
title: Collembola Anatomy Ontology
build:
checkout: git clone https://github.com/luis-gonzalez-m/Collembola.git
path: .
system: git
contact:
email: lagonzalezmo@unal.edu.co
github: luis-gonzalez-m
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4 changes: 0 additions & 4 deletions ontology/clyh.md
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layout: ontology_detail
id: clyh
title: Clytia hemisphaerica Development and Anatomy Ontology
build:
checkout: git clone https://github.com/EBISPOT/clyh_ontology.git
path: .
system: git
contact:
email: lucas.leclere@obs-banyuls.fr
github: Leclere-L
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3 changes: 0 additions & 3 deletions ontology/cmo.md
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Expand Up @@ -6,9 +6,6 @@ browsers:
- title: RGD Ontology Browser
label: RGD
url: http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=CMO:0000000
build:
method: obo2owl
source_url: https://download.rgd.mcw.edu/ontology/clinical_measurement/clinical_measurement.obo
contact:
email: jrsmith@mcw.edu
github: jrsjrs
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4 changes: 0 additions & 4 deletions ontology/cro.md
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layout: ontology_detail
id: cro
title: Contributor Role Ontology
build:
checkout: git clone https://github.com/data2health/contributor-role-ontology.git
path: src/ontology
system: git
contact:
email: whimar@ohsu.edu
github: marijane
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6 changes: 0 additions & 6 deletions ontology/cvdo.md
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Expand Up @@ -2,12 +2,6 @@
layout: ontology_detail
id: cvdo
title: Cardiovascular Disease Ontology
build:
method: owl2obo
publications:
- id: http://dx.doi.org/10.3233/978-1-61499-438-1-409
title: The Cardiovascular Disease Ontology
source_url: http://purl.obolibrary.org/obo/cvdo.owl
contact:
email: paul.fabry@usherbrooke.ca
github: pfabry
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4 changes: 0 additions & 4 deletions ontology/ddanat.md
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layout: ontology_detail
id: ddanat
title: Dictyostelium discoideum anatomy
build:
insert_ontology_id: true
method: obo2owl
source_url: https://raw.githubusercontent.com/dictyBase/migration-data/master/ontologies/dicty_anatomy.obo
contact:
email: pfey@northwestern.edu
github: pfey03
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4 changes: 0 additions & 4 deletions ontology/ddpheno.md
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layout: ontology_detail
id: ddpheno
title: Dictyostelium discoideum phenotype ontology
build:
checkout: git clone https://github.com/obophenotype/dicty-phenotype-ontology.git
path: .
system: git
contact:
email: pfey@northwestern.edu
github: pfey03
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2 changes: 0 additions & 2 deletions ontology/disdriv.md
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Expand Up @@ -6,8 +6,6 @@ browsers:
- title: DO Browser
label: DO
url: https://disease-ontology.org/
build:
source_url: https://raw.githubusercontent.com/DiseaseOntology/DiseaseDriversOntology/refs/heads/main/src/ontology/disdriv.owl
contact:
email: lynn.schriml@gmail.com
github: lschriml
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4 changes: 0 additions & 4 deletions ontology/doid.md
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Expand Up @@ -6,10 +6,6 @@ browsers:
- title: DO Browser
label: DO
url: https://disease-ontology.org/do
build:
infallible: 1
method: obo2owl
source_url: https://raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/master/src/ontology/doid.obo
contact:
email: lynn.schriml@gmail.com
github: lschriml
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